Wall clock time and date at job start Tue Mar 31 2020 20:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99959 * 2 1 4 4 H 1.48496 * 109.47046 * 239.99919 * 3 2 1 5 5 H 1.48496 * 109.47268 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46636 * 120.00206 * 3 2 1 7 7 C 1.38813 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99750 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99834 * 359.97438 * 7 2 1 10 10 C 1.46583 * 125.30323 * 180.02562 * 9 7 2 11 11 C 1.53263 * 108.13799 * 177.89927 * 10 9 7 12 12 H 1.09003 * 112.58459 * 222.74966 * 11 10 9 13 13 C 1.54806 * 109.74812 * 95.75413 * 11 10 9 14 14 C 1.54933 * 101.49969 * 212.29300 * 13 11 10 15 15 N 1.48483 * 105.12300 * 37.07516 * 14 13 11 16 16 C 1.34783 * 126.16242 * 156.74639 * 15 14 13 17 17 O 1.21567 * 119.99962 * 175.90579 * 16 15 14 18 18 C 1.47693 * 119.99833 * 355.90669 * 16 15 14 19 19 C 1.39654 * 120.16476 * 35.70630 * 18 16 15 20 20 C 1.37960 * 119.86764 * 179.97438 * 19 18 16 21 21 Cl 1.73599 * 119.90556 * 180.02562 * 20 19 18 22 22 C 1.38566 * 120.19249 * 359.97438 * 20 19 18 23 23 C 1.38190 * 120.32503 * 359.97438 * 22 20 19 24 24 C 1.38324 * 120.13211 * 359.78103 * 23 22 20 25 25 F 1.35094 * 120.09941 * 180.25304 * 24 23 22 26 26 C 1.47213 * 108.30691 * 336.87900 * 15 14 13 27 27 H 1.08994 * 112.28916 * 235.53154 * 26 15 14 28 28 C 1.46601 * 125.30728 * 0.02562 * 9 7 2 29 29 H 0.96999 * 119.99685 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.73702 * 297.57949 * 10 9 7 31 31 H 1.09001 * 109.74001 * 58.22614 * 10 9 7 32 32 H 1.09004 * 111.01645 * 330.35047 * 13 11 10 33 33 H 1.08998 * 111.01964 * 94.23129 * 13 11 10 34 34 H 1.08999 * 110.35526 * 156.08710 * 14 13 11 35 35 H 1.09001 * 110.35390 * 278.37435 * 14 13 11 36 36 H 1.08001 * 120.06597 * 359.97438 * 19 18 16 37 37 H 1.07995 * 119.83819 * 180.02562 * 22 20 19 38 38 H 1.08000 * 119.93584 * 179.97438 * 23 22 20 39 39 H 1.09000 * 109.91982 * 317.17257 * 28 9 7 40 40 H 1.09007 * 109.91352 * 78.45439 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.9379 -3.7199 -0.0005 11 6 0.8148 -4.7614 0.0529 12 1 1.0331 -5.5775 0.7417 13 6 0.4825 -5.2462 -1.3793 14 6 -1.0353 -5.5346 -1.2634 15 7 -1.5648 -4.4712 -0.3726 16 6 -2.8402 -4.0382 -0.3219 17 8 -3.1683 -3.2096 0.5049 18 6 -3.8390 -4.5706 -1.2707 19 6 -3.7820 -5.9066 -1.6734 20 6 -4.7185 -6.3976 -2.5595 21 17 -4.6490 -8.0583 -3.0603 22 6 -5.7151 -5.5693 -3.0502 23 6 -5.7796 -4.2463 -2.6562 24 6 -4.8506 -3.7413 -1.7645 25 9 -4.9174 -2.4492 -1.3758 26 6 -0.4552 -3.9623 0.4502 27 1 -0.6693 -4.0246 1.5171 28 6 -0.1342 -2.5236 -0.0005 29 1 -0.4849 0.8401 0.0004 30 1 2.5232 -3.8559 -0.9099 31 1 2.5825 -3.8287 0.8717 32 1 0.6769 -4.4630 -2.1121 33 1 1.0354 -6.1533 -1.6231 34 1 -1.5079 -5.4785 -2.2440 35 1 -1.2019 -6.5150 -0.8169 36 1 -3.0064 -6.5541 -1.2919 37 1 -6.4455 -5.9597 -3.7433 38 1 -6.5588 -3.6062 -3.0429 39 1 -0.5735 -1.8095 0.6961 40 1 -0.5229 -2.3537 -1.0047 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076011435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:47 Heat of formation + Delta-G solvation = -12.209624 kcal Electronic energy + Delta-G solvation = -27451.887730 eV Core-core repulsion = 23401.290172 eV Total energy + Delta-G solvation = -4050.597559 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.93963 -40.44795 -39.10865 -37.69135 -36.67443 -34.99732 -32.58409 -31.54240 -30.72653 -30.50559 -28.57310 -26.88507 -24.68270 -24.40067 -22.96647 -22.44004 -20.66385 -19.93374 -18.99661 -17.69850 -17.48170 -16.89144 -16.72487 -16.00238 -15.88563 -15.39938 -15.11001 -14.57470 -14.46142 -14.07792 -13.80217 -13.57602 -13.52003 -13.28585 -13.08238 -12.69850 -12.57884 -12.20976 -11.99419 -11.75402 -11.58720 -11.52615 -11.39009 -11.16789 -11.04504 -10.76729 -10.47497 -10.23043 -10.05420 -9.77970 -9.72777 -9.67358 -9.46635 -8.86869 -8.57780 -8.27447 -6.80814 -5.60647 -3.03243 0.44415 0.67487 1.70803 2.70752 3.01179 3.42963 3.43516 3.47270 3.50027 3.92562 4.19861 4.32725 4.51945 4.59323 4.72403 4.80791 4.91895 5.10796 5.18385 5.33927 5.40904 5.47635 5.56927 5.62056 5.63272 5.65206 5.70688 5.78585 5.89912 5.98781 6.18703 6.28881 6.30966 6.50418 6.54003 6.65233 6.85975 7.50319 7.64742 7.80406 7.95709 8.35263 8.43128 9.26059 9.87103 10.48841 11.43696 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015910 B = 0.003570 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.507106 B = 7842.309612 C = 9067.418705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.234 4.234 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.145 3.855 11 C -0.108 4.108 12 H 0.089 0.911 13 C -0.122 4.122 14 C 0.095 3.905 15 N -0.601 5.601 16 C 0.570 3.430 17 O -0.507 6.507 18 C -0.143 4.143 19 C -0.058 4.058 20 C -0.058 4.058 21 Cl -0.061 7.061 22 C -0.064 4.064 23 C -0.150 4.150 24 C 0.162 3.838 25 F -0.109 7.109 26 C 0.114 3.886 27 H 0.085 0.915 28 C 0.165 3.835 29 H 0.254 0.746 30 H 0.026 0.974 31 H 0.024 0.976 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.152 0.848 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.097 0.903 40 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.027 -17.880 -7.310 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.363 4.363 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.019 3.981 11 C -0.128 4.128 12 H 0.107 0.893 13 C -0.160 4.160 14 C -0.027 4.027 15 N -0.335 5.335 16 C 0.357 3.643 17 O -0.382 6.382 18 C -0.148 4.148 19 C -0.077 4.077 20 C -0.085 4.085 21 Cl -0.032 7.032 22 C -0.082 4.082 23 C -0.169 4.169 24 C 0.141 3.859 25 F -0.087 7.087 26 C 0.010 3.990 27 H 0.103 0.897 28 C 0.039 3.961 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.170 0.830 37 H 0.164 0.836 38 H 0.170 0.830 39 H 0.115 0.885 40 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -10.336 -17.245 -6.873 21.248 hybrid contribution 0.422 0.864 -0.134 0.971 sum -9.914 -16.381 -7.007 20.389 Atomic orbital electron populations 1.69908 1.04771 1.25150 1.56249 1.24852 0.95689 0.97776 1.01957 0.86188 0.78402 0.83223 0.77843 1.21211 1.21565 1.21097 1.18973 0.90397 0.82262 1.44628 0.90388 1.44141 1.01500 0.99933 1.87219 1.20992 0.93334 0.85519 0.98287 1.22869 0.95723 0.98009 0.96176 0.89269 1.22803 0.93519 1.01952 0.97708 1.22762 0.95440 0.90391 0.94133 1.48635 1.07384 1.37952 1.39502 1.17384 0.80855 0.82040 0.83999 1.90893 1.78592 1.31749 1.36975 1.20087 0.98268 0.94386 1.02035 1.21348 0.97784 0.94016 0.94567 1.20751 0.99177 0.87018 1.01534 1.98384 1.98122 1.16399 1.90273 1.21026 0.96775 0.92069 0.98371 1.21104 1.00287 0.96289 0.99242 1.17763 0.94238 0.79398 0.94485 1.91648 1.95301 1.32920 1.88822 1.22995 0.83477 0.97942 0.94555 0.89669 1.21678 0.84425 0.89927 1.00047 0.93524 0.95627 0.95801 0.89752 0.90062 0.90690 0.91299 0.83048 0.83568 0.83027 0.88544 0.96285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.02 10.17 55.49 0.56 -27.46 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 3 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.23 -6.63 10.25 -15.06 -0.15 -6.78 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.54 3.37 -172.22 -0.58 -16.13 16 10 C 0.15 2.91 6.66 -3.86 -0.03 2.89 16 11 C -0.11 -1.75 3.91 -88.36 -0.35 -2.10 16 12 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 13 C -0.12 -1.64 6.24 -24.76 -0.15 -1.79 16 14 C 0.10 1.20 5.15 -1.93 -0.01 1.19 16 15 N -0.60 -10.39 2.89 -161.94 -0.47 -10.86 16 16 C 0.57 10.74 7.24 -12.40 -0.09 10.65 16 17 O -0.51 -11.83 16.29 5.31 0.09 -11.74 16 18 C -0.14 -2.10 5.56 -104.92 -0.58 -2.69 16 19 C -0.06 -0.64 7.73 -39.15 -0.30 -0.94 16 20 C -0.06 -0.54 6.31 -39.56 -0.25 -0.79 16 21 Cl -0.06 -0.50 28.95 -51.86 -1.50 -2.00 16 22 C -0.06 -0.53 9.82 -39.48 -0.39 -0.92 16 23 C -0.15 -1.49 10.01 -39.57 -0.40 -1.89 16 24 C 0.16 2.31 7.24 -38.96 -0.28 2.02 16 25 F -0.11 -1.92 16.12 2.25 0.04 -1.88 16 26 C 0.11 2.24 3.82 -65.77 -0.25 1.99 16 27 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 28 C 0.16 4.21 4.88 -3.39 -0.02 4.19 16 29 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.03 0.50 7.74 -51.93 -0.40 0.10 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 1.34 7.88 -51.93 -0.41 0.93 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.86 6.70 -51.93 -0.35 0.51 16 35 H 0.07 0.67 7.22 -51.93 -0.37 0.29 16 36 H 0.15 1.45 5.42 -52.49 -0.28 1.17 16 37 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.10 2.91 6.22 -51.93 -0.32 2.58 16 40 H 0.02 0.54 7.95 -51.93 -0.41 0.13 16 LS Contribution 342.92 15.07 5.17 5.17 Total: -1.00 -34.42 342.92 -9.70 -44.12 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -4.64 Total: -1.54 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -3.34 Total: 4.76 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.49 Total: -54.45 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.42 -9.70 -44.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076011435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.914 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds