Wall clock time and date at job start Tue Mar 31 2020 20:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86791 * 119.99994 * 2 1 4 4 H 1.48504 * 109.47260 * 275.00303 * 3 2 1 5 5 H 1.48505 * 109.47329 * 35.00054 * 3 2 1 6 6 H 1.48503 * 109.47141 * 155.00261 * 3 2 1 7 7 C 1.38808 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00474 * 174.87458 * 7 2 1 9 9 N 1.36944 * 119.99944 * 354.87235 * 7 2 1 10 10 C 1.46707 * 125.32152 * 185.00061 * 9 7 2 11 11 C 1.54034 * 106.82848 * 161.80196 * 10 9 7 12 12 H 1.09000 * 113.43283 * 262.66875 * 11 10 9 13 13 C 1.55128 * 108.26329 * 135.80594 * 11 10 9 14 14 C 1.54856 * 101.77493 * 285.18656 * 13 11 10 15 15 N 1.47403 * 104.81161 * 322.80904 * 14 13 11 16 16 C 1.34770 * 125.58970 * 204.61274 * 15 14 13 17 17 O 1.21583 * 119.99917 * 184.04895 * 16 15 14 18 18 C 1.47627 * 120.00296 * 3.77139 * 16 15 14 19 19 C 1.39697 * 120.15326 * 324.36856 * 18 16 15 20 20 C 1.37791 * 119.89367 * 179.67192 * 19 18 16 21 21 C 1.38621 * 120.20280 * 0.62144 * 20 19 18 22 22 Cl 1.73595 * 119.84529 * 179.69453 * 21 20 19 23 23 C 1.38354 * 120.31100 * 359.67842 * 21 20 19 24 24 C 1.38260 * 120.10337 * 359.97438 * 23 21 20 25 25 F 1.35101 * 120.10538 * 180.02562 * 24 23 21 26 26 C 1.46731 * 108.81844 * 24.87471 * 15 14 13 27 27 H 1.08997 * 111.33289 * 235.85921 * 26 15 14 28 28 C 1.46631 * 125.32425 * 4.97996 * 9 7 2 29 29 H 0.97004 * 119.99697 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.98602 * 42.45279 * 10 9 7 31 31 H 1.09008 * 109.98288 * 281.14230 * 10 9 7 32 32 H 1.08994 * 110.96935 * 167.06350 * 13 11 10 33 33 H 1.09005 * 110.96456 * 43.30261 * 13 11 10 34 34 H 1.09008 * 110.36636 * 203.98176 * 14 13 11 35 35 H 1.08990 * 110.37374 * 81.64294 * 14 13 11 36 36 H 1.08006 * 120.05481 * 359.97438 * 19 18 16 37 37 H 1.07994 * 119.90220 * 180.32310 * 20 19 18 38 38 H 1.07999 * 119.95158 * 180.02562 * 23 21 20 39 39 H 1.08998 * 109.75338 * 300.94942 * 28 9 7 40 40 H 1.09003 * 109.75894 * 61.64402 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3920 2.1074 -1.3948 5 1 1.5045 2.6198 0.8031 6 1 3.5966 1.4119 0.5917 7 6 2.0103 -1.2021 -0.0005 8 1 3.0870 -1.2040 -0.0841 9 7 1.3296 -2.3858 0.1049 10 6 1.9468 -3.7117 0.2206 11 6 0.8645 -4.6610 0.7684 12 1 0.9258 -4.8124 1.8461 13 6 0.9189 -5.9810 -0.0447 14 6 0.2645 -5.5554 -1.3822 15 7 -0.8088 -4.6217 -0.9962 16 6 -1.9159 -4.3577 -1.7180 17 8 -2.7025 -3.5123 -1.3374 18 6 -2.1704 -5.0905 -2.9741 19 6 -1.1063 -5.4495 -3.8050 20 6 -1.3494 -6.1393 -4.9727 21 6 -2.6475 -6.4669 -5.3319 22 17 -2.9438 -7.3293 -6.8091 23 6 -3.7082 -6.1102 -4.5183 24 6 -3.4784 -5.4240 -3.3402 25 9 -4.5141 -5.0761 -2.5455 26 6 -0.4712 -4.0221 0.2997 27 1 -1.2647 -4.1825 1.0296 28 6 -0.1299 -2.5260 0.1203 29 1 -0.4850 0.8401 0.0004 30 1 2.7903 -3.6711 0.9096 31 1 2.2813 -4.0536 -0.7589 32 1 0.3372 -6.7635 0.4425 33 1 1.9491 -6.3017 -0.1993 34 1 -0.1531 -6.4231 -1.8932 35 1 0.9933 -5.0536 -2.0184 36 1 -0.0943 -5.1910 -3.5301 37 1 -0.5264 -6.4215 -5.6126 38 1 -4.7173 -6.3687 -4.8035 39 1 -0.5455 -1.9611 0.9547 40 1 -0.5454 -2.1572 -0.8175 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076008653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:11 Heat of formation + Delta-G solvation = -13.389440 kcal Electronic energy + Delta-G solvation = -27402.570080 eV Core-core repulsion = 23351.921360 eV Total energy + Delta-G solvation = -4050.648719 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -49.03849 -40.54461 -39.14294 -37.69118 -36.74390 -34.87996 -32.49397 -31.30995 -30.91759 -30.81303 -28.69750 -26.51067 -24.81032 -24.33967 -23.15788 -22.33608 -20.87524 -19.88911 -19.02900 -17.81655 -17.41486 -16.79985 -16.70444 -16.30170 -15.73429 -15.54280 -14.95053 -14.64665 -14.38593 -14.14008 -13.82620 -13.69181 -13.52488 -13.30827 -13.12740 -12.79405 -12.50132 -12.19921 -11.97027 -11.86330 -11.62305 -11.55022 -11.40127 -11.08996 -11.00177 -10.74371 -10.49311 -10.29116 -10.16330 -9.88440 -9.73298 -9.60492 -9.34054 -9.00147 -8.56733 -8.25617 -6.81033 -5.67717 -3.03766 0.37042 0.75878 1.60640 2.70195 3.11875 3.38300 3.41264 3.46061 3.49099 3.92484 4.30134 4.36790 4.49964 4.57105 4.69370 4.80580 4.89693 5.06141 5.11354 5.42756 5.44085 5.48665 5.51969 5.60427 5.67876 5.69724 5.72068 5.76014 5.81580 5.97533 6.13849 6.25640 6.30607 6.42044 6.51095 6.60638 6.82096 7.55900 7.62950 7.82590 7.90839 8.29437 8.41714 9.23782 9.84964 10.48348 11.42048 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015040 B = 0.003238 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.308571 B = 8643.904593 C = 8986.695661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.236 4.236 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.143 3.857 11 C -0.110 4.110 12 H 0.098 0.902 13 C -0.125 4.125 14 C 0.094 3.906 15 N -0.595 5.595 16 C 0.567 3.433 17 O -0.509 6.509 18 C -0.149 4.149 19 C -0.051 4.051 20 C -0.127 4.127 21 C 0.008 3.992 22 Cl -0.056 7.056 23 C -0.157 4.157 24 C 0.165 3.835 25 F -0.112 7.112 26 C 0.114 3.886 27 H 0.082 0.918 28 C 0.177 3.823 29 H 0.253 0.747 30 H 0.036 0.964 31 H 0.017 0.983 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.056 0.944 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.574 -19.200 -8.883 21.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.364 4.364 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.016 3.984 11 C -0.130 4.130 12 H 0.117 0.883 13 C -0.163 4.163 14 C -0.029 4.029 15 N -0.328 5.328 16 C 0.354 3.646 17 O -0.384 6.384 18 C -0.153 4.153 19 C -0.070 4.070 20 C -0.146 4.146 21 C -0.020 4.020 22 Cl -0.027 7.027 23 C -0.176 4.176 24 C 0.145 3.855 25 F -0.090 7.090 26 C 0.011 3.989 27 H 0.100 0.900 28 C 0.051 3.949 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.172 0.828 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.074 0.926 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.205 -18.534 -8.809 20.770 hybrid contribution 0.222 0.898 -0.133 0.935 sum -2.983 -17.636 -8.942 19.997 Atomic orbital electron populations 1.69998 1.04806 1.25157 1.55979 1.24867 0.95674 0.97739 1.01898 0.86140 0.78631 0.83746 0.77459 1.21703 1.21620 1.20627 1.18990 0.90715 0.82336 1.44344 0.90422 1.44207 1.01388 1.00708 1.86604 1.21301 0.93949 0.86272 0.96851 1.23171 0.95637 0.94356 0.99838 0.88339 1.22782 1.01156 0.97384 0.95000 1.22599 0.89839 0.92446 0.98044 1.48250 1.19662 1.43239 1.21685 1.17438 0.81165 0.83018 0.82944 1.90897 1.46036 1.31725 1.69755 1.20264 0.92794 1.03729 0.98519 1.21532 0.99474 0.93693 0.92283 1.21062 0.95426 1.00403 0.97728 1.20778 0.94191 0.97666 0.89318 1.98395 1.96360 1.74905 1.32996 1.20902 1.00513 1.02386 0.93838 1.17380 0.83371 0.95826 0.88965 1.91612 1.55909 1.89346 1.72166 1.22890 0.95774 0.97129 0.83109 0.89998 1.21407 0.84283 0.87048 1.02122 0.93602 0.94611 0.96537 0.90934 0.89744 0.90769 0.90722 0.82801 0.83571 0.83078 0.92643 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.74 10.27 55.49 0.57 -27.17 16 2 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 3 Si 0.91 22.33 29.56 -169.99 -5.02 17.31 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.24 -6.55 10.24 -15.06 -0.15 -6.71 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.19 3.38 -171.40 -0.58 -15.76 16 10 C 0.14 2.74 6.46 -3.39 -0.02 2.72 16 11 C -0.11 -1.73 4.28 -87.73 -0.38 -2.11 16 12 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 13 C -0.12 -1.43 6.34 -24.63 -0.16 -1.59 16 14 C 0.09 1.17 4.66 -2.57 -0.01 1.16 16 15 N -0.59 -10.18 2.98 -162.99 -0.49 -10.67 16 16 C 0.57 10.62 7.06 -12.43 -0.09 10.53 16 17 O -0.51 -11.87 15.90 5.29 0.08 -11.78 16 18 C -0.15 -2.17 5.53 -104.91 -0.58 -2.75 16 19 C -0.05 -0.57 7.89 -39.20 -0.31 -0.88 16 20 C -0.13 -1.16 9.81 -39.60 -0.39 -1.55 16 21 C 0.01 0.07 6.32 -39.40 -0.25 -0.18 16 22 Cl -0.06 -0.46 28.94 -51.86 -1.50 -1.97 16 23 C -0.16 -1.67 9.79 -39.53 -0.39 -2.05 16 24 C 0.17 2.28 7.24 -38.96 -0.28 2.00 16 25 F -0.11 -1.79 16.13 2.25 0.04 -1.76 16 26 C 0.11 2.19 3.68 -65.80 -0.24 1.94 16 27 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 28 C 0.18 4.44 4.92 -3.19 -0.02 4.42 16 29 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.02 0.31 6.59 -51.92 -0.34 -0.03 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.80 8.07 -51.93 -0.42 0.39 16 34 H 0.07 0.73 6.56 -51.92 -0.34 0.39 16 35 H 0.07 0.94 6.34 -51.93 -0.33 0.62 16 36 H 0.15 1.58 5.42 -52.48 -0.28 1.30 16 37 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 39 H 0.06 1.58 7.19 -51.93 -0.37 1.21 16 40 H 0.05 1.53 6.83 -51.93 -0.35 1.17 16 LS Contribution 339.98 15.07 5.12 5.12 Total: -1.00 -34.05 339.98 -9.66 -43.71 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.53 Total: -1.77 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -3.36 Total: 4.73 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.50 Total: -53.60 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.08 Total: -11.78 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.05 -9.66 -43.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076008653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.317 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds