Wall clock time and date at job start Tue Mar 31 2020 20:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00303 * 2 1 4 4 H 1.48494 * 109.47219 * 239.99842 * 3 2 1 5 5 H 1.48504 * 109.47005 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46939 * 119.99833 * 3 2 1 7 7 C 1.38814 * 119.99594 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99676 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00580 * 0.02562 * 7 2 1 10 10 C 1.46580 * 125.30773 * 180.02562 * 9 7 2 11 11 C 1.53268 * 108.15684 * 177.88920 * 10 9 7 12 12 H 1.09001 * 112.58508 * 222.76189 * 11 10 9 13 13 C 1.54797 * 110.31312 * 95.99586 * 11 10 9 14 14 C 1.54934 * 101.50281 * 212.07099 * 13 11 10 15 15 N 1.47369 * 105.09940 * 36.73579 * 14 13 11 16 16 C 1.34773 * 125.53153 * 156.51534 * 15 14 13 17 17 O 1.21564 * 119.99995 * 177.08532 * 16 15 14 18 18 C 1.47773 * 120.00115 * 357.07560 * 16 15 14 19 19 C 1.39643 * 120.14166 * 36.36528 * 18 16 15 20 20 C 1.37895 * 119.91593 * 179.80838 * 19 18 16 21 21 C 1.38404 * 120.20461 * 0.45023 * 20 19 18 22 22 C 1.38456 * 120.29092 * 359.78070 * 21 20 19 23 23 F 1.35106 * 119.95563 * 179.97438 * 22 21 20 24 24 C 1.38385 * 120.08498 * 0.02562 * 22 21 20 25 25 Cl 1.73605 * 120.10340 * 179.97438 * 24 22 21 26 26 C 1.47217 * 108.93138 * 337.40776 * 15 14 13 27 27 H 1.09001 * 112.28836 * 235.34933 * 26 15 14 28 28 C 1.47297 * 125.39879 * 0.68897 * 9 7 2 29 29 H 0.97001 * 120.00232 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.73859 * 58.20495 * 10 9 7 31 31 H 1.09002 * 109.73719 * 297.57332 * 10 9 7 32 32 H 1.08997 * 111.01959 * 330.12862 * 13 11 10 33 33 H 1.09002 * 111.01757 * 93.97962 * 13 11 10 34 34 H 1.08998 * 110.35942 * 156.08844 * 14 13 11 35 35 H 1.09002 * 110.35685 * 278.38441 * 14 13 11 36 36 H 1.08005 * 120.03946 * 0.02562 * 19 18 16 37 37 H 1.07998 * 119.89619 * 180.21240 * 20 19 18 38 38 H 1.08000 * 119.84921 * 179.76402 * 21 20 19 39 39 H 1.09000 * 110.83156 * 78.48559 * 28 9 7 40 40 H 1.09000 * 109.33203 * 316.99063 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3882 0.0005 10 6 1.9378 -3.7199 0.0016 11 6 0.8151 -4.7618 0.0548 12 1 1.0331 -5.5774 0.7444 13 6 0.4773 -5.2612 -1.3709 14 6 -1.0390 -5.5533 -1.2448 15 7 -1.5616 -4.4958 -0.3614 16 6 -2.8403 -4.0725 -0.3180 17 8 -3.1736 -3.2269 0.4893 18 6 -3.8373 -4.6359 -1.2519 19 6 -3.7777 -5.9839 -1.6118 20 6 -4.7128 -6.5057 -2.4805 21 6 -5.7050 -5.6954 -3.0045 22 6 -5.7692 -4.3566 -2.6573 23 9 -6.7403 -3.5717 -3.1733 24 6 -4.8394 -3.8213 -1.7833 25 17 -4.9190 -2.1426 -1.3482 26 6 -0.4556 -3.9622 0.4507 27 1 -0.6644 -4.0151 1.5192 28 6 -0.1409 -2.5268 -0.0144 29 1 -0.4850 0.8400 0.0004 30 1 2.5821 -3.8282 0.8742 31 1 2.5238 -3.8564 -0.9073 32 1 0.6655 -4.4844 -2.1120 33 1 1.0324 -6.1686 -1.6091 34 1 -1.5166 -5.5080 -2.2235 35 1 -1.2004 -6.5298 -0.7881 36 1 -3.0024 -6.6177 -1.2073 37 1 -4.6685 -7.5491 -2.7559 38 1 -6.4322 -6.1093 -3.6875 39 1 -0.5351 -2.3671 -1.0180 40 1 -0.5784 -1.8077 0.6780 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076288630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:06 Heat of formation + Delta-G solvation = -29.880122 kcal Electronic energy + Delta-G solvation = -27484.018899 eV Core-core repulsion = 23432.655090 eV Total energy + Delta-G solvation = -4051.363809 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.09439 -41.78587 -40.17956 -38.82274 -37.61572 -36.66448 -34.21064 -32.54901 -32.07799 -31.64072 -30.20037 -28.42042 -26.54315 -25.49959 -23.91139 -23.45246 -22.36617 -21.29502 -20.42103 -19.10085 -18.84132 -17.81540 -17.76630 -17.28646 -17.20630 -16.85484 -16.44471 -16.29704 -15.70972 -15.42942 -15.09193 -15.05938 -14.66536 -14.25585 -14.16731 -13.92539 -13.76742 -13.62640 -13.22687 -13.10009 -13.01765 -12.78332 -12.73480 -12.61296 -12.51142 -12.25020 -12.12473 -11.87383 -11.68281 -11.46886 -11.39353 -10.91869 -10.74957 -10.15059 -9.84025 -9.62623 -8.92742 -7.80215 -5.25770 -0.42499 -0.14034 0.94917 1.40338 1.44983 1.51770 1.57207 1.89420 2.44875 2.46640 2.94613 3.26438 3.31217 3.53543 3.60318 3.73532 3.77815 3.84567 4.02606 4.08034 4.31245 4.32442 4.38344 4.50507 4.54245 4.64154 4.71480 4.81550 4.85551 4.96234 5.03092 5.10568 5.13179 5.19980 5.21758 5.45446 5.50111 5.55637 5.61094 5.79763 6.23296 6.52104 7.03538 7.11159 7.76971 8.37829 9.21368 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013878 B = 0.004090 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.123436 B = 6843.731003 C = 8360.321922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.071 4.071 3 Si 0.980 3.020 4 H -0.272 1.272 5 H -0.301 1.301 6 H -0.271 1.271 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.625 5.625 10 C 0.135 3.865 11 C -0.091 4.091 12 H 0.134 0.866 13 C -0.115 4.115 14 C 0.091 3.909 15 N -0.600 5.600 16 C 0.555 3.445 17 O -0.561 6.561 18 C -0.110 4.110 19 C -0.081 4.081 20 C -0.068 4.068 21 C -0.107 4.107 22 C 0.083 3.917 23 F -0.136 7.136 24 C -0.064 4.064 25 Cl -0.062 7.062 26 C 0.120 3.880 27 H 0.071 0.929 28 C 0.183 3.817 29 H 0.241 0.759 30 H 0.032 0.968 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.133 0.867 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.179 0.821 37 H 0.202 0.798 38 H 0.186 0.814 39 H -0.024 1.024 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.990 -23.980 -8.089 26.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.263 4.263 3 Si 0.808 3.192 4 H -0.198 1.198 5 H -0.228 1.228 6 H -0.197 1.197 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.352 5.352 10 C 0.011 3.989 11 C -0.110 4.110 12 H 0.152 0.848 13 C -0.153 4.153 14 C -0.030 4.030 15 N -0.333 5.333 16 C 0.343 3.657 17 O -0.439 6.439 18 C -0.114 4.114 19 C -0.099 4.099 20 C -0.085 4.085 21 C -0.125 4.125 22 C 0.063 3.937 23 F -0.114 7.114 24 C -0.093 4.093 25 Cl -0.033 7.033 26 C 0.015 3.985 27 H 0.090 0.910 28 C 0.057 3.943 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.151 0.849 34 H 0.110 0.890 35 H 0.138 0.862 36 H 0.196 0.804 37 H 0.219 0.781 38 H 0.203 0.797 39 H -0.006 1.006 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.303 -23.122 -7.630 25.725 hybrid contribution -0.060 2.749 0.228 2.759 sum -8.363 -20.373 -7.402 23.234 Atomic orbital electron populations 1.70257 1.06593 1.24789 1.58235 1.25765 0.96414 1.01498 1.02666 0.85130 0.77009 0.78512 0.78588 1.19823 1.22753 1.19697 1.19471 0.91168 0.83596 1.42888 0.89242 1.44639 1.01940 1.01658 1.86954 1.21279 0.94945 0.83899 0.98815 1.22930 0.91387 0.97291 0.99352 0.84796 1.22838 0.95135 1.02813 0.94521 1.23008 0.94309 0.90918 0.94738 1.48469 1.06185 1.38282 1.40368 1.18259 0.81983 0.81538 0.83899 1.90857 1.79782 1.33142 1.40133 1.19641 0.95599 0.96233 0.99878 1.22042 1.00399 0.91164 0.96277 1.21680 0.90877 1.02460 0.93476 1.21837 1.01159 0.88886 1.00635 1.17636 0.87918 0.90909 0.97211 1.91526 1.60203 1.74687 1.85000 1.21388 0.98998 0.87345 1.01536 1.98444 1.97810 1.14915 1.92088 1.22621 0.86513 0.94876 0.94450 0.91046 1.21273 0.84041 0.93030 0.95966 0.94983 0.94958 0.94632 0.93383 0.84913 0.89017 0.86163 0.80410 0.78078 0.79661 1.00614 0.94364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.86 10.16 21.65 0.22 -62.64 16 2 C -0.07 -4.30 5.48 84.86 0.47 -3.83 16 3 Si 0.98 48.43 29.55 68.60 2.03 50.46 16 4 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 6 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.24 -14.13 10.25 84.03 0.86 -13.27 16 8 H 0.09 4.86 7.83 -2.91 -0.02 4.84 16 9 N -0.63 -33.35 3.39 -697.03 -2.36 -35.72 16 10 C 0.14 5.24 6.68 86.45 0.58 5.82 16 11 C -0.09 -2.61 3.87 -9.31 -0.04 -2.65 16 12 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 13 C -0.12 -2.52 6.26 31.87 0.20 -2.32 16 14 C 0.09 1.75 5.13 86.87 0.45 2.20 16 15 N -0.60 -19.86 2.88 -787.23 -2.27 -22.13 16 16 C 0.55 21.06 7.07 86.77 0.61 21.67 16 17 O -0.56 -27.56 15.33 -3.92 -0.06 -27.62 16 18 C -0.11 -3.11 5.50 -20.08 -0.11 -3.22 16 19 C -0.08 -1.20 7.94 22.53 0.18 -1.02 16 20 C -0.07 -0.55 10.03 22.23 0.22 -0.33 16 21 C -0.11 -1.34 10.02 22.36 0.22 -1.11 16 22 C 0.08 1.98 7.27 22.36 0.16 2.14 16 23 F -0.14 -3.56 16.83 44.97 0.76 -2.80 16 24 C -0.06 -2.01 6.34 22.64 0.14 -1.87 16 25 Cl -0.06 -2.48 26.37 -2.72 -0.07 -2.55 16 26 C 0.12 4.75 3.82 46.01 0.18 4.92 16 27 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 28 C 0.18 9.95 4.98 86.61 0.43 10.38 16 29 H 0.24 15.81 8.31 -92.71 -0.77 15.04 16 30 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.04 1.31 7.77 -2.39 -0.02 1.30 16 32 H 0.05 1.41 7.92 -2.39 -0.02 1.39 16 33 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.09 1.52 6.72 -2.39 -0.02 1.51 16 35 H 0.12 1.17 7.14 -2.39 -0.02 1.15 16 36 H 0.18 1.50 5.48 -2.91 -0.02 1.48 16 37 H 0.20 -0.43 8.06 -2.91 -0.02 -0.46 16 38 H 0.19 0.95 8.06 -2.91 -0.02 0.92 16 39 H -0.02 -1.48 7.96 -2.39 -0.02 -1.50 16 40 H 0.04 2.52 6.18 -2.39 -0.01 2.51 16 Total: -1.00 -91.33 340.46 3.87 -87.45 By element: Atomic # 1 Polarization: -3.04 SS G_CDS: 1.08 Total: -1.95 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 4.55 Total: 17.51 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -4.42 Total: -120.49 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.06 Total: -27.62 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.76 Total: -2.80 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.46 kcal Atomic # 17 Polarization: -2.48 SS G_CDS: -0.07 Total: -2.55 kcal Total: -91.33 3.87 -87.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076288630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.570 kcal (2) G-P(sol) polarization free energy of solvation -91.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds