Wall clock time and date at job start Tue Mar 31 2020 20:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 119.99727 * 2 1 4 4 H 1.48504 * 109.47120 * 274.95871 * 3 2 1 5 5 H 1.48497 * 109.47362 * 34.95936 * 3 2 1 6 6 H 1.48503 * 109.47065 * 154.96301 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99591 * 177.58279 * 7 2 1 9 9 N 1.36933 * 119.99862 * 357.58710 * 7 2 1 10 10 C 1.46589 * 125.30285 * 165.40832 * 9 7 2 11 11 C 1.53266 * 108.13802 * 177.89731 * 10 9 7 12 12 H 1.08996 * 112.58537 * 222.75072 * 11 10 9 13 13 C 1.54807 * 109.74679 * 95.75568 * 11 10 9 14 14 C 1.54931 * 101.49803 * 212.29231 * 13 11 10 15 15 N 1.48484 * 105.12689 * 37.07850 * 14 13 11 16 16 C 1.34774 * 126.16691 * 156.74429 * 15 14 13 17 17 O 1.21559 * 120.00042 * 175.76687 * 16 15 14 18 18 C 1.47777 * 120.00082 * 355.76231 * 16 15 14 19 19 C 1.39608 * 120.14043 * 38.33654 * 18 16 15 20 20 C 1.38129 * 119.83535 * 179.97438 * 19 18 16 21 21 F 1.35101 * 119.93337 * 180.02562 * 20 19 18 22 22 C 1.38619 * 120.12806 * 359.97438 * 20 19 18 23 23 C 1.38235 * 120.29520 * 359.97438 * 22 20 19 24 24 C 1.38156 * 120.15720 * 359.76835 * 23 22 20 25 25 Cl 1.73606 * 120.06446 * 180.25635 * 24 23 22 26 26 C 1.47212 * 108.30198 * 336.87851 * 15 14 13 27 27 H 1.09003 * 112.28790 * 235.52955 * 26 15 14 28 28 C 1.46608 * 125.31080 * 345.41100 * 9 7 2 29 29 H 0.96997 * 120.00350 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.73938 * 297.57506 * 10 9 7 31 31 H 1.08999 * 109.73225 * 58.22842 * 10 9 7 32 32 H 1.09006 * 111.01699 * 330.34373 * 13 11 10 33 33 H 1.09004 * 111.01898 * 94.23527 * 13 11 10 34 34 H 1.09004 * 110.35694 * 156.08666 * 14 13 11 35 35 H 1.09000 * 110.35877 * 278.37944 * 14 13 11 36 36 H 1.07997 * 120.08449 * 0.02895 * 19 18 16 37 37 H 1.08006 * 119.85203 * 180.02562 * 22 20 19 38 38 H 1.08001 * 119.92102 * 180.02562 * 23 22 20 39 39 H 1.09001 * 109.91167 * 317.17450 * 28 9 7 40 40 H 1.08996 * 109.91273 * 78.45085 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3929 2.1070 -1.3949 5 1 1.5040 2.6202 0.8022 6 1 3.5963 1.4123 0.5925 7 6 2.0103 -1.2022 0.0005 8 1 3.0896 -1.2025 -0.0389 9 7 1.3266 -2.3875 0.0510 10 6 1.8947 -3.7064 -0.2430 11 6 0.8031 -4.7578 -0.0149 12 1 1.1740 -5.6398 0.5072 13 6 0.1101 -5.0922 -1.3582 14 6 -1.3338 -5.4048 -0.8914 15 7 -1.6010 -4.4457 0.2102 16 6 -2.8138 -4.0319 0.6278 17 8 -2.9069 -3.2998 1.5937 18 6 -4.0304 -4.4680 -0.0887 19 6 -4.1234 -5.7699 -0.5842 20 6 -5.2637 -6.1710 -1.2525 21 9 -5.3560 -7.4306 -1.7324 22 6 -6.3140 -5.2841 -1.4308 23 6 -6.2281 -3.9941 -0.9415 24 6 -5.0953 -3.5818 -0.2666 25 17 -4.9927 -1.9633 0.3528 26 6 -0.3101 -4.0163 0.7727 27 1 -0.2480 -4.1924 1.8466 28 6 -0.0878 -2.5353 0.4074 29 1 -0.4850 0.8400 -0.0004 30 1 2.2279 -3.7408 -1.2803 31 1 2.7372 -3.9005 0.4208 32 1 0.1265 -4.2345 -2.0307 33 1 0.5667 -5.9637 -1.8274 34 1 -2.0384 -5.2500 -1.7085 35 1 -1.3996 -6.4280 -0.5216 36 1 -3.3061 -6.4619 -0.4447 37 1 -7.2038 -5.6026 -1.9537 38 1 -7.0502 -3.3083 -1.0834 39 1 -0.3232 -1.9024 1.2631 40 1 -0.7150 -2.2642 -0.4418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076282035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:02 Heat of formation + Delta-G solvation = -33.713481 kcal Electronic energy + Delta-G solvation = -27477.701459 eV Core-core repulsion = 23426.171424 eV Total energy + Delta-G solvation = -4051.530036 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.00267 -41.77347 -40.24612 -38.86273 -37.47192 -36.63938 -34.23047 -32.76915 -32.20585 -31.35968 -30.24617 -28.47619 -26.53366 -25.56393 -23.91377 -23.55600 -22.35360 -21.31563 -20.43805 -19.02741 -18.75546 -18.05174 -17.74141 -17.28686 -17.19314 -16.70416 -16.46695 -16.33580 -15.79714 -15.21150 -15.17406 -14.98838 -14.72047 -14.38133 -14.20702 -14.04205 -13.75049 -13.63069 -13.48619 -13.32352 -12.89269 -12.86029 -12.75418 -12.50409 -12.35005 -12.16387 -12.07172 -11.89915 -11.70883 -11.52092 -11.48694 -10.96135 -10.72915 -10.34876 -9.78344 -9.62767 -8.85409 -7.88796 -5.29674 -0.47156 -0.14969 1.04908 1.40956 1.43699 1.53221 1.55206 1.83650 2.35806 2.46426 2.94585 3.24948 3.30205 3.44816 3.56378 3.63551 3.79528 3.86438 3.98084 4.01514 4.23211 4.28000 4.34023 4.46266 4.51501 4.57395 4.66886 4.74994 4.80605 4.84833 4.91257 4.97307 5.10156 5.16077 5.19633 5.40902 5.49027 5.52415 5.54805 5.74368 6.18567 6.47082 7.02379 7.08272 7.75907 8.39213 9.20685 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.014148 B = 0.004054 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.668428 B = 6904.881932 C = 8333.411651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.064 4.064 3 Si 0.978 3.022 4 H -0.283 1.283 5 H -0.299 1.299 6 H -0.262 1.262 7 C -0.248 4.248 8 H 0.085 0.915 9 N -0.623 5.623 10 C 0.136 3.864 11 C -0.089 4.089 12 H 0.135 0.865 13 C -0.115 4.115 14 C 0.094 3.906 15 N -0.603 5.603 16 C 0.560 3.440 17 O -0.556 6.556 18 C -0.105 4.105 19 C -0.110 4.110 20 C 0.101 3.899 21 F -0.127 7.127 22 C -0.103 4.103 23 C -0.081 4.081 24 C -0.025 4.025 25 Cl -0.061 7.061 26 C 0.117 3.883 27 H 0.075 0.925 28 C 0.202 3.798 29 H 0.243 0.757 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.050 0.950 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.170 0.830 37 H 0.188 0.812 38 H 0.175 0.825 39 H -0.003 1.003 40 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.753 -18.933 -6.227 23.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.257 4.257 3 Si 0.805 3.195 4 H -0.209 1.209 5 H -0.226 1.226 6 H -0.187 1.187 7 C -0.377 4.377 8 H 0.103 0.897 9 N -0.350 5.350 10 C 0.011 3.989 11 C -0.108 4.108 12 H 0.153 0.847 13 C -0.152 4.152 14 C -0.027 4.027 15 N -0.336 5.336 16 C 0.348 3.652 17 O -0.435 6.435 18 C -0.109 4.109 19 C -0.129 4.129 20 C 0.082 3.918 21 F -0.105 7.105 22 C -0.122 4.122 23 C -0.099 4.099 24 C -0.053 4.053 25 Cl -0.032 7.032 26 C 0.013 3.987 27 H 0.093 0.907 28 C 0.076 3.924 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.149 0.851 34 H 0.104 0.896 35 H 0.131 0.869 36 H 0.187 0.813 37 H 0.205 0.795 38 H 0.193 0.807 39 H 0.015 0.985 40 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -11.889 -18.235 -5.656 22.491 hybrid contribution 0.390 1.820 0.371 1.898 sum -11.499 -16.415 -5.284 20.727 Atomic orbital electron populations 1.70251 1.06674 1.25163 1.57295 1.25837 0.96390 1.01540 1.01968 0.85080 0.77953 0.78987 0.77443 1.20920 1.22598 1.18658 1.19434 0.90974 0.83563 1.43774 0.89694 1.44415 1.07776 1.02728 1.80042 1.21296 0.95268 0.84110 0.98249 1.22914 0.92990 0.98163 0.96744 0.84678 1.22824 0.93772 1.03103 0.95533 1.23096 0.97748 0.93105 0.88742 1.48742 1.04106 1.45015 1.35756 1.18141 0.82945 0.80165 0.83926 1.90841 1.86485 1.37387 1.28771 1.19475 0.94016 0.95199 1.02259 1.21503 0.99385 0.94678 0.97352 1.17525 0.95278 0.80652 0.98370 1.91561 1.96389 1.36752 1.85829 1.21643 0.99509 0.91589 0.99423 1.21201 0.96142 0.97054 0.95534 1.21373 0.96219 0.87320 1.00415 1.98452 1.98204 1.20554 1.86018 1.22635 0.83050 0.95518 0.97523 0.90690 1.20810 0.85107 0.91146 0.95355 0.94752 0.94699 0.94828 0.93149 0.85130 0.89601 0.86851 0.81277 0.79492 0.80727 0.98469 0.98549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.57 10.56 21.65 0.23 -61.34 16 2 C -0.06 -3.82 5.46 84.86 0.46 -3.36 16 3 Si 0.98 47.88 29.55 68.60 2.03 49.90 16 4 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 5 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 6 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.25 -14.45 10.21 84.03 0.86 -13.59 16 8 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 9 N -0.62 -33.17 3.37 -698.76 -2.36 -35.53 16 10 C 0.14 5.30 6.66 86.45 0.58 5.88 16 11 C -0.09 -2.64 3.91 -9.33 -0.04 -2.68 16 12 H 0.14 2.88 8.14 -2.39 -0.02 2.87 16 13 C -0.11 -2.73 6.24 31.87 0.20 -2.53 16 14 C 0.09 2.07 5.21 86.66 0.45 2.52 16 15 N -0.60 -20.62 2.89 -784.45 -2.27 -22.89 16 16 C 0.56 21.27 7.02 86.77 0.61 21.88 16 17 O -0.56 -26.55 15.40 -3.90 -0.06 -26.61 16 18 C -0.11 -3.05 5.49 -20.08 -0.11 -3.16 16 19 C -0.11 -2.20 7.96 22.57 0.18 -2.02 16 20 C 0.10 1.64 7.29 22.33 0.16 1.80 16 21 F -0.13 -1.94 17.26 44.97 0.78 -1.16 16 22 C -0.10 -1.36 10.02 22.36 0.22 -1.14 16 23 C -0.08 -1.44 9.81 22.25 0.22 -1.23 16 24 C -0.03 -0.71 6.33 22.60 0.14 -0.57 16 25 Cl -0.06 -2.18 26.75 -2.72 -0.07 -2.25 16 26 C 0.12 4.65 3.82 46.00 0.18 4.82 16 27 H 0.08 3.07 8.14 -2.39 -0.02 3.06 16 28 C 0.20 10.90 4.60 86.75 0.40 11.30 16 29 H 0.24 15.57 8.31 -92.71 -0.77 14.80 16 30 H 0.04 1.33 7.74 -2.39 -0.02 1.31 16 31 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.58 7.88 -2.38 -0.02 1.56 16 33 H 0.13 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.09 1.75 6.81 -2.38 -0.02 1.73 16 35 H 0.11 1.57 7.24 -2.39 -0.02 1.56 16 36 H 0.17 2.63 5.68 -2.91 -0.02 2.62 16 37 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 38 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.00 -0.21 7.34 -2.39 -0.02 -0.23 16 40 H 0.00 -0.21 7.51 -2.39 -0.02 -0.23 16 Total: -1.00 -84.07 342.17 3.86 -80.21 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: 1.08 Total: 1.73 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 4.51 Total: 17.93 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -4.40 Total: -119.75 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.06 Total: -26.61 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.78 Total: -1.16 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.90 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -0.07 Total: -2.25 kcal Total: -84.07 3.86 -80.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076282035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.497 kcal (2) G-P(sol) polarization free energy of solvation -84.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds