Wall clock time and date at job start Tue Mar 31 2020 20:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86791 * 119.99994 * 2 1 4 4 H 1.48504 * 109.47260 * 275.00303 * 3 2 1 5 5 H 1.48505 * 109.47329 * 35.00054 * 3 2 1 6 6 H 1.48503 * 109.47141 * 155.00261 * 3 2 1 7 7 C 1.38808 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00474 * 174.87458 * 7 2 1 9 9 N 1.36944 * 119.99944 * 354.87235 * 7 2 1 10 10 C 1.46707 * 125.32152 * 185.00061 * 9 7 2 11 11 C 1.54034 * 106.82848 * 161.80196 * 10 9 7 12 12 H 1.09000 * 113.43283 * 262.66875 * 11 10 9 13 13 C 1.55128 * 108.26329 * 135.80594 * 11 10 9 14 14 C 1.54856 * 101.77493 * 285.18656 * 13 11 10 15 15 N 1.47403 * 104.81161 * 322.80904 * 14 13 11 16 16 C 1.34770 * 125.58970 * 204.61274 * 15 14 13 17 17 O 1.21583 * 119.99917 * 184.04895 * 16 15 14 18 18 C 1.47627 * 120.00296 * 3.77139 * 16 15 14 19 19 C 1.39697 * 120.15326 * 324.36856 * 18 16 15 20 20 C 1.37791 * 119.89367 * 179.67192 * 19 18 16 21 21 C 1.38621 * 120.20280 * 0.62144 * 20 19 18 22 22 Cl 1.73595 * 119.84529 * 179.69453 * 21 20 19 23 23 C 1.38354 * 120.31100 * 359.67842 * 21 20 19 24 24 C 1.38260 * 120.10337 * 359.97438 * 23 21 20 25 25 F 1.35101 * 120.10538 * 180.02562 * 24 23 21 26 26 C 1.46731 * 108.81844 * 24.87471 * 15 14 13 27 27 H 1.08997 * 111.33289 * 235.85921 * 26 15 14 28 28 C 1.46631 * 125.32425 * 4.97996 * 9 7 2 29 29 H 0.97004 * 119.99697 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.98602 * 42.45279 * 10 9 7 31 31 H 1.09008 * 109.98288 * 281.14230 * 10 9 7 32 32 H 1.08994 * 110.96935 * 167.06350 * 13 11 10 33 33 H 1.09005 * 110.96456 * 43.30261 * 13 11 10 34 34 H 1.09008 * 110.36636 * 203.98176 * 14 13 11 35 35 H 1.08990 * 110.37374 * 81.64294 * 14 13 11 36 36 H 1.08006 * 120.05481 * 359.97438 * 19 18 16 37 37 H 1.07994 * 119.90220 * 180.32310 * 20 19 18 38 38 H 1.07999 * 119.95158 * 180.02562 * 23 21 20 39 39 H 1.08998 * 109.75338 * 300.94942 * 28 9 7 40 40 H 1.09003 * 109.75894 * 61.64402 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3920 2.1074 -1.3948 5 1 1.5045 2.6198 0.8031 6 1 3.5966 1.4119 0.5917 7 6 2.0103 -1.2021 -0.0005 8 1 3.0870 -1.2040 -0.0841 9 7 1.3296 -2.3858 0.1049 10 6 1.9468 -3.7117 0.2206 11 6 0.8645 -4.6610 0.7684 12 1 0.9258 -4.8124 1.8461 13 6 0.9189 -5.9810 -0.0447 14 6 0.2645 -5.5554 -1.3822 15 7 -0.8088 -4.6217 -0.9962 16 6 -1.9159 -4.3577 -1.7180 17 8 -2.7025 -3.5123 -1.3374 18 6 -2.1704 -5.0905 -2.9741 19 6 -1.1063 -5.4495 -3.8050 20 6 -1.3494 -6.1393 -4.9727 21 6 -2.6475 -6.4669 -5.3319 22 17 -2.9438 -7.3293 -6.8091 23 6 -3.7082 -6.1102 -4.5183 24 6 -3.4784 -5.4240 -3.3402 25 9 -4.5141 -5.0761 -2.5455 26 6 -0.4712 -4.0221 0.2997 27 1 -1.2647 -4.1825 1.0296 28 6 -0.1299 -2.5260 0.1203 29 1 -0.4850 0.8401 0.0004 30 1 2.7903 -3.6711 0.9096 31 1 2.2813 -4.0536 -0.7589 32 1 0.3372 -6.7635 0.4425 33 1 1.9491 -6.3017 -0.1993 34 1 -0.1531 -6.4231 -1.8932 35 1 0.9933 -5.0536 -2.0184 36 1 -0.0943 -5.1910 -3.5301 37 1 -0.5264 -6.4215 -5.6126 38 1 -4.7173 -6.3687 -4.8035 39 1 -0.5455 -1.9611 0.9547 40 1 -0.5454 -2.1572 -0.8175 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076008653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:10 Heat of formation + Delta-G solvation = -35.272309 kcal Electronic energy + Delta-G solvation = -27403.518992 eV Core-core repulsion = 23351.921360 eV Total energy + Delta-G solvation = -4051.597632 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.14451 -41.85521 -40.21501 -39.07105 -37.55148 -36.59535 -34.12847 -32.63031 -32.29093 -31.76493 -30.33856 -28.03609 -26.66722 -25.48723 -24.12364 -23.48687 -22.55502 -21.19945 -20.45031 -18.96099 -18.80656 -18.39248 -17.83134 -17.56140 -16.87320 -16.82690 -16.47222 -16.04878 -15.71454 -15.56437 -15.25616 -14.77254 -14.73690 -14.51997 -14.31350 -14.14792 -13.93978 -13.65465 -13.35450 -13.01576 -12.97210 -12.82967 -12.72536 -12.49726 -12.39040 -12.13548 -12.10297 -11.86188 -11.79915 -11.59081 -11.41160 -11.09458 -10.72013 -10.21383 -9.97479 -9.66316 -8.89954 -7.84891 -5.23131 -0.58873 -0.10588 0.83282 1.42498 1.45074 1.53031 1.54846 1.83943 2.30258 2.47894 2.97538 3.22195 3.32089 3.44165 3.56932 3.64081 3.77635 3.80619 3.91228 3.98770 4.22062 4.23791 4.41173 4.50379 4.52576 4.58778 4.71600 4.76561 4.85128 4.87133 4.91695 4.92747 5.09359 5.18363 5.27492 5.40881 5.41400 5.46867 5.60507 5.76439 6.18260 6.45642 7.01282 7.07733 7.78638 8.40683 9.23619 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015040 B = 0.003238 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.308571 B = 8643.904593 C = 8986.695661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.072 4.072 3 Si 0.979 3.021 4 H -0.289 1.289 5 H -0.299 1.299 6 H -0.259 1.259 7 C -0.239 4.239 8 H 0.092 0.908 9 N -0.623 5.623 10 C 0.135 3.865 11 C -0.097 4.097 12 H 0.116 0.884 13 C -0.106 4.106 14 C 0.084 3.916 15 N -0.594 5.594 16 C 0.557 3.443 17 O -0.577 6.577 18 C -0.170 4.170 19 C -0.045 4.045 20 C -0.107 4.107 21 C 0.013 3.987 22 Cl -0.035 7.035 23 C -0.146 4.146 24 C 0.140 3.860 25 F -0.136 7.136 26 C 0.116 3.884 27 H 0.074 0.926 28 C 0.196 3.804 29 H 0.242 0.758 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.166 0.834 37 H 0.183 0.817 38 H 0.170 0.830 39 H 0.001 0.999 40 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.210 -22.852 -10.769 25.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.265 4.265 3 Si 0.807 3.193 4 H -0.216 1.216 5 H -0.226 1.226 6 H -0.183 1.183 7 C -0.368 4.368 8 H 0.109 0.891 9 N -0.350 5.350 10 C 0.011 3.989 11 C -0.117 4.117 12 H 0.134 0.866 13 C -0.144 4.144 14 C -0.036 4.036 15 N -0.326 5.326 16 C 0.346 3.654 17 O -0.457 6.457 18 C -0.174 4.174 19 C -0.064 4.064 20 C -0.126 4.126 21 C -0.014 4.014 22 Cl -0.006 7.006 23 C -0.166 4.166 24 C 0.119 3.881 25 F -0.114 7.114 26 C 0.012 3.988 27 H 0.092 0.908 28 C 0.070 3.930 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.115 0.885 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.096 0.904 36 H 0.183 0.817 37 H 0.201 0.799 38 H 0.188 0.812 39 H 0.020 0.980 40 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -0.341 -22.271 -10.708 24.714 hybrid contribution -0.618 1.961 0.343 2.084 sum -0.959 -20.310 -10.365 22.822 Atomic orbital electron populations 1.70311 1.06723 1.24967 1.58223 1.25794 0.96401 1.01579 1.02739 0.85053 0.78011 0.79060 0.77167 1.21599 1.22619 1.18321 1.19498 0.91496 0.83541 1.42296 0.89064 1.44511 1.01593 1.02540 1.86322 1.21617 0.95044 0.84031 0.98212 1.23161 0.91252 0.95816 1.01466 0.86571 1.22840 1.03609 0.95092 0.92877 1.22996 0.88652 0.92611 0.99382 1.48331 1.20293 1.43297 1.20667 1.18231 0.80697 0.82384 0.84070 1.90847 1.48376 1.34729 1.71771 1.20060 0.94323 1.05434 0.97602 1.21634 0.98870 0.93493 0.92383 1.21405 0.96234 0.98212 0.96706 1.20918 0.94129 0.96820 0.89537 1.98414 1.96328 1.74262 1.31579 1.21048 1.01989 1.01089 0.92433 1.17705 0.82712 0.97540 0.90116 1.91547 1.56832 1.89910 1.73110 1.22588 0.97791 0.93781 0.84689 0.90799 1.20894 0.84365 0.90647 0.97103 0.94897 0.93512 0.94510 0.88492 0.86202 0.87188 0.90422 0.81665 0.79948 0.81242 0.98043 0.98495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.17 10.27 21.65 0.22 -61.95 16 2 C -0.07 -4.31 5.48 84.86 0.47 -3.84 16 3 Si 0.98 47.36 29.56 68.60 2.03 49.39 16 4 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 5 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.24 -13.55 10.24 84.03 0.86 -12.69 16 8 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 9 N -0.62 -32.16 3.38 -696.19 -2.35 -34.52 16 10 C 0.14 4.95 6.46 86.69 0.56 5.51 16 11 C -0.10 -2.85 4.28 -8.92 -0.04 -2.88 16 12 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 13 C -0.11 -1.92 6.34 31.96 0.20 -1.72 16 14 C 0.08 1.83 4.66 86.84 0.40 2.24 16 15 N -0.59 -20.52 2.98 -787.84 -2.35 -22.87 16 16 C 0.56 22.01 7.06 86.72 0.61 22.62 16 17 O -0.58 -29.65 15.90 -3.98 -0.06 -29.71 16 18 C -0.17 -4.98 5.53 -20.05 -0.11 -5.09 16 19 C -0.05 -0.90 7.89 22.52 0.18 -0.73 16 20 C -0.11 -1.52 9.81 22.26 0.22 -1.31 16 21 C 0.01 0.21 6.32 22.39 0.14 0.35 16 22 Cl -0.04 -0.46 28.94 -2.72 -0.08 -0.54 16 23 C -0.15 -2.87 9.79 22.30 0.22 -2.65 16 24 C 0.14 3.91 7.24 22.67 0.16 4.08 16 25 F -0.14 -4.64 16.13 44.97 0.73 -3.92 16 26 C 0.12 4.60 3.68 46.25 0.17 4.77 16 27 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 28 C 0.20 10.59 4.92 86.86 0.43 11.01 16 29 H 0.24 15.55 8.31 -92.70 -0.77 14.78 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.04 1.23 6.59 -2.38 -0.02 1.22 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.12 1.46 8.07 -2.38 -0.02 1.44 16 34 H 0.11 1.67 6.56 -2.38 -0.02 1.65 16 35 H 0.08 1.68 6.34 -2.39 -0.02 1.66 16 36 H 0.17 2.88 5.42 -2.91 -0.02 2.86 16 37 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 39 H 0.00 0.09 7.19 -2.39 -0.02 0.07 16 40 H 0.00 -0.20 6.83 -2.39 -0.02 -0.22 16 Total: -1.00 -84.99 339.98 3.69 -81.30 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: 1.09 Total: 3.14 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 4.47 Total: 19.68 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -4.48 Total: -119.34 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.06 Total: -29.71 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.73 Total: -3.92 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.08 Total: -0.54 kcal Total: -84.99 3.69 -81.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076008653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.023 kcal (2) G-P(sol) polarization free energy of solvation -84.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds