Wall clock time and date at job start Tue Mar 31 2020 20:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00024 * 2 1 4 4 H 1.48510 * 109.47072 * 269.99781 * 3 2 1 5 5 H 1.48498 * 109.47337 * 29.99686 * 3 2 1 6 6 H 1.48503 * 109.47424 * 150.00018 * 3 2 1 7 7 C 1.38815 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99878 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99682 * 0.02562 * 7 2 1 10 10 C 1.47143 * 125.58000 * 0.02562 * 9 7 2 11 11 C 1.54640 * 107.37446 * 179.04195 * 10 9 7 12 12 C 1.53511 * 102.70369 * 339.38759 * 11 10 9 13 13 C 1.51779 * 116.99915 * 164.16230 * 12 11 10 14 14 N 1.47398 * 87.51446 * 92.92585 * 13 12 11 15 15 C 1.34777 * 135.85060 * 205.65844 * 14 13 12 16 16 O 1.21579 * 120.00248 * 0.02562 * 15 14 13 17 17 C 1.47620 * 119.99864 * 180.02562 * 15 14 13 18 18 C 1.39886 * 120.17622 * 270.00351 * 17 15 14 19 19 F 1.35103 * 120.10766 * 359.97305 * 18 17 15 20 20 C 1.38243 * 119.79429 * 180.02562 * 18 17 15 21 21 C 1.38284 * 120.15461 * 0.02562 * 20 18 17 22 22 C 1.38355 * 120.36056 * 359.97438 * 21 20 18 23 23 C 1.38074 * 120.20345 * 0.25717 * 22 21 20 24 24 Cl 1.73595 * 120.07955 * 179.72085 * 23 22 21 25 25 C 1.47389 * 88.29466 * 25.91926 * 14 13 12 26 26 C 1.47754 * 125.57804 * 179.97438 * 9 7 2 27 27 H 0.97001 * 119.99880 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.86819 * 59.59700 * 10 9 7 29 29 H 1.08992 * 109.87018 * 298.49187 * 10 9 7 30 30 H 1.09002 * 110.76262 * 221.07848 * 11 10 9 31 31 H 1.08998 * 110.75879 * 97.68916 * 11 10 9 32 32 H 1.09001 * 113.54454 * 338.27166 * 13 12 11 33 33 H 1.09003 * 113.61047 * 207.59354 * 13 12 11 34 34 H 1.07998 * 119.92268 * 179.97438 * 20 18 17 35 35 H 1.08002 * 119.82219 * 180.02562 * 21 20 18 36 36 H 1.08002 * 119.89534 * 179.97438 * 22 21 20 37 37 H 1.09004 * 113.53886 * 88.74228 * 25 14 13 38 38 H 1.08993 * 113.54074 * 219.41665 * 25 14 13 39 39 H 1.08995 * 110.40663 * 83.54901 * 26 9 7 40 40 H 1.08998 * 110.40310 * 321.12428 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1389 -2.5311 -0.0005 11 6 -0.4551 -4.0446 -0.0248 12 6 0.8475 -4.6530 -0.5630 13 6 1.0382 -6.1473 -0.3778 14 7 0.4473 -6.3237 -1.7166 15 6 -0.2185 -7.3042 -2.3583 16 8 -0.4491 -8.3546 -1.7910 17 6 -0.6677 -7.1029 -3.7500 18 6 -1.9301 -6.5590 -4.0097 19 9 -2.7437 -6.2161 -2.9870 20 6 -2.3430 -6.3744 -5.3160 21 6 -1.5119 -6.7264 -6.3636 22 6 -0.2620 -7.2649 -6.1141 23 6 0.1635 -7.4601 -4.8152 24 17 1.7294 -8.1427 -4.5059 25 6 0.9072 -4.9638 -2.0504 26 6 1.9364 -3.7334 0.0005 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5574 -2.0511 -0.8853 29 1 -0.5558 -2.0800 0.8998 30 1 -1.2867 -4.2549 -0.6973 31 1 -0.6667 -4.4112 0.9797 32 1 0.4316 -6.5675 0.4245 33 1 2.0837 -6.4502 -0.3200 34 1 -3.3174 -5.9550 -5.5188 35 1 -1.8397 -6.5794 -7.3821 36 1 0.3808 -7.5375 -6.9380 37 1 1.9164 -4.9341 -2.4613 38 1 0.1915 -4.3958 -2.6446 39 1 2.1980 -4.0320 1.0156 40 1 2.8177 -3.7506 -0.6407 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073143870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:39 Heat of formation + Delta-G solvation = 15.017866 kcal Electronic energy + Delta-G solvation = -27129.459382 eV Core-core repulsion = 23080.042496 eV Total energy + Delta-G solvation = -4049.416886 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.22500 -40.80321 -39.50714 -37.97488 -36.82853 -35.68263 -32.36434 -31.72890 -30.89842 -29.46893 -28.66521 -26.08258 -25.94116 -24.27056 -23.30972 -23.15788 -20.35068 -19.96625 -18.43859 -18.07834 -17.28806 -17.11647 -16.72939 -16.42592 -15.75295 -15.45813 -15.27010 -15.07792 -14.74069 -14.36802 -13.97871 -13.82651 -13.53712 -13.39731 -13.10731 -12.55220 -12.45267 -12.32040 -12.01463 -11.92871 -11.83976 -11.73567 -11.38889 -11.02749 -10.94501 -10.70017 -10.49467 -10.26201 -10.12507 -9.90470 -9.78304 -9.63777 -9.37372 -9.13873 -8.63045 -8.61539 -6.85954 -5.73101 -3.06935 0.43521 0.58937 1.61724 2.42816 2.71414 3.00770 3.38621 3.44022 3.45893 3.77496 4.08811 4.34695 4.45577 4.51587 4.61322 4.70406 4.89580 4.94960 5.20391 5.31326 5.46002 5.48627 5.51051 5.55069 5.64562 5.66035 5.72986 5.75476 5.81409 5.86448 6.14322 6.21999 6.22459 6.44605 6.51540 6.64502 6.68703 7.53846 7.60243 7.69428 7.80767 8.02500 8.22797 9.19528 9.79594 10.45150 11.38436 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.014862 B = 0.003294 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.532947 B = 8498.686395 C = 8745.254901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.180 3.820 11 C -0.118 4.118 12 C -0.104 4.104 13 C 0.121 3.879 14 N -0.630 5.630 15 C 0.592 3.408 16 O -0.528 6.528 17 C -0.144 4.144 18 C 0.148 3.852 19 F -0.119 7.119 20 C -0.150 4.150 21 C -0.064 4.064 22 C -0.123 4.123 23 C 0.019 3.981 24 Cl -0.042 7.042 25 C 0.121 3.879 26 C 0.155 3.845 27 H 0.252 0.748 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.028 0.972 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.758 -14.745 -13.001 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.056 3.944 11 C -0.156 4.156 12 C -0.106 4.106 13 C -0.001 4.001 14 N -0.363 5.363 15 C 0.379 3.621 16 O -0.405 6.405 17 C -0.149 4.149 18 C 0.127 3.873 19 F -0.097 7.097 20 C -0.169 4.169 21 C -0.083 4.083 22 C -0.142 4.142 23 C -0.009 4.009 24 Cl -0.013 7.013 25 C -0.002 4.002 26 C 0.028 3.972 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.167 0.833 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.045 0.955 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.939 -15.286 -12.711 19.975 hybrid contribution 0.413 0.923 0.108 1.017 sum -1.527 -14.363 -12.602 19.169 Atomic orbital electron populations 1.69964 1.04883 1.25039 1.57003 1.24790 0.95686 0.97631 1.02210 0.86136 0.78612 0.83558 0.77541 1.21639 1.21704 1.20691 1.19047 0.90436 0.82319 1.43888 0.90385 1.44541 1.01595 0.99659 1.87322 1.21219 0.84226 0.87794 1.01196 1.22482 0.94140 0.99217 0.99740 1.22180 1.00190 0.93353 0.94856 1.22840 0.98520 0.94353 0.84352 1.49747 1.53668 1.15978 1.16943 1.17189 0.78324 0.82370 0.84188 1.90816 1.57226 1.25537 1.66891 1.19784 0.94909 1.05681 0.94527 1.17488 0.87417 0.97235 0.85144 1.91600 1.70934 1.89262 1.57951 1.21256 1.02356 1.03018 0.90225 1.21113 0.92334 0.95180 0.99624 1.21087 0.97392 1.00998 0.94702 1.20657 0.88065 0.98973 0.93182 1.98417 1.24095 1.82684 1.96099 1.22941 1.00072 0.79380 0.97763 1.21128 0.93107 0.85697 0.97292 0.93750 0.93544 0.93753 0.92059 0.91692 0.90140 0.89406 0.83262 0.83419 0.83552 0.89224 0.90266 0.95451 0.93900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.46 10.30 55.49 0.57 -25.89 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.23 -6.14 10.28 -15.06 -0.15 -6.29 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -14.68 3.41 -170.54 -0.58 -15.26 16 10 C 0.18 4.22 5.39 -2.83 -0.02 4.21 16 11 C -0.12 -2.16 6.40 -25.60 -0.16 -2.32 16 12 C -0.10 -1.71 1.06 -155.22 -0.16 -1.87 16 13 C 0.12 1.77 8.03 -7.47 -0.06 1.71 16 14 N -0.63 -9.76 3.70 -186.92 -0.69 -10.45 16 15 C 0.59 9.80 6.20 -12.43 -0.08 9.73 16 16 O -0.53 -10.34 17.88 5.30 0.09 -10.25 16 17 C -0.14 -2.01 5.45 -104.88 -0.57 -2.58 16 18 C 0.15 1.89 7.29 -38.96 -0.28 1.60 16 19 F -0.12 -1.75 16.83 2.25 0.04 -1.72 16 20 C -0.15 -1.35 10.01 -39.56 -0.40 -1.74 16 21 C -0.06 -0.45 10.03 -39.52 -0.40 -0.85 16 22 C -0.12 -1.02 9.81 -39.60 -0.39 -1.41 16 23 C 0.02 0.22 6.35 -39.07 -0.25 -0.03 16 24 Cl -0.04 -0.50 28.04 -51.86 -1.45 -1.95 16 25 C 0.12 1.82 7.76 -7.32 -0.06 1.77 16 26 C 0.15 2.93 6.70 -3.22 -0.02 2.91 16 27 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.05 1.21 7.38 -51.93 -0.38 0.82 16 29 H 0.04 1.16 7.49 -51.93 -0.39 0.77 16 30 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.08 1.17 8.13 -51.93 -0.42 0.75 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 36 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.09 1.24 8.06 -51.93 -0.42 0.82 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.04 0.77 8.00 -51.93 -0.42 0.36 16 LS Contribution 357.31 15.07 5.38 5.38 Total: -1.00 -32.50 357.31 -9.71 -42.21 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -4.95 Total: -3.19 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -3.09 Total: 4.54 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.70 Total: -51.60 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.45 Total: -1.95 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.50 -9.71 -42.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073143870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.225 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds