Wall clock time and date at job start Tue Mar 31 2020 20:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99959 * 2 1 4 4 H 1.48496 * 109.47046 * 239.99919 * 3 2 1 5 5 H 1.48496 * 109.47268 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46636 * 120.00206 * 3 2 1 7 7 C 1.38813 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99750 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99834 * 359.97438 * 7 2 1 10 10 C 1.46583 * 125.30323 * 180.02562 * 9 7 2 11 11 C 1.53263 * 108.13799 * 177.89927 * 10 9 7 12 12 H 1.09003 * 112.58459 * 222.74966 * 11 10 9 13 13 C 1.54806 * 109.74812 * 95.75413 * 11 10 9 14 14 C 1.54933 * 101.49969 * 212.29300 * 13 11 10 15 15 N 1.48483 * 105.12300 * 37.07516 * 14 13 11 16 16 C 1.34783 * 126.16242 * 156.74639 * 15 14 13 17 17 O 1.21567 * 119.99962 * 175.90579 * 16 15 14 18 18 C 1.47693 * 119.99833 * 355.90669 * 16 15 14 19 19 C 1.39654 * 120.16476 * 35.70630 * 18 16 15 20 20 C 1.37960 * 119.86764 * 179.97438 * 19 18 16 21 21 Cl 1.73599 * 119.90556 * 180.02562 * 20 19 18 22 22 C 1.38566 * 120.19249 * 359.97438 * 20 19 18 23 23 C 1.38190 * 120.32503 * 359.97438 * 22 20 19 24 24 C 1.38324 * 120.13211 * 359.78103 * 23 22 20 25 25 F 1.35094 * 120.09941 * 180.25304 * 24 23 22 26 26 C 1.47213 * 108.30691 * 336.87900 * 15 14 13 27 27 H 1.08994 * 112.28916 * 235.53154 * 26 15 14 28 28 C 1.46601 * 125.30728 * 0.02562 * 9 7 2 29 29 H 0.96999 * 119.99685 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.73702 * 297.57949 * 10 9 7 31 31 H 1.09001 * 109.74001 * 58.22614 * 10 9 7 32 32 H 1.09004 * 111.01645 * 330.35047 * 13 11 10 33 33 H 1.08998 * 111.01964 * 94.23129 * 13 11 10 34 34 H 1.08999 * 110.35526 * 156.08710 * 14 13 11 35 35 H 1.09001 * 110.35390 * 278.37435 * 14 13 11 36 36 H 1.08001 * 120.06597 * 359.97438 * 19 18 16 37 37 H 1.07995 * 119.83819 * 180.02562 * 22 20 19 38 38 H 1.08000 * 119.93584 * 179.97438 * 23 22 20 39 39 H 1.09000 * 109.91982 * 317.17257 * 28 9 7 40 40 H 1.09007 * 109.91352 * 78.45439 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.9379 -3.7199 -0.0005 11 6 0.8148 -4.7614 0.0529 12 1 1.0331 -5.5775 0.7417 13 6 0.4825 -5.2462 -1.3793 14 6 -1.0353 -5.5346 -1.2634 15 7 -1.5648 -4.4712 -0.3726 16 6 -2.8402 -4.0382 -0.3219 17 8 -3.1683 -3.2096 0.5049 18 6 -3.8390 -4.5706 -1.2707 19 6 -3.7820 -5.9066 -1.6734 20 6 -4.7185 -6.3976 -2.5595 21 17 -4.6490 -8.0583 -3.0603 22 6 -5.7151 -5.5693 -3.0502 23 6 -5.7796 -4.2463 -2.6562 24 6 -4.8506 -3.7413 -1.7645 25 9 -4.9174 -2.4492 -1.3758 26 6 -0.4552 -3.9623 0.4502 27 1 -0.6693 -4.0246 1.5171 28 6 -0.1342 -2.5236 -0.0005 29 1 -0.4849 0.8401 0.0004 30 1 2.5232 -3.8559 -0.9099 31 1 2.5825 -3.8287 0.8717 32 1 0.6769 -4.4630 -2.1121 33 1 1.0354 -6.1533 -1.6231 34 1 -1.5079 -5.4785 -2.2440 35 1 -1.2019 -6.5150 -0.8169 36 1 -3.0064 -6.5541 -1.2919 37 1 -6.4455 -5.9597 -3.7433 38 1 -6.5588 -3.6062 -3.0429 39 1 -0.5735 -1.8095 0.6961 40 1 -0.5229 -2.3537 -1.0047 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076011435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:47 Heat of formation + Delta-G solvation = -34.734302 kcal Electronic energy + Delta-G solvation = -27452.864474 eV Core-core repulsion = 23401.290172 eV Total energy + Delta-G solvation = -4051.574302 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.11640 -41.77142 -40.21485 -39.09549 -37.43000 -36.71307 -34.27609 -32.79701 -32.21474 -31.41030 -30.28284 -28.47637 -26.57073 -25.58785 -23.95164 -23.58238 -22.35629 -21.33423 -20.46049 -19.00120 -18.75816 -18.48246 -17.86257 -17.31372 -17.13396 -16.77520 -16.42337 -16.23221 -15.78070 -15.31371 -15.18182 -15.06651 -14.55459 -14.47513 -14.24554 -14.20126 -13.85229 -13.65721 -13.49336 -13.23570 -13.01548 -12.86087 -12.69555 -12.51361 -12.34932 -12.24077 -12.06665 -11.89650 -11.73422 -11.53501 -11.42920 -11.13458 -10.75664 -10.38015 -9.83990 -9.66337 -8.94362 -7.81552 -5.27322 -0.49773 -0.16704 0.95346 1.40667 1.45657 1.49377 1.52593 1.79960 2.33819 2.46443 2.99249 3.12897 3.29550 3.43288 3.53986 3.61158 3.77583 3.86970 3.94091 3.99701 4.25858 4.28190 4.31265 4.44295 4.48180 4.57060 4.65051 4.74061 4.79596 4.85198 4.89729 4.93852 5.08089 5.14311 5.15751 5.42215 5.44352 5.46540 5.51717 5.76267 6.21192 6.41959 6.97283 7.05537 7.75958 8.36238 9.20621 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015910 B = 0.003570 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.507106 B = 7842.309612 C = 9067.418705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.072 4.072 3 Si 0.983 3.017 4 H -0.272 1.272 5 H -0.300 1.300 6 H -0.272 1.272 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.624 5.624 10 C 0.136 3.864 11 C -0.090 4.090 12 H 0.135 0.865 13 C -0.114 4.114 14 C 0.091 3.909 15 N -0.602 5.602 16 C 0.560 3.440 17 O -0.575 6.575 18 C -0.166 4.166 19 C -0.049 4.049 20 C -0.052 4.052 21 Cl -0.038 7.038 22 C -0.043 4.043 23 C -0.136 4.136 24 C 0.122 3.878 25 F -0.143 7.143 26 C 0.116 3.884 27 H 0.072 0.928 28 C 0.185 3.815 29 H 0.242 0.758 30 H 0.039 0.961 31 H 0.033 0.967 32 H 0.051 0.949 33 H 0.134 0.866 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.170 0.830 37 H 0.187 0.813 38 H 0.179 0.821 39 H 0.036 0.964 40 H -0.025 1.025 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.544 -22.236 -9.334 25.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.265 4.265 3 Si 0.811 3.189 4 H -0.197 1.197 5 H -0.226 1.226 6 H -0.197 1.197 7 C -0.373 4.373 8 H 0.109 0.891 9 N -0.351 5.351 10 C 0.011 3.989 11 C -0.109 4.109 12 H 0.153 0.847 13 C -0.151 4.151 14 C -0.029 4.029 15 N -0.334 5.334 16 C 0.349 3.651 17 O -0.455 6.455 18 C -0.170 4.170 19 C -0.068 4.068 20 C -0.079 4.079 21 Cl -0.009 7.009 22 C -0.061 4.061 23 C -0.155 4.155 24 C 0.101 3.899 25 F -0.122 7.122 26 C 0.012 3.988 27 H 0.090 0.910 28 C 0.059 3.941 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.152 0.848 34 H 0.107 0.893 35 H 0.134 0.866 36 H 0.187 0.813 37 H 0.205 0.795 38 H 0.196 0.804 39 H 0.055 0.945 40 H -0.007 1.007 Dipole moment (debyes) X Y Z Total from point charges -9.797 -21.688 -8.932 25.419 hybrid contribution 0.268 2.103 0.431 2.164 sum -9.528 -19.584 -8.502 23.380 Atomic orbital electron populations 1.70274 1.06683 1.24930 1.58196 1.25815 0.96451 1.01665 1.02532 0.85084 0.76971 0.78289 0.78594 1.19727 1.22614 1.19737 1.19491 0.91233 0.83535 1.43025 0.89122 1.44468 1.01876 1.01763 1.86986 1.21301 0.94865 0.83748 0.99001 1.22935 0.91361 0.97439 0.99141 0.84678 1.22837 0.94566 1.03054 0.94682 1.23179 0.94674 0.90615 0.94423 1.48744 1.06433 1.38581 1.39629 1.18183 0.81925 0.81141 0.83858 1.90840 1.80006 1.34808 1.39814 1.19826 0.98059 0.96262 1.02901 1.21408 0.98651 0.92246 0.94465 1.20857 0.98482 0.88114 1.00414 1.98404 1.98027 1.14589 1.89884 1.21497 0.96490 0.90805 0.97343 1.21396 0.99311 0.97373 0.97384 1.18360 0.96188 0.78458 0.96860 1.91557 1.95676 1.35329 1.89622 1.22673 0.86560 0.95244 0.94353 0.91014 1.21146 0.84303 0.92734 0.95960 0.94878 0.94308 0.94884 0.92974 0.84823 0.89261 0.86624 0.81297 0.79531 0.80407 0.94540 1.00729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.13 10.17 21.65 0.22 -62.91 16 2 C -0.07 -4.38 5.48 84.86 0.47 -3.92 16 3 Si 0.98 48.29 29.55 68.60 2.03 50.31 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 5 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 6 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.24 -14.26 10.25 84.03 0.86 -13.40 16 8 H 0.09 4.92 7.83 -2.91 -0.02 4.90 16 9 N -0.62 -33.58 3.37 -698.77 -2.36 -35.94 16 10 C 0.14 5.32 6.66 86.45 0.58 5.89 16 11 C -0.09 -2.69 3.91 -9.33 -0.04 -2.73 16 12 H 0.14 2.94 8.14 -2.39 -0.02 2.92 16 13 C -0.11 -2.66 6.24 31.87 0.20 -2.46 16 14 C 0.09 2.01 5.15 86.66 0.45 2.46 16 15 N -0.60 -21.23 2.89 -784.54 -2.27 -23.50 16 16 C 0.56 22.52 7.24 86.74 0.63 23.15 16 17 O -0.57 -29.79 16.29 -3.93 -0.06 -29.85 16 18 C -0.17 -4.99 5.56 -20.05 -0.11 -5.10 16 19 C -0.05 -0.96 7.73 22.55 0.17 -0.79 16 20 C -0.05 -0.78 6.31 22.28 0.14 -0.64 16 21 Cl -0.04 -0.45 28.95 -2.72 -0.08 -0.53 16 22 C -0.04 -0.55 9.82 22.34 0.22 -0.33 16 23 C -0.14 -2.46 10.01 22.28 0.22 -2.24 16 24 C 0.12 3.62 7.24 22.67 0.16 3.78 16 25 F -0.14 -5.60 16.12 44.97 0.72 -4.87 16 26 C 0.12 4.76 3.82 46.00 0.18 4.93 16 27 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 28 C 0.19 10.22 4.88 86.75 0.42 10.64 16 29 H 0.24 15.85 8.31 -92.71 -0.77 15.07 16 30 H 0.04 1.44 7.74 -2.39 -0.02 1.42 16 31 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.58 7.88 -2.38 -0.02 1.56 16 33 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.09 1.77 6.70 -2.39 -0.02 1.75 16 35 H 0.12 1.58 7.22 -2.39 -0.02 1.56 16 36 H 0.17 2.59 5.42 -2.91 -0.02 2.58 16 37 H 0.19 0.94 8.06 -2.91 -0.02 0.92 16 38 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.04 2.43 6.22 -2.39 -0.01 2.42 16 40 H -0.03 -1.57 7.95 -2.38 -0.02 -1.59 16 Total: -1.00 -88.27 342.92 3.83 -84.43 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.08 Total: 3.60 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 4.55 Total: 19.26 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -4.41 Total: -122.36 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.06 Total: -29.85 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.72 Total: -4.87 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.31 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.53 kcal Total: -88.27 3.83 -84.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076011435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.699 kcal (2) G-P(sol) polarization free energy of solvation -88.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds