Wall clock time and date at job start Tue Mar 31 2020 20:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00303 * 2 1 4 4 H 1.48494 * 109.47219 * 239.99842 * 3 2 1 5 5 H 1.48504 * 109.47005 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46939 * 119.99833 * 3 2 1 7 7 C 1.38814 * 119.99594 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99676 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00580 * 0.02562 * 7 2 1 10 10 C 1.46580 * 125.30773 * 180.02562 * 9 7 2 11 11 C 1.53268 * 108.15684 * 177.88920 * 10 9 7 12 12 H 1.09001 * 112.58508 * 222.76189 * 11 10 9 13 13 C 1.54797 * 110.31312 * 95.99586 * 11 10 9 14 14 C 1.54934 * 101.50281 * 212.07099 * 13 11 10 15 15 N 1.47369 * 105.09940 * 36.73579 * 14 13 11 16 16 C 1.34773 * 125.53153 * 156.51534 * 15 14 13 17 17 O 1.21564 * 119.99995 * 177.08532 * 16 15 14 18 18 C 1.47773 * 120.00115 * 357.07560 * 16 15 14 19 19 C 1.39643 * 120.14166 * 36.36528 * 18 16 15 20 20 C 1.37895 * 119.91593 * 179.80838 * 19 18 16 21 21 C 1.38404 * 120.20461 * 0.45023 * 20 19 18 22 22 C 1.38456 * 120.29092 * 359.78070 * 21 20 19 23 23 F 1.35106 * 119.95563 * 179.97438 * 22 21 20 24 24 C 1.38385 * 120.08498 * 0.02562 * 22 21 20 25 25 Cl 1.73605 * 120.10340 * 179.97438 * 24 22 21 26 26 C 1.47217 * 108.93138 * 337.40776 * 15 14 13 27 27 H 1.09001 * 112.28836 * 235.34933 * 26 15 14 28 28 C 1.47297 * 125.39879 * 0.68897 * 9 7 2 29 29 H 0.97001 * 120.00232 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.73859 * 58.20495 * 10 9 7 31 31 H 1.09002 * 109.73719 * 297.57332 * 10 9 7 32 32 H 1.08997 * 111.01959 * 330.12862 * 13 11 10 33 33 H 1.09002 * 111.01757 * 93.97962 * 13 11 10 34 34 H 1.08998 * 110.35942 * 156.08844 * 14 13 11 35 35 H 1.09002 * 110.35685 * 278.38441 * 14 13 11 36 36 H 1.08005 * 120.03946 * 0.02562 * 19 18 16 37 37 H 1.07998 * 119.89619 * 180.21240 * 20 19 18 38 38 H 1.08000 * 119.84921 * 179.76402 * 21 20 19 39 39 H 1.09000 * 110.83156 * 78.48559 * 28 9 7 40 40 H 1.09000 * 109.33203 * 316.99063 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3882 0.0005 10 6 1.9378 -3.7199 0.0016 11 6 0.8151 -4.7618 0.0548 12 1 1.0331 -5.5774 0.7444 13 6 0.4773 -5.2612 -1.3709 14 6 -1.0390 -5.5533 -1.2448 15 7 -1.5616 -4.4958 -0.3614 16 6 -2.8403 -4.0725 -0.3180 17 8 -3.1736 -3.2269 0.4893 18 6 -3.8373 -4.6359 -1.2519 19 6 -3.7777 -5.9839 -1.6118 20 6 -4.7128 -6.5057 -2.4805 21 6 -5.7050 -5.6954 -3.0045 22 6 -5.7692 -4.3566 -2.6573 23 9 -6.7403 -3.5717 -3.1733 24 6 -4.8394 -3.8213 -1.7833 25 17 -4.9190 -2.1426 -1.3482 26 6 -0.4556 -3.9622 0.4507 27 1 -0.6644 -4.0151 1.5192 28 6 -0.1409 -2.5268 -0.0144 29 1 -0.4850 0.8400 0.0004 30 1 2.5821 -3.8282 0.8742 31 1 2.5238 -3.8564 -0.9073 32 1 0.6655 -4.4844 -2.1120 33 1 1.0324 -6.1686 -1.6091 34 1 -1.5166 -5.5080 -2.2235 35 1 -1.2004 -6.5298 -0.7881 36 1 -3.0024 -6.6177 -1.2073 37 1 -4.6685 -7.5491 -2.7559 38 1 -6.4322 -6.1093 -3.6875 39 1 -0.5351 -2.3671 -1.0180 40 1 -0.5784 -1.8077 0.6780 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076288630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:07 Heat of formation + Delta-G solvation = -6.862781 kcal Electronic energy + Delta-G solvation = -27483.020792 eV Core-core repulsion = 23432.655090 eV Total energy + Delta-G solvation = -4050.365702 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.15035 -40.53389 -39.03422 -37.49065 -36.42892 -34.99099 -32.47146 -31.34683 -30.73749 -30.67243 -28.55296 -26.86808 -24.70285 -24.29559 -23.00951 -22.37134 -20.70104 -19.93894 -19.02593 -17.92755 -16.98377 -16.84564 -16.71792 -16.10336 -15.98587 -15.60855 -15.12323 -14.61729 -14.54549 -14.18671 -13.75076 -13.61891 -13.37289 -13.03385 -12.87692 -12.64687 -12.35413 -12.17009 -11.96138 -11.84910 -11.60914 -11.53909 -11.20651 -11.05123 -10.87678 -10.76309 -10.46847 -10.21655 -10.04587 -9.75840 -9.69199 -9.53921 -9.22312 -8.91157 -8.58159 -8.24899 -6.80746 -5.60071 -3.02767 0.47696 0.70150 2.04368 2.74303 3.01296 3.43706 3.47244 3.47563 3.50247 3.86154 4.26208 4.43948 4.51955 4.57031 4.73003 4.81985 4.89123 5.10340 5.15287 5.38973 5.44206 5.51373 5.55966 5.58624 5.64934 5.70316 5.78719 5.85372 5.89542 5.99166 6.19815 6.29633 6.31282 6.50540 6.56933 6.65505 6.86272 7.50967 7.65012 7.81761 7.96292 8.36871 8.45102 9.25331 9.87115 10.49151 11.44067 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013878 B = 0.004090 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.123436 B = 6843.731003 C = 8360.321922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.234 4.234 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.109 4.109 12 H 0.087 0.913 13 C -0.123 4.123 14 C 0.096 3.904 15 N -0.599 5.599 16 C 0.565 3.435 17 O -0.498 6.498 18 C -0.084 4.084 19 C -0.096 4.096 20 C -0.096 4.096 21 C -0.127 4.127 22 C 0.100 3.900 23 F -0.125 7.125 24 C -0.033 4.033 25 Cl -0.009 7.009 26 C 0.116 3.884 27 H 0.086 0.914 28 C 0.164 3.836 29 H 0.254 0.746 30 H 0.025 0.975 31 H 0.024 0.976 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.020 0.980 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.007 -18.183 -6.320 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.362 4.362 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.019 3.981 11 C -0.128 4.128 12 H 0.106 0.894 13 C -0.161 4.161 14 C -0.027 4.027 15 N -0.334 5.334 16 C 0.351 3.649 17 O -0.372 6.372 18 C -0.088 4.088 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.146 4.146 22 C 0.080 3.920 23 F -0.103 7.103 24 C -0.062 4.062 25 Cl 0.020 6.980 26 C 0.013 3.987 27 H 0.103 0.897 28 C 0.038 3.962 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.038 0.962 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.371 -17.248 -5.830 20.476 hybrid contribution 0.234 1.075 -0.269 1.133 sum -9.137 -16.172 -6.099 19.550 Atomic orbital electron populations 1.69888 1.04749 1.25105 1.56264 1.24834 0.95675 0.97719 1.01993 0.86203 0.78422 0.83290 0.77840 1.21234 1.21585 1.21094 1.18967 0.90365 0.82273 1.44586 0.90418 1.44311 1.01457 0.99867 1.87209 1.20966 0.93309 0.85586 0.98237 1.22873 0.95808 0.97928 0.96218 0.89423 1.22804 0.93681 1.01808 0.97785 1.22551 0.95395 0.90509 0.94251 1.48379 1.07215 1.37580 1.40189 1.17504 0.80982 0.82337 0.84067 1.90899 1.78463 1.30342 1.37479 1.19806 0.96064 0.94051 0.98896 1.21643 0.99332 0.93597 0.96887 1.21031 0.93552 1.00373 0.96436 1.21271 1.00666 0.91119 1.01592 1.17280 0.88333 0.89363 0.97004 1.91556 1.59909 1.73965 1.84897 1.21111 0.96679 0.89439 0.98951 1.98474 1.97523 1.10604 1.91386 1.22993 0.83334 0.97690 0.94719 0.89651 1.21801 0.84297 0.90083 1.00015 0.93551 0.95758 0.95784 0.89860 0.90179 0.90686 0.91495 0.83500 0.83818 0.83566 0.96171 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.85 10.16 55.49 0.56 -27.29 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.23 -6.58 10.25 -15.06 -0.15 -6.73 16 8 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 9 N -0.60 -15.43 3.39 -171.67 -0.58 -16.02 16 10 C 0.15 2.89 6.68 -3.86 -0.03 2.87 16 11 C -0.11 -1.73 3.87 -88.33 -0.34 -2.07 16 12 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.12 -1.60 6.26 -24.76 -0.16 -1.75 16 14 C 0.10 1.14 5.13 -2.55 -0.01 1.13 16 15 N -0.60 -10.03 2.88 -162.79 -0.47 -10.50 16 16 C 0.56 10.27 7.07 -12.36 -0.09 10.19 16 17 O -0.50 -11.11 15.33 5.31 0.08 -11.02 16 18 C -0.08 -1.22 5.50 -104.95 -0.58 -1.79 16 19 C -0.10 -0.95 7.94 -39.18 -0.31 -1.26 16 20 C -0.10 -0.72 10.03 -39.65 -0.40 -1.12 16 21 C -0.13 -1.11 10.02 -39.44 -0.40 -1.51 16 22 C 0.10 1.24 7.27 -39.45 -0.29 0.96 16 23 F -0.12 -1.62 16.83 2.25 0.04 -1.58 16 24 C -0.03 -0.50 6.34 -39.00 -0.25 -0.74 16 25 Cl -0.01 -0.17 26.37 -51.86 -1.37 -1.54 16 26 C 0.12 2.24 3.82 -65.75 -0.25 1.99 16 27 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 28 C 0.16 4.12 4.98 -3.02 -0.02 4.10 16 29 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.47 7.77 -51.93 -0.40 0.07 16 32 H 0.08 1.30 7.92 -51.93 -0.41 0.89 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.80 6.72 -51.93 -0.35 0.46 16 35 H 0.07 0.59 7.14 -51.93 -0.37 0.22 16 36 H 0.15 1.14 5.48 -52.48 -0.29 0.85 16 37 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.02 0.57 7.96 -51.93 -0.41 0.15 16 40 H 0.10 2.93 6.18 -51.93 -0.32 2.61 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -34.35 340.46 -9.62 -43.97 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.64 Total: -2.70 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -3.35 Total: 4.00 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.49 Total: -53.80 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.37 Total: -1.54 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.35 -9.62 -43.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076288630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.109 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds