Wall clock time and date at job start Tue Mar 31 2020 20:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00229 * 2 1 4 4 H 1.48496 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.46994 * 300.00488 * 3 2 1 6 6 H 1.48500 * 109.46662 * 60.00263 * 3 2 1 7 7 C 1.38814 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99763 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99829 * 0.02562 * 7 2 1 10 10 C 1.46584 * 125.30289 * 179.97438 * 9 7 2 11 11 C 1.53272 * 108.15899 * 177.88716 * 10 9 7 12 12 H 1.08997 * 112.58602 * 222.77019 * 11 10 9 13 13 C 1.54800 * 110.30936 * 95.99945 * 11 10 9 14 14 C 1.54947 * 101.49733 * 212.07568 * 13 11 10 15 15 N 1.47357 * 105.09963 * 36.73763 * 14 13 11 16 16 C 1.34778 * 125.52939 * 156.51873 * 15 14 13 17 17 O 1.21574 * 119.99865 * 176.87625 * 16 15 14 18 18 C 1.47691 * 119.99879 * 356.86901 * 16 15 14 19 19 C 1.39669 * 120.16090 * 35.83537 * 18 16 15 20 20 C 1.37853 * 119.90056 * 179.80965 * 19 18 16 21 21 C 1.38445 * 120.23378 * 0.44959 * 20 19 18 22 22 C 1.38302 * 120.32268 * 359.78082 * 21 20 19 23 23 Cl 1.73604 * 119.95140 * 179.97438 * 22 21 20 24 24 C 1.38432 * 120.09772 * 0.02562 * 22 21 20 25 25 F 1.35093 * 120.11964 * 179.97438 * 24 22 21 26 26 C 1.47215 * 108.93711 * 337.40587 * 15 14 13 27 27 H 1.09000 * 112.28778 * 235.35695 * 26 15 14 28 28 C 1.47293 * 125.40471 * 0.68837 * 9 7 2 29 29 H 0.97000 * 120.00102 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.73473 * 58.20825 * 10 9 7 31 31 H 1.08997 * 109.73841 * 297.57349 * 10 9 7 32 32 H 1.09001 * 111.01966 * 330.12982 * 13 11 10 33 33 H 1.08996 * 111.01726 * 93.98557 * 13 11 10 34 34 H 1.09007 * 110.35027 * 156.08893 * 14 13 11 35 35 H 1.08997 * 110.35315 * 278.38176 * 14 13 11 36 36 H 1.07999 * 120.04855 * 0.02562 * 19 18 16 37 37 H 1.08000 * 119.88318 * 180.18624 * 20 19 18 38 38 H 1.08004 * 119.83887 * 179.76608 * 21 20 19 39 39 H 1.09005 * 110.83369 * 78.48645 * 28 9 7 40 40 H 1.08991 * 109.32950 * 316.98854 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 1.9379 -3.7198 -0.0028 11 6 0.8151 -4.7619 0.0500 12 1 1.0337 -5.5782 0.7383 13 6 0.4764 -5.2594 -1.3762 14 6 -1.0400 -5.5516 -1.2493 15 7 -1.5617 -4.4953 -0.3643 16 6 -2.8405 -4.0720 -0.3193 17 8 -3.1740 -3.2302 0.4919 18 6 -3.8367 -4.6307 -1.2557 19 6 -3.7708 -5.9745 -1.6307 20 6 -4.7057 -6.4914 -2.5020 21 6 -5.7045 -5.6808 -3.0142 22 6 -5.7757 -4.3477 -2.6530 23 17 -7.0317 -3.3399 -3.3015 24 6 -4.8463 -3.8155 -1.7758 25 9 -4.9152 -2.5133 -1.4231 26 6 -0.4553 -3.9627 0.4477 27 1 -0.6633 -4.0171 1.5163 28 6 -0.1408 -2.5267 -0.0167 29 1 -0.4850 0.8400 0.0004 30 1 2.5828 -3.8292 0.8692 31 1 2.5231 -3.8551 -0.9123 32 1 0.6641 -4.4816 -2.1165 33 1 1.0312 -6.1664 -1.6159 34 1 -1.5182 -5.5050 -2.2278 35 1 -1.2010 -6.5287 -0.7938 36 1 -2.9908 -6.6085 -1.2359 37 1 -4.6564 -7.5313 -2.7895 38 1 -6.4314 -6.0916 -3.6993 39 1 -0.5351 -2.3661 -1.0202 40 1 -0.5783 -1.8083 0.6764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076200152.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:16 Heat of formation + Delta-G solvation = -34.704929 kcal Electronic energy + Delta-G solvation = -27468.352515 eV Core-core repulsion = 23416.779486 eV Total energy + Delta-G solvation = -4051.573028 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.15547 -41.77864 -40.15773 -39.06354 -37.62759 -36.71747 -34.25717 -32.62309 -32.11112 -31.59779 -30.26751 -28.45089 -26.57532 -25.53788 -23.89958 -23.54821 -22.38188 -21.30854 -20.44340 -19.00311 -18.82121 -18.43874 -17.86010 -17.34393 -17.06847 -16.84531 -16.37721 -16.09854 -15.77526 -15.60899 -15.15780 -15.07720 -14.45983 -14.42861 -14.19740 -14.09231 -13.82150 -13.53855 -13.37797 -13.22400 -13.01704 -12.89128 -12.74551 -12.63793 -12.48175 -12.19170 -12.11651 -11.90080 -11.70318 -11.48943 -11.41846 -11.11184 -10.80060 -10.18620 -9.87369 -9.68408 -8.95765 -7.82849 -5.28746 -0.43288 -0.16636 0.82254 1.39773 1.42459 1.53236 1.53853 1.85974 2.41355 2.45229 2.90378 3.16999 3.28897 3.50175 3.57592 3.75060 3.76323 3.82157 3.99864 4.06573 4.28335 4.30230 4.38742 4.47935 4.51565 4.67367 4.71710 4.75197 4.82825 4.94409 5.00534 5.08748 5.10996 5.18088 5.18367 5.43442 5.47633 5.50550 5.57369 5.75668 6.20262 6.45371 6.98919 7.04729 7.74177 8.35161 9.19709 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013732 B = 0.003736 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.595474 B = 7492.824062 C = 9017.096361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.074 4.074 3 Si 0.982 3.018 4 H -0.255 1.255 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.239 4.239 8 H 0.092 0.908 9 N -0.625 5.625 10 C 0.135 3.865 11 C -0.090 4.090 12 H 0.136 0.864 13 C -0.115 4.115 14 C 0.089 3.911 15 N -0.599 5.599 16 C 0.557 3.443 17 O -0.579 6.579 18 C -0.168 4.168 19 C -0.050 4.050 20 C -0.097 4.097 21 C -0.049 4.049 22 C -0.092 4.092 23 Cl -0.052 7.052 24 C 0.116 3.884 25 F -0.143 7.143 26 C 0.118 3.882 27 H 0.071 0.929 28 C 0.182 3.818 29 H 0.241 0.759 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.135 0.865 34 H 0.093 0.907 35 H 0.123 0.877 36 H 0.180 0.820 37 H 0.203 0.797 38 H 0.185 0.815 39 H -0.026 1.026 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.515 -24.614 -9.086 27.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.266 4.266 3 Si 0.810 3.190 4 H -0.178 1.178 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.368 4.368 8 H 0.110 0.890 9 N -0.352 5.352 10 C 0.010 3.990 11 C -0.109 4.109 12 H 0.154 0.846 13 C -0.153 4.153 14 C -0.031 4.031 15 N -0.331 5.331 16 C 0.346 3.654 17 O -0.459 6.459 18 C -0.172 4.172 19 C -0.068 4.068 20 C -0.114 4.114 21 C -0.068 4.068 22 C -0.119 4.119 23 Cl -0.023 7.023 24 C 0.095 3.905 25 F -0.121 7.121 26 C 0.014 3.986 27 H 0.089 0.911 28 C 0.055 3.945 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.153 0.847 34 H 0.112 0.888 35 H 0.141 0.859 36 H 0.197 0.803 37 H 0.220 0.780 38 H 0.202 0.798 39 H -0.008 1.008 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.872 -23.819 -8.697 26.864 hybrid contribution -0.077 2.848 0.358 2.871 sum -8.949 -20.970 -8.339 24.277 Atomic orbital electron populations 1.70280 1.06773 1.24754 1.58529 1.25813 0.96411 1.01704 1.02716 0.84954 0.78528 0.79048 0.76503 1.17830 1.22238 1.22171 1.19574 0.91248 0.83507 1.42459 0.88979 1.44659 1.01809 1.01805 1.86917 1.21297 0.94938 0.83760 0.98982 1.22944 0.91194 0.97321 0.99416 0.84616 1.22854 0.95026 1.02943 0.94478 1.23061 0.94432 0.90881 0.94710 1.48469 1.06039 1.38317 1.40256 1.18276 0.82152 0.81265 0.83685 1.90843 1.80119 1.34327 1.40653 1.19935 0.97105 0.97366 1.02824 1.22012 0.99557 0.90692 0.94502 1.21748 0.91878 1.02637 0.95143 1.21719 0.99070 0.88343 0.97629 1.21127 0.94020 0.95180 1.01619 1.98391 1.50048 1.69268 1.84638 1.17968 0.96390 0.78651 0.97525 1.91548 1.95683 1.34380 1.90493 1.22658 0.86602 0.94911 0.94469 0.91064 1.21276 0.84260 0.93076 0.95841 0.94942 0.94779 0.94429 0.93343 0.84659 0.88836 0.85925 0.80254 0.78020 0.79787 1.00799 0.94522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -64.06 10.16 21.65 0.22 -63.84 16 2 C -0.07 -4.54 5.49 84.86 0.47 -4.08 16 3 Si 0.98 48.73 29.55 68.60 2.03 50.75 16 4 H -0.25 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 6 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 7 C -0.24 -13.99 10.25 84.03 0.86 -13.13 16 8 H 0.09 5.02 7.83 -2.91 -0.02 4.99 16 9 N -0.63 -33.61 3.39 -696.99 -2.36 -35.98 16 10 C 0.13 5.23 6.68 86.45 0.58 5.81 16 11 C -0.09 -2.60 3.87 -9.31 -0.04 -2.64 16 12 H 0.14 2.78 8.14 -2.39 -0.02 2.76 16 13 C -0.12 -2.51 6.26 31.87 0.20 -2.31 16 14 C 0.09 1.74 5.12 86.88 0.44 2.18 16 15 N -0.60 -20.38 2.88 -787.25 -2.27 -22.65 16 16 C 0.56 22.17 7.24 86.74 0.63 22.80 16 17 O -0.58 -30.41 16.33 -3.95 -0.06 -30.48 16 18 C -0.17 -4.94 5.52 -20.06 -0.11 -5.05 16 19 C -0.05 -0.75 7.93 22.52 0.18 -0.57 16 20 C -0.10 -0.78 10.03 22.23 0.22 -0.56 16 21 C -0.05 -0.60 9.82 22.33 0.22 -0.38 16 22 C -0.09 -2.13 6.32 22.33 0.14 -1.99 16 23 Cl -0.05 -1.23 28.61 -2.72 -0.08 -1.31 16 24 C 0.12 3.76 7.22 22.69 0.16 3.92 16 25 F -0.14 -6.12 15.71 44.97 0.71 -5.41 16 26 C 0.12 4.77 3.82 46.03 0.18 4.94 16 27 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 28 C 0.18 10.06 4.98 86.62 0.43 10.49 16 29 H 0.24 15.96 8.31 -92.71 -0.77 15.19 16 30 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.04 1.38 7.77 -2.39 -0.02 1.36 16 32 H 0.05 1.42 7.92 -2.39 -0.02 1.40 16 33 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.54 6.69 -2.38 -0.02 1.53 16 35 H 0.12 1.18 7.15 -2.39 -0.02 1.16 16 36 H 0.18 1.49 5.42 -2.91 -0.02 1.48 16 37 H 0.20 -0.46 8.06 -2.91 -0.02 -0.49 16 38 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 39 H -0.03 -1.62 7.96 -2.38 -0.02 -1.64 16 40 H 0.04 2.47 6.18 -2.39 -0.01 2.45 16 Total: -1.00 -95.15 342.38 3.82 -91.32 By element: Atomic # 1 Polarization: -2.95 SS G_CDS: 1.08 Total: -1.87 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: 4.56 Total: 19.46 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -4.41 Total: -122.47 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.06 Total: -30.48 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.71 Total: -5.41 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 2.03 Total: 50.75 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -95.15 3.82 -91.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076200152.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.619 kcal (2) G-P(sol) polarization free energy of solvation -95.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds