Wall clock time and date at job start Tue Mar 31 2020 20:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00024 * 2 1 4 4 H 1.48503 * 109.46939 * 5.81298 * 3 2 1 5 5 H 1.48501 * 109.47142 * 125.81694 * 3 2 1 6 6 H 1.48503 * 109.46922 * 245.81427 * 3 2 1 7 7 C 1.38810 * 119.99906 * 179.72476 * 2 1 3 8 8 H 1.08002 * 119.99761 * 335.42174 * 7 2 1 9 9 N 1.36936 * 119.99816 * 155.42200 * 7 2 1 10 10 C 1.47133 * 125.58979 * 355.09952 * 9 7 2 11 11 C 1.54604 * 107.36640 * 180.92980 * 10 9 7 12 12 C 1.53655 * 102.73149 * 20.75316 * 11 10 9 13 13 C 1.52371 * 116.39923 * 197.08233 * 12 11 10 14 14 N 1.47896 * 85.58893 * 218.65063 * 13 12 11 15 15 C 1.34772 * 134.34019 * 203.48379 * 14 13 12 16 16 O 1.21558 * 119.99899 * 184.78141 * 15 14 13 17 17 C 1.47771 * 120.00215 * 4.78706 * 15 14 13 18 18 C 1.39638 * 120.14429 * 334.86048 * 17 15 14 19 19 C 1.37885 * 119.91957 * 179.97438 * 18 17 15 20 20 C 1.38404 * 120.20789 * 0.02562 * 19 18 17 21 21 C 1.38453 * 120.29022 * 0.02562 * 20 19 18 22 22 F 1.35100 * 119.96196 * 179.97438 * 21 20 19 23 23 C 1.38388 * 120.08344 * 359.73996 * 21 20 19 24 24 Cl 1.73599 * 120.10780 * 180.25302 * 23 21 20 25 25 C 1.47893 * 91.31508 * 23.48456 * 14 13 12 26 26 C 1.47732 * 125.58308 * 174.79525 * 9 7 2 27 27 H 0.96998 * 120.00023 * 174.99640 * 1 2 3 28 28 H 1.08995 * 109.86804 * 300.37715 * 10 9 7 29 29 H 1.09005 * 109.86379 * 61.34786 * 10 9 7 30 30 H 1.08995 * 110.75883 * 139.06615 * 11 10 9 31 31 H 1.09004 * 110.75773 * 262.44412 * 11 10 9 32 32 H 1.08997 * 113.85246 * 332.81151 * 13 12 11 33 33 H 1.08991 * 113.85816 * 104.48511 * 13 12 11 34 34 H 1.08008 * 120.04089 * 359.96043 * 18 17 15 35 35 H 1.08003 * 119.89850 * 180.02562 * 19 18 17 36 36 H 1.07998 * 119.85131 * 180.02562 * 20 19 18 37 37 H 1.08998 * 113.85325 * 222.35115 * 25 14 13 38 38 H 1.09001 * 113.96583 * 90.69355 * 25 14 13 39 39 H 1.08997 * 110.39736 * 276.33150 * 26 9 7 40 40 H 1.08998 * 110.40083 * 38.74972 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2914 2.7429 0.1418 5 1 3.2072 1.6368 1.1353 6 1 2.9944 1.7596 -1.2772 7 6 2.0102 -1.2021 0.0058 8 1 1.5435 -2.0932 0.3991 9 7 3.2865 -1.2582 -0.4872 10 6 4.0010 -0.1510 -1.1419 11 6 5.3948 -0.6797 -1.5518 12 6 5.1865 -2.2019 -1.5743 13 6 6.4463 -3.0585 -1.5485 14 7 5.7311 -3.9368 -2.4995 15 6 5.8325 -5.2368 -2.8402 16 8 5.1494 -5.6842 -3.7406 17 6 6.7740 -6.1183 -2.1190 18 6 7.8961 -5.5784 -1.4871 19 6 8.7713 -6.4052 -0.8150 20 6 8.5415 -7.7691 -0.7650 21 6 7.4323 -8.3137 -1.3893 22 9 7.2147 -9.6461 -1.3368 23 6 6.5435 -7.4945 -2.0631 24 17 5.1489 -8.1760 -2.8406 25 6 4.8603 -2.8208 -2.9280 26 6 4.1739 -2.4385 -0.4433 27 1 -0.4850 -0.8368 -0.0733 28 1 3.4525 0.1721 -2.0266 29 1 4.1082 0.6825 -0.4476 30 1 5.6717 -0.3129 -2.5401 31 1 6.1458 -0.4034 -0.8116 32 1 7.3216 -2.5681 -1.9743 33 1 6.6437 -3.5232 -0.5825 34 1 8.0784 -4.5145 -1.5249 35 1 9.6389 -5.9872 -0.3260 36 1 9.2306 -8.4113 -0.2366 37 1 3.8129 -3.0987 -3.0447 38 1 5.2488 -2.2564 -3.7758 39 1 4.6821 -2.4960 0.5193 40 1 3.6044 -3.3492 -0.6284 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073012508.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:53 Heat of formation + Delta-G solvation = 7.042950 kcal Electronic energy + Delta-G solvation = -26792.647480 eV Core-core repulsion = 22742.884775 eV Total energy + Delta-G solvation = -4049.762704 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.12122 -42.06600 -40.47094 -39.01002 -37.69042 -37.42629 -34.47323 -32.76688 -31.76770 -31.38523 -30.09993 -27.90368 -27.43095 -25.43259 -24.35019 -23.77919 -22.64403 -21.12288 -20.01913 -19.36400 -18.94720 -17.99815 -17.77247 -17.19710 -17.04336 -16.97096 -16.76301 -16.50833 -16.25018 -15.50494 -15.35897 -15.07782 -14.92956 -14.50461 -14.33385 -14.13061 -13.95580 -13.54251 -13.40797 -13.18319 -13.06899 -12.98028 -12.81095 -12.62989 -12.42820 -12.17799 -12.09878 -11.89174 -11.60620 -11.32399 -11.03522 -10.76327 -10.49050 -10.22526 -9.87993 -9.74151 -9.11739 -8.67559 -5.41708 -0.50632 -0.16987 0.89814 1.44562 1.55461 1.55762 1.65173 1.77313 2.42129 2.60768 2.85949 3.00408 3.21077 3.26863 3.48955 3.54161 3.67981 3.72456 3.94156 3.99526 4.10104 4.18209 4.36257 4.43442 4.51269 4.54583 4.62956 4.72842 4.77387 4.79594 4.84062 4.90540 4.99883 5.01466 5.06317 5.09138 5.21580 5.34331 5.55708 5.56058 6.09493 6.57193 6.83865 6.96150 7.48039 8.11278 8.84174 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.002966 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.451905 B = 9438.697639 C = 9913.857929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.079 4.079 3 Si 1.100 2.900 4 H -0.317 1.317 5 H -0.279 1.279 6 H -0.236 1.236 7 C -0.321 4.321 8 H 0.034 0.966 9 N -0.633 5.633 10 C 0.102 3.898 11 C -0.096 4.096 12 C -0.099 4.099 13 C 0.124 3.876 14 N -0.636 5.636 15 C 0.564 3.436 16 O -0.567 6.567 17 C -0.113 4.113 18 C -0.080 4.080 19 C -0.072 4.072 20 C -0.107 4.107 21 C 0.082 3.918 22 F -0.135 7.135 23 C -0.060 4.060 24 Cl -0.054 7.054 25 C 0.125 3.875 26 C 0.157 3.843 27 H 0.244 0.756 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.149 0.851 33 H 0.109 0.891 34 H 0.177 0.823 35 H 0.198 0.802 36 H 0.183 0.817 37 H 0.042 0.958 38 H 0.118 0.882 39 H 0.045 0.955 40 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.683 -9.789 -2.074 31.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.272 4.272 3 Si 0.926 3.074 4 H -0.246 1.246 5 H -0.206 1.206 6 H -0.161 1.161 7 C -0.449 4.449 8 H 0.053 0.947 9 N -0.360 5.360 10 C -0.022 4.022 11 C -0.134 4.134 12 C -0.101 4.101 13 C 0.004 3.996 14 N -0.370 5.370 15 C 0.355 3.645 16 O -0.447 6.447 17 C -0.116 4.116 18 C -0.098 4.098 19 C -0.089 4.089 20 C -0.126 4.126 21 C 0.062 3.938 22 F -0.114 7.114 23 C -0.088 4.088 24 Cl -0.025 7.025 25 C 0.003 3.997 26 C 0.032 3.968 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.166 0.834 33 H 0.127 0.873 34 H 0.194 0.806 35 H 0.215 0.785 36 H 0.200 0.800 37 H 0.061 0.939 38 H 0.136 0.864 39 H 0.063 0.937 40 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 28.927 -8.751 -2.583 30.332 hybrid contribution -1.922 -2.728 -0.096 3.338 sum 27.006 -11.479 -2.678 29.466 Atomic orbital electron populations 1.71021 1.07565 1.28194 1.53454 1.27220 0.96124 1.04784 0.99096 0.83626 0.73160 0.71471 0.79192 1.24631 1.20591 1.16069 1.19932 0.89496 0.96144 1.39342 0.94750 1.44983 1.12220 1.10168 1.68676 1.22213 0.94142 0.90901 0.94939 1.22417 0.94927 0.91431 1.04637 1.22354 0.96492 0.96837 0.94386 1.23581 0.95472 0.86436 0.94135 1.50113 1.37969 1.06445 1.42476 1.18098 0.82477 0.81306 0.82658 1.90832 1.46827 1.74858 1.32194 1.19628 0.98770 0.90610 1.02629 1.22036 0.91083 1.03038 0.93637 1.21677 0.99912 0.91166 0.96158 1.21839 0.94841 0.97929 0.97970 1.17628 0.96895 0.77427 1.01831 1.91531 1.94752 1.30261 1.94820 1.21346 0.92392 0.93645 1.01453 1.98419 1.40149 1.84560 1.79385 1.23064 0.94663 0.84054 0.97920 1.21254 0.90540 0.88900 0.96110 0.94683 0.95519 0.95521 0.87114 0.86982 0.83380 0.87289 0.80580 0.78492 0.79972 0.93910 0.86405 0.93688 0.97083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.13 13.70 21.65 0.30 -62.84 16 2 C -0.08 -4.78 5.46 84.86 0.46 -4.31 16 3 Si 1.10 51.80 24.78 68.60 1.70 53.50 16 4 H -0.32 -15.68 7.11 99.48 0.71 -14.98 16 5 H -0.28 -12.18 7.10 99.48 0.71 -11.48 16 6 H -0.24 -9.40 5.23 99.48 0.52 -8.88 16 7 C -0.32 -18.91 10.48 84.03 0.88 -18.03 16 8 H 0.03 2.25 8.06 -2.91 -0.02 2.23 16 9 N -0.63 -29.53 3.35 -692.86 -2.32 -31.86 16 10 C 0.10 3.78 4.60 86.80 0.40 4.18 16 11 C -0.10 -2.06 6.36 31.36 0.20 -1.87 16 12 C -0.10 -2.37 0.99 -52.08 -0.05 -2.42 16 13 C 0.12 1.70 5.65 85.90 0.49 2.18 16 14 N -0.64 -15.26 3.61 -867.10 -3.13 -18.39 16 15 C 0.56 16.51 7.69 86.77 0.67 17.18 16 16 O -0.57 -21.85 15.29 -3.90 -0.06 -21.91 16 17 C -0.11 -2.52 5.84 -20.08 -0.12 -2.64 16 18 C -0.08 -0.88 8.71 22.52 0.20 -0.68 16 19 C -0.07 -0.41 10.03 22.23 0.22 -0.18 16 20 C -0.11 -1.04 10.02 22.36 0.22 -0.82 16 21 C 0.08 1.60 7.27 22.36 0.16 1.77 16 22 F -0.14 -2.98 16.83 44.97 0.76 -2.22 16 23 C -0.06 -1.51 6.35 22.65 0.14 -1.37 16 24 Cl -0.05 -1.72 26.03 -2.72 -0.07 -1.79 16 25 C 0.12 3.33 8.16 85.90 0.70 4.03 16 26 C 0.16 5.72 6.65 86.36 0.57 6.29 16 27 H 0.24 16.36 8.73 -92.71 -0.81 15.56 16 28 H 0.03 1.08 6.95 -2.39 -0.02 1.07 16 29 H 0.03 1.02 4.22 -2.38 -0.01 1.01 16 30 H 0.11 1.69 7.99 -2.39 -0.02 1.67 16 31 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.15 0.60 8.03 -2.39 -0.02 0.58 16 33 H 0.11 1.13 7.23 -2.39 -0.02 1.11 16 34 H 0.18 0.82 5.24 -2.91 -0.02 0.81 16 35 H 0.20 -0.72 8.06 -2.91 -0.02 -0.75 16 36 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 37 H 0.04 1.53 8.13 -2.39 -0.02 1.51 16 38 H 0.12 2.43 8.04 -2.39 -0.02 2.42 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.01 0.46 8.08 -2.39 -0.02 0.44 16 Total: -1.00 -89.33 340.35 3.18 -86.15 By element: Atomic # 1 Polarization: -4.83 SS G_CDS: 0.86 Total: -3.97 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 5.15 Total: 3.32 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -5.16 Total: -113.08 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.06 Total: -21.91 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.76 Total: -2.22 kcal Atomic # 14 Polarization: 51.80 SS G_CDS: 1.70 Total: 53.50 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.07 Total: -1.79 kcal Total: -89.33 3.18 -86.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073012508.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.198 kcal (2) G-P(sol) polarization free energy of solvation -89.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds