Wall clock time and date at job start Tue Mar 31 2020 20:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 119.99727 * 2 1 4 4 H 1.48504 * 109.47120 * 274.95871 * 3 2 1 5 5 H 1.48497 * 109.47362 * 34.95936 * 3 2 1 6 6 H 1.48503 * 109.47065 * 154.96301 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99591 * 177.58279 * 7 2 1 9 9 N 1.36933 * 119.99862 * 357.58710 * 7 2 1 10 10 C 1.46589 * 125.30285 * 165.40832 * 9 7 2 11 11 C 1.53266 * 108.13802 * 177.89731 * 10 9 7 12 12 H 1.08996 * 112.58537 * 222.75072 * 11 10 9 13 13 C 1.54807 * 109.74679 * 95.75568 * 11 10 9 14 14 C 1.54931 * 101.49803 * 212.29231 * 13 11 10 15 15 N 1.48484 * 105.12689 * 37.07850 * 14 13 11 16 16 C 1.34774 * 126.16691 * 156.74429 * 15 14 13 17 17 O 1.21559 * 120.00042 * 175.76687 * 16 15 14 18 18 C 1.47777 * 120.00082 * 355.76231 * 16 15 14 19 19 C 1.39608 * 120.14043 * 38.33654 * 18 16 15 20 20 C 1.38129 * 119.83535 * 179.97438 * 19 18 16 21 21 F 1.35101 * 119.93337 * 180.02562 * 20 19 18 22 22 C 1.38619 * 120.12806 * 359.97438 * 20 19 18 23 23 C 1.38235 * 120.29520 * 359.97438 * 22 20 19 24 24 C 1.38156 * 120.15720 * 359.76835 * 23 22 20 25 25 Cl 1.73606 * 120.06446 * 180.25635 * 24 23 22 26 26 C 1.47212 * 108.30198 * 336.87851 * 15 14 13 27 27 H 1.09003 * 112.28790 * 235.52955 * 26 15 14 28 28 C 1.46608 * 125.31080 * 345.41100 * 9 7 2 29 29 H 0.96997 * 120.00350 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.73938 * 297.57506 * 10 9 7 31 31 H 1.08999 * 109.73225 * 58.22842 * 10 9 7 32 32 H 1.09006 * 111.01699 * 330.34373 * 13 11 10 33 33 H 1.09004 * 111.01898 * 94.23527 * 13 11 10 34 34 H 1.09004 * 110.35694 * 156.08666 * 14 13 11 35 35 H 1.09000 * 110.35877 * 278.37944 * 14 13 11 36 36 H 1.07997 * 120.08449 * 0.02895 * 19 18 16 37 37 H 1.08006 * 119.85203 * 180.02562 * 22 20 19 38 38 H 1.08001 * 119.92102 * 180.02562 * 23 22 20 39 39 H 1.09001 * 109.91167 * 317.17450 * 28 9 7 40 40 H 1.08996 * 109.91273 * 78.45085 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3929 2.1070 -1.3949 5 1 1.5040 2.6202 0.8022 6 1 3.5963 1.4123 0.5925 7 6 2.0103 -1.2022 0.0005 8 1 3.0896 -1.2025 -0.0389 9 7 1.3266 -2.3875 0.0510 10 6 1.8947 -3.7064 -0.2430 11 6 0.8031 -4.7578 -0.0149 12 1 1.1740 -5.6398 0.5072 13 6 0.1101 -5.0922 -1.3582 14 6 -1.3338 -5.4048 -0.8914 15 7 -1.6010 -4.4457 0.2102 16 6 -2.8138 -4.0319 0.6278 17 8 -2.9069 -3.2998 1.5937 18 6 -4.0304 -4.4680 -0.0887 19 6 -4.1234 -5.7699 -0.5842 20 6 -5.2637 -6.1710 -1.2525 21 9 -5.3560 -7.4306 -1.7324 22 6 -6.3140 -5.2841 -1.4308 23 6 -6.2281 -3.9941 -0.9415 24 6 -5.0953 -3.5818 -0.2666 25 17 -4.9927 -1.9633 0.3528 26 6 -0.3101 -4.0163 0.7727 27 1 -0.2480 -4.1924 1.8466 28 6 -0.0878 -2.5353 0.4074 29 1 -0.4850 0.8400 -0.0004 30 1 2.2279 -3.7408 -1.2803 31 1 2.7372 -3.9005 0.4208 32 1 0.1265 -4.2345 -2.0307 33 1 0.5667 -5.9637 -1.8274 34 1 -2.0384 -5.2500 -1.7085 35 1 -1.3996 -6.4280 -0.5216 36 1 -3.3061 -6.4619 -0.4447 37 1 -7.2038 -5.6026 -1.9537 38 1 -7.0502 -3.3083 -1.0834 39 1 -0.3232 -1.9024 1.2631 40 1 -0.7150 -2.2642 -0.4418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076282035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:03 Heat of formation + Delta-G solvation = -12.454131 kcal Electronic energy + Delta-G solvation = -27476.779585 eV Core-core repulsion = 23426.171424 eV Total energy + Delta-G solvation = -4050.608161 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.21808 -40.48706 -39.06763 -37.50009 -36.34406 -34.95561 -32.54731 -31.51844 -30.73302 -30.44848 -28.55354 -26.90611 -24.67813 -24.36135 -22.95388 -22.42182 -20.67341 -19.95324 -19.01715 -17.79239 -17.10176 -16.88869 -16.76206 -16.13926 -15.98924 -15.59896 -15.11324 -14.60090 -14.43659 -14.12737 -13.77843 -13.69309 -13.35313 -13.23889 -12.91512 -12.68822 -12.47556 -12.18135 -12.00572 -11.79187 -11.62895 -11.30409 -11.21700 -10.96246 -10.86908 -10.80387 -10.44520 -10.21014 -10.00931 -9.87640 -9.72818 -9.60294 -9.42952 -8.78753 -8.56892 -8.24040 -6.73494 -5.69072 -3.07350 0.47159 0.70458 2.10386 2.73443 3.02954 3.41817 3.41935 3.47075 3.49748 3.85473 4.23000 4.37869 4.51589 4.59700 4.75242 4.84252 4.90723 5.13027 5.21551 5.34790 5.42131 5.49339 5.56452 5.57570 5.64122 5.67404 5.76561 5.79843 5.91568 5.99980 6.17862 6.31210 6.31712 6.49884 6.55303 6.67433 6.87625 7.48342 7.68346 7.83518 7.87783 8.31334 8.41661 9.24069 9.85199 10.50611 11.41870 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.014148 B = 0.004054 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.668428 B = 6904.881932 C = 8333.411651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.001 4.001 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.238 4.238 8 H 0.076 0.924 9 N -0.599 5.599 10 C 0.144 3.856 11 C -0.107 4.107 12 H 0.089 0.911 13 C -0.122 4.122 14 C 0.096 3.904 15 N -0.600 5.600 16 C 0.569 3.431 17 O -0.501 6.501 18 C -0.082 4.082 19 C -0.119 4.119 20 C 0.094 3.906 21 F -0.134 7.134 22 C -0.126 4.126 23 C -0.090 4.090 24 C -0.004 4.004 25 Cl -0.021 7.021 26 C 0.113 3.887 27 H 0.084 0.916 28 C 0.179 3.821 29 H 0.253 0.747 30 H 0.027 0.973 31 H 0.023 0.977 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.152 0.848 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.060 0.940 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.583 -15.062 -4.269 19.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.198 4.198 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.366 4.366 8 H 0.094 0.906 9 N -0.326 5.326 10 C 0.018 3.982 11 C -0.127 4.127 12 H 0.107 0.893 13 C -0.160 4.160 14 C -0.026 4.026 15 N -0.335 5.335 16 C 0.355 3.645 17 O -0.375 6.375 18 C -0.086 4.086 19 C -0.138 4.138 20 C 0.075 3.925 21 F -0.112 7.112 22 C -0.145 4.145 23 C -0.108 4.108 24 C -0.032 4.032 25 Cl 0.009 6.991 26 C 0.009 3.991 27 H 0.102 0.898 28 C 0.053 3.947 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.169 0.831 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.078 0.922 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -11.757 -14.293 -3.656 18.864 hybrid contribution 0.354 0.711 -0.189 0.816 sum -11.403 -13.582 -3.845 18.146 Atomic orbital electron populations 1.69973 1.04882 1.25224 1.55438 1.24939 0.95623 0.97831 1.01444 0.86153 0.78758 0.83672 0.77461 1.21578 1.21652 1.20534 1.18960 0.90248 0.82208 1.45223 0.90645 1.44092 1.07535 1.01097 1.79906 1.21013 0.93684 0.85730 0.97774 1.22849 0.95925 0.98452 0.95449 0.89323 1.22806 0.93241 1.02460 0.97488 1.22724 0.98104 0.92178 0.89619 1.48632 1.05296 1.44595 1.34938 1.17444 0.81598 0.81086 0.84362 1.90883 1.85468 1.34927 1.26227 1.19737 0.95287 0.93402 1.00166 1.21451 0.98165 0.96127 0.98095 1.17515 0.95547 0.80338 0.99107 1.91531 1.96475 1.37163 1.86065 1.21224 0.98838 0.93024 1.01408 1.20914 0.97026 0.95921 0.96970 1.21091 0.94568 0.88935 0.98610 1.98468 1.98016 1.17463 1.85173 1.22944 0.80049 0.98959 0.97107 0.89775 1.21314 0.85658 0.87982 0.99722 0.93632 0.95520 0.95908 0.89636 0.90128 0.90756 0.91433 0.83086 0.83511 0.83286 0.92155 0.94268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.55 10.56 55.49 0.59 -26.97 16 2 C 0.00 -0.02 5.46 -17.43 -0.10 -0.11 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.24 -6.70 10.21 -15.06 -0.15 -6.85 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -15.37 3.37 -172.21 -0.58 -15.95 16 10 C 0.14 2.89 6.66 -3.86 -0.03 2.86 16 11 C -0.11 -1.72 3.91 -88.35 -0.35 -2.07 16 12 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 13 C -0.12 -1.66 6.24 -24.76 -0.15 -1.81 16 14 C 0.10 1.22 5.21 -1.93 -0.01 1.21 16 15 N -0.60 -10.22 2.89 -161.91 -0.47 -10.69 16 16 C 0.57 10.35 7.02 -12.36 -0.09 10.26 16 17 O -0.50 -10.98 15.40 5.31 0.08 -10.90 16 18 C -0.08 -1.19 5.49 -104.95 -0.58 -1.77 16 19 C -0.12 -1.36 7.96 -39.11 -0.31 -1.67 16 20 C 0.09 0.96 7.29 -39.48 -0.29 0.67 16 21 F -0.13 -1.34 17.26 2.25 0.04 -1.31 16 22 C -0.13 -1.11 10.02 -39.44 -0.40 -1.50 16 23 C -0.09 -0.90 9.81 -39.61 -0.39 -1.29 16 24 C 0.00 -0.05 6.33 -39.07 -0.25 -0.30 16 25 Cl -0.02 -0.34 26.75 -51.86 -1.39 -1.73 16 26 C 0.11 2.18 3.82 -65.77 -0.25 1.93 16 27 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 28 C 0.18 4.49 4.60 -3.39 -0.02 4.47 16 29 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.03 0.53 7.74 -51.93 -0.40 0.13 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 1.39 7.88 -51.93 -0.41 0.98 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.87 6.81 -51.93 -0.35 0.52 16 35 H 0.07 0.67 7.24 -51.93 -0.38 0.29 16 36 H 0.15 1.49 5.68 -52.49 -0.30 1.19 16 37 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.06 1.77 7.34 -51.93 -0.38 1.39 16 40 H 0.04 1.10 7.51 -51.93 -0.39 0.71 16 LS Contribution 342.17 15.07 5.16 5.16 Total: -1.00 -33.54 342.17 -9.63 -43.17 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -4.69 Total: -2.23 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -3.34 Total: 4.03 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.46 Total: -53.61 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.90 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.39 Total: -1.73 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.54 -9.63 -43.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076282035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.721 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds