Wall clock time and date at job start Tue Mar 31 2020 20:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00024 * 2 1 4 4 H 1.48510 * 109.47072 * 269.99781 * 3 2 1 5 5 H 1.48498 * 109.47337 * 29.99686 * 3 2 1 6 6 H 1.48503 * 109.47424 * 150.00018 * 3 2 1 7 7 C 1.38815 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99878 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99682 * 0.02562 * 7 2 1 10 10 C 1.47143 * 125.58000 * 0.02562 * 9 7 2 11 11 C 1.54640 * 107.37446 * 179.04195 * 10 9 7 12 12 C 1.53511 * 102.70369 * 339.38759 * 11 10 9 13 13 C 1.51779 * 116.99915 * 164.16230 * 12 11 10 14 14 N 1.47398 * 87.51446 * 92.92585 * 13 12 11 15 15 C 1.34777 * 135.85060 * 205.65844 * 14 13 12 16 16 O 1.21579 * 120.00248 * 0.02562 * 15 14 13 17 17 C 1.47620 * 119.99864 * 180.02562 * 15 14 13 18 18 C 1.39886 * 120.17622 * 270.00351 * 17 15 14 19 19 F 1.35103 * 120.10766 * 359.97305 * 18 17 15 20 20 C 1.38243 * 119.79429 * 180.02562 * 18 17 15 21 21 C 1.38284 * 120.15461 * 0.02562 * 20 18 17 22 22 C 1.38355 * 120.36056 * 359.97438 * 21 20 18 23 23 C 1.38074 * 120.20345 * 0.25717 * 22 21 20 24 24 Cl 1.73595 * 120.07955 * 179.72085 * 23 22 21 25 25 C 1.47389 * 88.29466 * 25.91926 * 14 13 12 26 26 C 1.47754 * 125.57804 * 179.97438 * 9 7 2 27 27 H 0.97001 * 119.99880 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.86819 * 59.59700 * 10 9 7 29 29 H 1.08992 * 109.87018 * 298.49187 * 10 9 7 30 30 H 1.09002 * 110.76262 * 221.07848 * 11 10 9 31 31 H 1.08998 * 110.75879 * 97.68916 * 11 10 9 32 32 H 1.09001 * 113.54454 * 338.27166 * 13 12 11 33 33 H 1.09003 * 113.61047 * 207.59354 * 13 12 11 34 34 H 1.07998 * 119.92268 * 179.97438 * 20 18 17 35 35 H 1.08002 * 119.82219 * 180.02562 * 21 20 18 36 36 H 1.08002 * 119.89534 * 179.97438 * 22 21 20 37 37 H 1.09004 * 113.53886 * 88.74228 * 25 14 13 38 38 H 1.08993 * 113.54074 * 219.41665 * 25 14 13 39 39 H 1.08995 * 110.40663 * 83.54901 * 26 9 7 40 40 H 1.08998 * 110.40310 * 321.12428 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1389 -2.5311 -0.0005 11 6 -0.4551 -4.0446 -0.0248 12 6 0.8475 -4.6530 -0.5630 13 6 1.0382 -6.1473 -0.3778 14 7 0.4473 -6.3237 -1.7166 15 6 -0.2185 -7.3042 -2.3583 16 8 -0.4491 -8.3546 -1.7910 17 6 -0.6677 -7.1029 -3.7500 18 6 -1.9301 -6.5590 -4.0097 19 9 -2.7437 -6.2161 -2.9870 20 6 -2.3430 -6.3744 -5.3160 21 6 -1.5119 -6.7264 -6.3636 22 6 -0.2620 -7.2649 -6.1141 23 6 0.1635 -7.4601 -4.8152 24 17 1.7294 -8.1427 -4.5059 25 6 0.9072 -4.9638 -2.0504 26 6 1.9364 -3.7334 0.0005 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5574 -2.0511 -0.8853 29 1 -0.5558 -2.0800 0.8998 30 1 -1.2867 -4.2549 -0.6973 31 1 -0.6667 -4.4112 0.9797 32 1 0.4316 -6.5675 0.4245 33 1 2.0837 -6.4502 -0.3200 34 1 -3.3174 -5.9550 -5.5188 35 1 -1.8397 -6.5794 -7.3821 36 1 0.3808 -7.5375 -6.9380 37 1 1.9164 -4.9341 -2.4613 38 1 0.1915 -4.3958 -2.6446 39 1 2.1980 -4.0320 1.0156 40 1 2.8177 -3.7506 -0.6407 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073143870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:38 Heat of formation + Delta-G solvation = -4.089975 kcal Electronic energy + Delta-G solvation = -27130.287960 eV Core-core repulsion = 23080.042496 eV Total energy + Delta-G solvation = -4050.245464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.20875 -42.08132 -40.48219 -39.17435 -37.65503 -37.35336 -34.13828 -32.77614 -31.64870 -31.14159 -30.18584 -27.56115 -27.27567 -25.80713 -24.46651 -23.96167 -22.15791 -21.13849 -19.84212 -19.04868 -18.61349 -18.30081 -18.01025 -17.64328 -16.82258 -16.73504 -16.52165 -16.30989 -16.02603 -15.68248 -15.57945 -14.99854 -14.58054 -14.39809 -14.29743 -14.14915 -13.76909 -13.74169 -13.37589 -13.23266 -12.87769 -12.80817 -12.73670 -12.52890 -12.31844 -12.25409 -12.02426 -11.97364 -11.86210 -11.71272 -11.29431 -11.12707 -10.66639 -10.19778 -9.91747 -9.89633 -8.85671 -7.80628 -5.15815 -0.35515 -0.16560 0.79368 1.22268 1.49920 1.51106 1.59542 1.60435 2.24702 2.52987 2.94619 3.01899 3.25457 3.42349 3.52015 3.67950 3.73351 3.81107 3.99306 4.07119 4.15889 4.17402 4.33578 4.45749 4.50311 4.58762 4.63961 4.67010 4.78311 4.82897 4.89068 4.96163 4.99743 5.07629 5.12832 5.17482 5.50843 5.53274 5.66064 5.78756 6.22210 6.45590 6.79201 7.13653 7.81005 8.45576 9.30008 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.014862 B = 0.003294 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.532947 B = 8498.686395 C = 8745.254901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.066 4.066 3 Si 0.975 3.025 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.268 1.268 7 C -0.236 4.236 8 H 0.088 0.912 9 N -0.625 5.625 10 C 0.193 3.807 11 C -0.103 4.103 12 C -0.097 4.097 13 C 0.126 3.874 14 N -0.631 5.631 15 C 0.591 3.409 16 O -0.569 6.569 17 C -0.174 4.174 18 C 0.116 3.884 19 F -0.141 7.141 20 C -0.142 4.142 21 C -0.044 4.044 22 C -0.112 4.112 23 C 0.005 3.995 24 Cl -0.051 7.051 25 C 0.128 3.872 26 C 0.154 3.846 27 H 0.245 0.755 28 H 0.012 0.988 29 H 0.006 0.994 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.174 0.826 35 H 0.196 0.804 36 H 0.179 0.821 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.618 -15.522 -15.458 21.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.259 4.259 3 Si 0.804 3.196 4 H -0.213 1.213 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.365 4.365 8 H 0.106 0.894 9 N -0.351 5.351 10 C 0.068 3.932 11 C -0.141 4.141 12 C -0.099 4.099 13 C 0.005 3.995 14 N -0.363 5.363 15 C 0.380 3.620 16 O -0.449 6.449 17 C -0.179 4.179 18 C 0.096 3.904 19 F -0.120 7.120 20 C -0.161 4.161 21 C -0.061 4.061 22 C -0.130 4.130 23 C -0.023 4.023 24 Cl -0.022 7.022 25 C 0.006 3.994 26 C 0.029 3.971 27 H 0.054 0.946 28 H 0.030 0.970 29 H 0.024 0.976 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.133 0.867 34 H 0.192 0.808 35 H 0.213 0.787 36 H 0.196 0.804 37 H 0.128 0.872 38 H 0.088 0.912 39 H 0.056 0.944 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.762 -16.082 -15.171 22.122 hybrid contribution 0.054 1.144 0.812 1.404 sum -0.708 -14.938 -14.359 20.732 Atomic orbital electron populations 1.70191 1.06363 1.25098 1.58626 1.25605 0.96473 1.00924 1.02863 0.85119 0.77681 0.79355 0.77428 1.21284 1.22600 1.19274 1.19481 0.91140 0.83460 1.42432 0.89440 1.44815 1.02057 1.01129 1.87122 1.20877 0.84090 0.90593 0.97677 1.22263 0.95451 0.95744 1.00680 1.21984 0.97782 0.94211 0.95924 1.22896 1.00118 0.92294 0.84222 1.49773 1.53410 1.15902 1.17232 1.17632 0.77478 0.81706 0.85199 1.90774 1.58769 1.27095 1.68260 1.19728 0.96218 1.08411 0.93496 1.17923 0.87311 0.99033 0.86170 1.91536 1.71489 1.89763 1.59203 1.21658 1.03651 1.01887 0.88883 1.21693 0.90961 0.92335 1.01154 1.21561 0.98158 0.99296 0.93990 1.20876 0.87717 0.99727 0.93940 1.98408 1.24613 1.82899 1.96277 1.22933 1.00882 0.78970 0.96583 1.21287 0.94045 0.83522 0.98275 0.94593 0.97024 0.97611 0.91855 0.90677 0.90070 0.86701 0.80820 0.78701 0.80411 0.87212 0.91179 0.94435 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.75 10.30 21.65 0.22 -56.52 16 2 C -0.07 -3.66 5.49 84.86 0.47 -3.20 16 3 Si 0.98 44.77 29.55 68.60 2.03 46.80 16 4 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.24 -12.70 10.28 84.03 0.86 -11.83 16 8 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.62 -30.55 3.41 -693.45 -2.36 -32.92 16 10 C 0.19 9.39 5.39 86.82 0.47 9.86 16 11 C -0.10 -3.84 6.40 31.32 0.20 -3.64 16 12 C -0.10 -3.11 1.06 -52.62 -0.06 -3.16 16 13 C 0.13 3.48 8.03 83.67 0.67 4.16 16 14 N -0.63 -19.13 3.70 -863.56 -3.19 -22.32 16 15 C 0.59 19.63 6.20 86.72 0.54 20.17 16 16 O -0.57 -22.73 17.88 -3.96 -0.07 -22.80 16 17 C -0.17 -4.76 5.45 -20.03 -0.11 -4.87 16 18 C 0.12 2.90 7.29 22.67 0.17 3.07 16 19 F -0.14 -4.28 16.83 44.97 0.76 -3.52 16 20 C -0.14 -2.18 10.01 22.28 0.22 -1.95 16 21 C -0.04 -0.42 10.03 22.31 0.22 -0.20 16 22 C -0.11 -1.45 9.81 22.26 0.22 -1.23 16 23 C 0.00 0.11 6.35 22.60 0.14 0.25 16 24 Cl -0.05 -1.13 28.04 -2.72 -0.08 -1.21 16 25 C 0.13 3.75 7.76 83.77 0.65 4.40 16 26 C 0.15 5.64 6.70 86.23 0.58 6.22 16 27 H 0.24 14.27 8.31 -92.71 -0.77 13.50 16 28 H 0.01 0.63 7.38 -2.39 -0.02 0.62 16 29 H 0.01 0.31 7.49 -2.39 -0.02 0.30 16 30 H 0.06 2.33 8.07 -2.39 -0.02 2.31 16 31 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.08 2.26 8.13 -2.39 -0.02 2.24 16 33 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 35 H 0.20 0.10 8.06 -2.91 -0.02 0.08 16 36 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.11 2.79 8.06 -2.38 -0.02 2.77 16 38 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.06 2.00 8.00 -2.39 -0.02 1.98 16 Total: -1.00 -74.69 357.31 3.62 -71.07 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: 1.07 Total: 3.39 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 5.24 Total: 18.03 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -5.33 Total: -111.76 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.07 Total: -22.80 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.76 Total: -3.52 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -74.69 3.62 -71.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073143870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.983 kcal (2) G-P(sol) polarization free energy of solvation -74.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds