Wall clock time and date at job start Tue Mar 31 2020 20:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00229 * 2 1 4 4 H 1.48496 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.46994 * 300.00488 * 3 2 1 6 6 H 1.48500 * 109.46662 * 60.00263 * 3 2 1 7 7 C 1.38814 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99763 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99829 * 0.02562 * 7 2 1 10 10 C 1.46584 * 125.30289 * 179.97438 * 9 7 2 11 11 C 1.53272 * 108.15899 * 177.88716 * 10 9 7 12 12 H 1.08997 * 112.58602 * 222.77019 * 11 10 9 13 13 C 1.54800 * 110.30936 * 95.99945 * 11 10 9 14 14 C 1.54947 * 101.49733 * 212.07568 * 13 11 10 15 15 N 1.47357 * 105.09963 * 36.73763 * 14 13 11 16 16 C 1.34778 * 125.52939 * 156.51873 * 15 14 13 17 17 O 1.21574 * 119.99865 * 176.87625 * 16 15 14 18 18 C 1.47691 * 119.99879 * 356.86901 * 16 15 14 19 19 C 1.39669 * 120.16090 * 35.83537 * 18 16 15 20 20 C 1.37853 * 119.90056 * 179.80965 * 19 18 16 21 21 C 1.38445 * 120.23378 * 0.44959 * 20 19 18 22 22 C 1.38302 * 120.32268 * 359.78082 * 21 20 19 23 23 Cl 1.73604 * 119.95140 * 179.97438 * 22 21 20 24 24 C 1.38432 * 120.09772 * 0.02562 * 22 21 20 25 25 F 1.35093 * 120.11964 * 179.97438 * 24 22 21 26 26 C 1.47215 * 108.93711 * 337.40587 * 15 14 13 27 27 H 1.09000 * 112.28778 * 235.35695 * 26 15 14 28 28 C 1.47293 * 125.40471 * 0.68837 * 9 7 2 29 29 H 0.97000 * 120.00102 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.73473 * 58.20825 * 10 9 7 31 31 H 1.08997 * 109.73841 * 297.57349 * 10 9 7 32 32 H 1.09001 * 111.01966 * 330.12982 * 13 11 10 33 33 H 1.08996 * 111.01726 * 93.98557 * 13 11 10 34 34 H 1.09007 * 110.35027 * 156.08893 * 14 13 11 35 35 H 1.08997 * 110.35315 * 278.38176 * 14 13 11 36 36 H 1.07999 * 120.04855 * 0.02562 * 19 18 16 37 37 H 1.08000 * 119.88318 * 180.18624 * 20 19 18 38 38 H 1.08004 * 119.83887 * 179.76608 * 21 20 19 39 39 H 1.09005 * 110.83369 * 78.48645 * 28 9 7 40 40 H 1.08991 * 109.32950 * 316.98854 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 1.9379 -3.7198 -0.0028 11 6 0.8151 -4.7619 0.0500 12 1 1.0337 -5.5782 0.7383 13 6 0.4764 -5.2594 -1.3762 14 6 -1.0400 -5.5516 -1.2493 15 7 -1.5617 -4.4953 -0.3643 16 6 -2.8405 -4.0720 -0.3193 17 8 -3.1740 -3.2302 0.4919 18 6 -3.8367 -4.6307 -1.2557 19 6 -3.7708 -5.9745 -1.6307 20 6 -4.7057 -6.4914 -2.5020 21 6 -5.7045 -5.6808 -3.0142 22 6 -5.7757 -4.3477 -2.6530 23 17 -7.0317 -3.3399 -3.3015 24 6 -4.8463 -3.8155 -1.7758 25 9 -4.9152 -2.5133 -1.4231 26 6 -0.4553 -3.9627 0.4477 27 1 -0.6633 -4.0171 1.5163 28 6 -0.1408 -2.5267 -0.0167 29 1 -0.4850 0.8400 0.0004 30 1 2.5828 -3.8292 0.8692 31 1 2.5231 -3.8551 -0.9123 32 1 0.6641 -4.4816 -2.1165 33 1 1.0312 -6.1664 -1.6159 34 1 -1.5182 -5.5050 -2.2278 35 1 -1.2010 -6.5287 -0.7938 36 1 -2.9908 -6.6085 -1.2359 37 1 -4.6564 -7.5313 -2.7895 38 1 -6.4314 -6.0916 -3.6993 39 1 -0.5351 -2.3661 -1.0202 40 1 -0.5783 -1.8083 0.6764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076200152.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:16 Heat of formation + Delta-G solvation = -10.411923 kcal Electronic energy + Delta-G solvation = -27467.299091 eV Core-core repulsion = 23416.779486 eV Total energy + Delta-G solvation = -4050.519604 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.93526 -40.48247 -39.08150 -37.67132 -36.71208 -35.01611 -32.51660 -31.36908 -30.76754 -30.67141 -28.58415 -26.87639 -24.69208 -24.36175 -22.96963 -22.44112 -20.69847 -19.93471 -19.00676 -17.76661 -17.45544 -16.88184 -16.70810 -16.03176 -15.78390 -15.45949 -15.02990 -14.80545 -14.57055 -14.11571 -13.74833 -13.49035 -13.29556 -13.19775 -12.99473 -12.71212 -12.47752 -12.20805 -12.03974 -11.77071 -11.74796 -11.59989 -11.30450 -11.18921 -11.05455 -10.79552 -10.46041 -10.19927 -10.04074 -9.77422 -9.72171 -9.65811 -9.26539 -8.97582 -8.59558 -8.28273 -6.81582 -5.60824 -3.03710 0.45291 0.68523 1.70634 2.72617 3.03533 3.43378 3.43677 3.47699 3.51512 3.82957 4.24739 4.42687 4.51451 4.56483 4.69110 4.78316 4.87724 5.06170 5.20545 5.36513 5.45050 5.51806 5.52802 5.58197 5.62447 5.71205 5.77295 5.83246 5.88027 5.97602 6.17783 6.27247 6.28773 6.49250 6.55035 6.64447 6.85101 7.48692 7.65031 7.79448 7.95123 8.34800 8.42828 9.24606 9.86392 10.48237 11.43650 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013732 B = 0.003736 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.595474 B = 7492.824062 C = 9017.096361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.233 4.233 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.109 4.109 12 H 0.088 0.912 13 C -0.123 4.123 14 C 0.095 3.905 15 N -0.599 5.599 16 C 0.568 3.432 17 O -0.507 6.507 18 C -0.144 4.144 19 C -0.063 4.063 20 C -0.127 4.127 21 C -0.066 4.066 22 C -0.085 4.085 23 Cl -0.045 7.045 24 C 0.165 3.835 25 F -0.102 7.102 26 C 0.115 3.885 27 H 0.086 0.914 28 C 0.163 3.837 29 H 0.253 0.747 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.020 0.980 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.647 -18.847 -7.177 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.361 4.361 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.019 3.981 11 C -0.128 4.128 12 H 0.106 0.894 13 C -0.161 4.161 14 C -0.027 4.027 15 N -0.333 5.333 16 C 0.355 3.645 17 O -0.381 6.381 18 C -0.149 4.149 19 C -0.082 4.082 20 C -0.146 4.146 21 C -0.085 4.085 22 C -0.113 4.113 23 Cl -0.016 7.016 24 C 0.144 3.856 25 F -0.080 7.080 26 C 0.012 3.988 27 H 0.104 0.896 28 C 0.037 3.963 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.166 0.834 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.038 0.962 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.062 -17.967 -6.751 21.671 hybrid contribution 0.260 1.154 -0.188 1.197 sum -9.802 -16.814 -6.939 20.662 Atomic orbital electron populations 1.69909 1.04794 1.24958 1.56410 1.24853 0.95680 0.97794 1.02006 0.86039 0.78594 0.83784 0.77289 1.20496 1.21770 1.21661 1.19063 0.90431 0.82230 1.44365 0.90264 1.44329 1.01424 0.99921 1.87192 1.20971 0.93304 0.85557 0.98278 1.22878 0.95772 0.97945 0.96216 0.89373 1.22811 0.93635 1.01851 0.97789 1.22568 0.95461 0.90512 0.94204 1.48369 1.07163 1.37668 1.40123 1.17435 0.80977 0.82174 0.83892 1.90897 1.78616 1.31042 1.37579 1.20103 0.97695 0.95078 1.02007 1.21614 0.98354 0.93217 0.94977 1.21101 0.94628 1.00624 0.98222 1.21121 0.98508 0.90358 0.98474 1.20908 0.94712 0.93761 1.01888 1.98397 1.50024 1.68471 1.84757 1.17383 0.93923 0.79628 0.94681 1.91663 1.95198 1.31509 1.89610 1.23012 0.83320 0.97706 0.94746 0.89609 1.21808 0.84371 0.90098 0.99994 0.93584 0.95702 0.95745 0.89842 0.90114 0.90640 0.91422 0.83392 0.83772 0.83643 0.96233 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.19 10.16 55.49 0.56 -27.62 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.23 -6.58 10.25 -15.06 -0.15 -6.74 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.54 3.39 -171.65 -0.58 -16.12 16 10 C 0.15 2.90 6.68 -3.86 -0.03 2.88 16 11 C -0.11 -1.73 3.87 -88.33 -0.34 -2.07 16 12 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 13 C -0.12 -1.60 6.26 -24.75 -0.15 -1.76 16 14 C 0.10 1.14 5.12 -2.55 -0.01 1.12 16 15 N -0.60 -10.19 2.88 -162.80 -0.47 -10.66 16 16 C 0.57 10.66 7.24 -12.40 -0.09 10.57 16 17 O -0.51 -11.90 16.33 5.30 0.09 -11.82 16 18 C -0.14 -2.12 5.52 -104.92 -0.58 -2.69 16 19 C -0.06 -0.62 7.93 -39.19 -0.31 -0.93 16 20 C -0.13 -0.93 10.03 -39.65 -0.40 -1.33 16 21 C -0.07 -0.55 9.82 -39.48 -0.39 -0.94 16 22 C -0.08 -1.02 6.32 -39.49 -0.25 -1.27 16 23 Cl -0.05 -0.53 28.61 -51.86 -1.48 -2.01 16 24 C 0.17 2.54 7.22 -38.93 -0.28 2.26 16 25 F -0.10 -1.93 15.71 2.25 0.04 -1.90 16 26 C 0.12 2.26 3.82 -65.73 -0.25 2.01 16 27 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 28 C 0.16 4.15 4.98 -3.00 -0.01 4.14 16 29 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.48 7.77 -51.93 -0.40 0.07 16 32 H 0.08 1.30 7.92 -51.93 -0.41 0.89 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.80 6.69 -51.93 -0.35 0.45 16 35 H 0.07 0.59 7.15 -51.93 -0.37 0.22 16 36 H 0.15 1.12 5.42 -52.49 -0.28 0.84 16 37 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.02 0.56 7.96 -51.93 -0.41 0.14 16 40 H 0.10 2.98 6.18 -51.93 -0.32 2.66 16 LS Contribution 342.38 15.07 5.16 5.16 Total: -1.00 -35.35 342.38 -9.69 -45.05 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.63 Total: -2.69 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -3.35 Total: 4.97 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.49 Total: -54.41 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.48 Total: -2.01 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.35 -9.69 -45.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076200152.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.637 kcal (2) G-P(sol) polarization free energy of solvation -35.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds