Wall clock time and date at job start Tue Mar 31 2020 20:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99951 * 2 1 4 4 H 1.48497 * 109.46717 * 274.98336 * 3 2 1 5 5 H 1.48503 * 109.46844 * 34.98374 * 3 2 1 6 6 H 1.48497 * 109.46937 * 154.98368 * 3 2 1 7 7 C 1.38811 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00160 * 173.13622 * 7 2 1 9 9 N 1.36944 * 119.99912 * 353.13376 * 7 2 1 10 10 C 1.47144 * 125.57899 * 6.05999 * 9 7 2 11 11 C 1.54633 * 107.37521 * 179.06366 * 10 9 7 12 12 C 1.53509 * 102.70483 * 339.38437 * 11 10 9 13 13 C 1.51782 * 117.00163 * 164.16466 * 12 11 10 14 14 N 1.47395 * 87.51665 * 92.93155 * 13 12 11 15 15 C 1.34776 * 135.85043 * 205.66711 * 14 13 12 16 16 O 1.21565 * 120.00135 * 5.51292 * 15 14 13 17 17 C 1.47795 * 120.00038 * 185.50968 * 15 14 13 18 18 C 1.39627 * 120.11755 * 6.69178 * 17 15 14 19 19 C 1.37889 * 119.91529 * 179.97438 * 18 17 15 20 20 C 1.38488 * 120.15807 * 0.02562 * 19 18 17 21 21 Cl 1.73601 * 119.87433 * 179.97438 * 20 19 18 22 22 C 1.38696 * 120.24144 * 359.96996 * 20 19 18 23 23 F 1.35103 * 119.95528 * 180.02562 * 22 20 19 24 24 C 1.38124 * 120.08368 * 0.02562 * 22 20 19 25 25 C 1.47385 * 88.29348 * 25.91790 * 14 13 12 26 26 C 1.47755 * 125.58029 * 186.03023 * 9 7 2 27 27 H 0.96997 * 119.99856 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.86588 * 59.61517 * 10 9 7 29 29 H 1.08998 * 109.86322 * 298.51132 * 10 9 7 30 30 H 1.08993 * 110.76391 * 221.07926 * 11 10 9 31 31 H 1.08999 * 110.75954 * 97.68684 * 11 10 9 32 32 H 1.08994 * 113.54474 * 338.26477 * 13 12 11 33 33 H 1.08998 * 113.60314 * 207.59742 * 13 12 11 34 34 H 1.07998 * 120.04315 * 359.97438 * 18 17 15 35 35 H 1.07994 * 119.92299 * 180.27653 * 19 18 17 36 36 H 1.08006 * 120.08212 * 180.02562 * 24 22 20 37 37 H 1.09006 * 113.54400 * 88.74616 * 25 14 13 38 38 H 1.09007 * 113.54548 * 219.42096 * 25 14 13 39 39 H 1.09001 * 110.40527 * 83.52559 * 26 9 7 40 40 H 1.09001 * 110.40449 * 321.10882 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0845 -1.2055 -0.1112 9 7 1.3330 -2.3838 0.1429 10 6 -0.1305 -2.5330 0.1773 11 6 -0.4375 -4.0410 0.3280 12 6 0.8619 -4.7000 -0.1555 13 6 1.0641 -6.1631 0.1944 14 7 0.4576 -6.4921 -1.1081 15 6 -0.2101 -7.5418 -1.6264 16 8 -0.5146 -8.4796 -0.9153 17 6 -0.5723 -7.5528 -3.0592 18 6 -0.1052 -6.5471 -3.9077 19 6 -0.4452 -6.5618 -5.2439 20 6 -1.2493 -7.5712 -5.7462 21 17 -1.6734 -7.5821 -7.4296 22 6 -1.7169 -8.5735 -4.9093 23 9 -2.5006 -9.5558 -5.4055 24 6 -1.3824 -8.5687 -3.5692 25 6 0.9048 -5.1763 -1.5990 26 6 1.9521 -3.7177 0.2864 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5630 -2.1578 -0.7502 29 1 -0.5387 -1.9852 1.0266 30 1 -1.2762 -4.3298 -0.3055 31 1 -0.6342 -4.2930 1.3700 32 1 0.4705 -6.4930 1.0469 33 1 2.1121 -6.4524 0.2721 34 1 0.5216 -5.7588 -3.5179 35 1 -0.0803 -5.7864 -5.9012 36 1 -1.7461 -9.3494 -2.9175 37 1 1.9085 -5.1882 -2.0240 38 1 0.1781 -4.6822 -2.2440 39 1 2.2284 -3.8986 1.3251 40 1 2.8253 -3.8029 -0.3604 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073011019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:28 Heat of formation + Delta-G solvation = 3.451030 kcal Electronic energy + Delta-G solvation = -26406.071543 eV Core-core repulsion = 22356.153081 eV Total energy + Delta-G solvation = -4049.918462 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.15991 -42.16578 -40.48467 -39.13121 -37.65479 -37.33188 -34.12447 -32.53670 -32.12308 -31.01439 -30.08700 -27.55471 -27.29459 -25.79162 -24.40733 -24.02131 -22.10340 -21.10504 -19.92930 -18.96235 -18.68349 -18.14659 -17.74339 -17.08694 -17.04168 -16.89228 -16.69034 -16.63231 -15.91646 -15.58667 -15.18017 -15.04183 -14.62513 -14.33383 -14.21741 -14.10169 -13.74458 -13.70574 -13.44673 -13.29747 -12.97354 -12.81275 -12.74431 -12.64666 -12.24091 -12.09198 -12.00219 -11.92078 -11.79134 -11.64192 -11.19628 -10.99626 -10.61085 -10.28803 -10.00997 -9.74553 -8.80219 -7.79263 -5.12069 -0.69452 -0.14313 0.77432 1.47483 1.51516 1.53293 1.60419 1.61749 2.41397 2.55339 2.79689 3.12699 3.30724 3.42583 3.45799 3.59620 3.73475 3.87133 3.88187 4.06190 4.15898 4.24753 4.35878 4.51350 4.52458 4.66706 4.68384 4.71926 4.75776 4.81607 4.89147 4.93256 4.99668 5.07789 5.20556 5.25149 5.38148 5.55929 5.72484 5.84288 6.26416 6.55637 6.91523 7.17388 7.85518 8.49668 9.31588 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.002749 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.431337 B =10183.373475 C =11526.285154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.969 3.031 4 H -0.288 1.288 5 H -0.302 1.302 6 H -0.268 1.268 7 C -0.232 4.232 8 H 0.088 0.912 9 N -0.624 5.624 10 C 0.189 3.811 11 C -0.104 4.104 12 C -0.100 4.100 13 C 0.127 3.873 14 N -0.633 5.633 15 C 0.584 3.416 16 O -0.576 6.576 17 C -0.104 4.104 18 C -0.083 4.083 19 C -0.079 4.079 20 C -0.055 4.055 21 Cl -0.039 7.039 22 C 0.093 3.907 23 F -0.129 7.129 24 C -0.090 4.090 25 C 0.114 3.886 26 C 0.152 3.848 27 H 0.244 0.756 28 H 0.011 0.989 29 H 0.004 0.996 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.169 0.831 35 H 0.179 0.821 36 H 0.153 0.847 37 H 0.123 0.877 38 H 0.091 0.909 39 H 0.033 0.967 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.000 -15.683 -10.839 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.799 3.201 4 H -0.215 1.215 5 H -0.229 1.229 6 H -0.193 1.193 7 C -0.361 4.361 8 H 0.106 0.894 9 N -0.351 5.351 10 C 0.064 3.936 11 C -0.142 4.142 12 C -0.102 4.102 13 C 0.005 3.995 14 N -0.366 5.366 15 C 0.375 3.625 16 O -0.457 6.457 17 C -0.108 4.108 18 C -0.101 4.101 19 C -0.097 4.097 20 C -0.083 4.083 21 Cl -0.010 7.010 22 C 0.073 3.927 23 F -0.107 7.107 24 C -0.110 4.110 25 C -0.008 4.008 26 C 0.027 3.973 27 H 0.053 0.947 28 H 0.030 0.970 29 H 0.022 0.978 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.135 0.865 34 H 0.186 0.814 35 H 0.196 0.804 36 H 0.170 0.830 37 H 0.141 0.859 38 H 0.109 0.891 39 H 0.051 0.949 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.632 -16.186 -10.723 19.426 hybrid contribution -0.308 0.933 -0.038 0.983 sum 0.324 -15.253 -10.761 18.670 Atomic orbital electron populations 1.70180 1.06285 1.24997 1.58500 1.25571 0.96405 1.00777 1.03072 0.85190 0.77920 0.79866 0.77143 1.21514 1.22877 1.19258 1.19443 0.91729 0.83611 1.41356 0.89431 1.44808 1.02067 1.02352 1.85859 1.20919 0.84138 0.90958 0.97614 1.22262 0.95803 0.95166 1.00956 1.22002 0.97452 0.93804 0.96902 1.22886 0.99898 0.90558 0.86134 1.49612 1.53567 1.16522 1.16903 1.17768 0.77598 0.80271 0.86853 1.90771 1.56560 1.36308 1.62067 1.19726 1.00769 0.97136 0.93130 1.22090 0.98119 0.97337 0.92570 1.21291 0.95399 0.97194 0.95817 1.21422 1.02066 0.97757 0.87033 1.98411 1.92013 1.98185 1.12393 1.17235 0.95760 0.88053 0.91658 1.91548 1.71778 1.59706 1.87714 1.21158 0.97316 0.99506 0.93042 1.23264 1.02031 0.78851 0.96629 1.21311 0.94199 0.83246 0.98566 0.94689 0.97042 0.97763 0.91198 0.91084 0.90344 0.86541 0.81358 0.80362 0.82951 0.85901 0.89093 0.94896 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.63 10.35 21.65 0.22 -54.41 16 2 C -0.07 -3.50 5.48 84.86 0.47 -3.03 16 3 Si 0.97 43.40 29.56 68.60 2.03 45.43 16 4 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.23 -11.84 10.26 84.03 0.86 -10.98 16 8 H 0.09 4.20 7.84 -2.91 -0.02 4.17 16 9 N -0.62 -28.31 3.41 -693.45 -2.36 -30.67 16 10 C 0.19 8.51 5.40 86.81 0.47 8.98 16 11 C -0.10 -3.38 6.40 31.32 0.20 -3.18 16 12 C -0.10 -2.64 1.06 -52.62 -0.06 -2.70 16 13 C 0.13 2.80 8.03 83.67 0.67 3.47 16 14 N -0.63 -14.72 3.68 -863.41 -3.17 -17.90 16 15 C 0.58 15.53 8.00 86.77 0.69 16.23 16 16 O -0.58 -19.32 17.14 -3.92 -0.07 -19.39 16 17 C -0.10 -2.28 5.87 -20.09 -0.12 -2.40 16 18 C -0.08 -1.40 9.15 22.52 0.21 -1.19 16 19 C -0.08 -1.17 9.81 22.25 0.22 -0.96 16 20 C -0.05 -0.99 6.33 22.44 0.14 -0.85 16 21 Cl -0.04 -0.67 28.60 -2.72 -0.08 -0.75 16 22 C 0.09 1.92 7.26 22.35 0.16 2.09 16 23 F -0.13 -2.84 16.83 44.97 0.76 -2.08 16 24 C -0.09 -1.97 9.57 22.57 0.22 -1.75 16 25 C 0.11 2.39 5.43 83.76 0.45 2.84 16 26 C 0.15 4.93 6.70 86.23 0.58 5.51 16 27 H 0.24 13.82 8.31 -92.71 -0.77 13.05 16 28 H 0.01 0.58 7.55 -2.39 -0.02 0.56 16 29 H 0.00 0.22 7.36 -2.39 -0.02 0.20 16 30 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.08 1.82 8.13 -2.39 -0.02 1.80 16 33 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.17 2.39 4.17 -2.91 -0.01 2.38 16 35 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 36 H 0.15 3.40 7.66 -2.91 -0.02 3.38 16 37 H 0.12 1.95 8.04 -2.38 -0.02 1.93 16 38 H 0.09 1.92 6.83 -2.38 -0.02 1.91 16 39 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 1.82 8.00 -2.39 -0.02 1.80 16 Total: -1.00 -66.80 350.09 3.57 -63.23 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: 1.08 Total: 4.46 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 5.17 Total: 12.08 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -5.31 Total: -102.98 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.07 Total: -19.39 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.76 Total: -2.08 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -0.08 Total: -0.75 kcal Total: -66.80 3.57 -63.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073011019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.680 kcal (2) G-P(sol) polarization free energy of solvation -66.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds