Wall clock time and date at job start Tue Mar 31 2020 20:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99700 * 2 1 4 4 H 1.48496 * 109.47091 * 239.99469 * 3 2 1 5 5 H 1.48497 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46805 * 119.99729 * 3 2 1 7 7 C 1.38808 * 120.00423 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00194 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99785 * 0.02562 * 7 2 1 10 10 C 1.46701 * 125.32299 * 180.02562 * 9 7 2 11 11 C 1.54039 * 106.83262 * 161.79780 * 10 9 7 12 12 H 1.09001 * 113.43486 * 262.67500 * 11 10 9 13 13 C 1.55120 * 108.26516 * 135.80265 * 11 10 9 14 14 C 1.54855 * 101.77839 * 285.18771 * 13 11 10 15 15 N 1.47395 * 104.81085 * 322.81214 * 14 13 11 16 16 C 1.34775 * 125.59049 * 204.61093 * 15 14 13 17 17 O 1.21582 * 119.99725 * 184.64148 * 16 15 14 18 18 C 1.47647 * 119.99916 * 4.36489 * 16 15 14 19 19 C 1.39700 * 120.12797 * 319.07526 * 18 16 15 20 20 C 1.37786 * 119.88787 * 179.69858 * 19 18 16 21 21 C 1.38713 * 120.15633 * 0.59596 * 20 19 18 22 22 F 1.35099 * 119.87053 * 179.69698 * 21 20 19 23 23 C 1.38561 * 120.26295 * 359.68101 * 21 20 19 24 24 C 1.38030 * 120.10820 * 0.02562 * 23 21 20 25 25 Cl 1.73597 * 120.08163 * 180.02562 * 24 23 21 26 26 C 1.46731 * 108.82025 * 24.86771 * 15 14 13 27 27 H 1.09005 * 111.33558 * 235.86143 * 26 15 14 28 28 C 1.46634 * 125.32301 * 359.96795 * 9 7 2 29 29 H 0.96995 * 119.99818 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.99080 * 42.44936 * 10 9 7 31 31 H 1.09004 * 109.98654 * 281.14018 * 10 9 7 32 32 H 1.08994 * 110.96979 * 167.06011 * 13 11 10 33 33 H 1.09008 * 110.96628 * 43.30330 * 13 11 10 34 34 H 1.09001 * 110.37169 * 203.98092 * 14 13 11 35 35 H 1.09002 * 110.36875 * 81.64637 * 14 13 11 36 36 H 1.07997 * 120.05441 * 359.97438 * 19 18 16 37 37 H 1.07999 * 119.91845 * 180.27518 * 20 19 18 38 38 H 1.08004 * 119.95061 * 180.02562 * 23 21 20 39 39 H 1.09001 * 109.76038 * 300.95585 * 28 9 7 40 40 H 1.09002 * 109.75334 * 61.65325 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.9382 -3.7210 0.0016 11 6 0.8514 -4.7109 0.4618 12 1 0.9092 -4.9560 1.5223 13 6 0.9038 -5.9550 -0.4633 14 6 0.2544 -5.4122 -1.7601 15 7 -0.8168 -4.5120 -1.2968 16 6 -1.9211 -4.1822 -1.9956 17 8 -2.7005 -3.3626 -1.5494 18 6 -2.1812 -4.8116 -3.3056 19 6 -1.1333 -5.0123 -4.2075 20 6 -1.3806 -5.6058 -5.4261 21 6 -2.6690 -5.9930 -5.7641 22 9 -2.9058 -6.5689 -6.9630 23 6 -3.7140 -5.7918 -4.8767 24 6 -3.4777 -5.2037 -3.6505 25 17 -4.7873 -4.9525 -2.5391 26 6 -0.4809 -4.0290 0.0474 27 1 -1.2770 -4.2498 0.7586 28 6 -0.1343 -2.5241 0.0007 29 1 -0.4849 0.8400 -0.0004 30 1 2.7801 -3.7437 0.6936 31 1 2.2744 -3.9774 -1.0031 32 1 0.3185 -6.7751 -0.0477 33 1 1.9335 -6.2645 -0.6428 34 1 -0.1644 -6.2304 -2.3460 35 1 0.9868 -4.8592 -2.3484 36 1 -0.1305 -4.7068 -3.9481 37 1 -0.5701 -5.7652 -6.1219 38 1 -4.7151 -6.0955 -5.1449 39 1 -0.5501 -2.0330 0.8804 40 1 -0.5464 -2.0732 -0.9021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076525497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:11 Heat of formation + Delta-G solvation = -12.394614 kcal Electronic energy + Delta-G solvation = -27414.718393 eV Core-core repulsion = 23364.112812 eV Total energy + Delta-G solvation = -4050.605580 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.29066 -40.56598 -39.10626 -37.43637 -36.55820 -34.84014 -32.41821 -31.32153 -30.90880 -30.81551 -28.65213 -26.45711 -24.77549 -24.15661 -23.32897 -22.27788 -20.85447 -19.86049 -18.99825 -18.01805 -17.44092 -16.80222 -16.68030 -16.23620 -15.95983 -15.08533 -14.94764 -14.70386 -14.33896 -14.21305 -13.97919 -13.70040 -13.50217 -13.22899 -13.16349 -12.69309 -12.60784 -12.15472 -11.91837 -11.69071 -11.53375 -11.48750 -11.09394 -11.07261 -11.00307 -10.71892 -10.49737 -10.27547 -10.16994 -9.86158 -9.69431 -9.52384 -9.30769 -8.95165 -8.57231 -8.20634 -6.80133 -5.65801 -3.02359 0.44667 0.72757 1.87865 2.73948 3.16445 3.39402 3.42109 3.46081 3.48729 3.84848 4.32384 4.42047 4.50932 4.55052 4.72763 4.85450 4.92190 5.08162 5.10230 5.44207 5.46972 5.49678 5.53029 5.56178 5.69827 5.71507 5.72669 5.80378 5.83774 5.99300 6.16438 6.28128 6.31974 6.44099 6.53603 6.61969 6.84177 7.55524 7.66214 7.86296 7.93177 8.30997 8.46849 9.25301 9.86251 10.49437 11.43729 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013874 B = 0.003575 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.697188 B = 7829.854148 C = 8067.067495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.004 4.004 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.236 4.236 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.143 3.857 11 C -0.111 4.111 12 H 0.098 0.902 13 C -0.124 4.124 14 C 0.095 3.905 15 N -0.595 5.595 16 C 0.567 3.433 17 O -0.501 6.501 18 C -0.119 4.119 19 C -0.050 4.050 20 C -0.155 4.155 21 C 0.127 3.873 22 F -0.131 7.131 23 C -0.156 4.156 24 C 0.033 3.967 25 Cl -0.028 7.028 26 C 0.115 3.885 27 H 0.081 0.919 28 C 0.178 3.822 29 H 0.254 0.746 30 H 0.035 0.965 31 H 0.017 0.983 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.052 0.948 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 -17.594 -8.656 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.201 4.201 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.365 4.365 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.017 3.983 11 C -0.130 4.130 12 H 0.116 0.884 13 C -0.163 4.163 14 C -0.028 4.028 15 N -0.330 5.330 16 C 0.353 3.647 17 O -0.375 6.375 18 C -0.123 4.123 19 C -0.068 4.068 20 C -0.173 4.173 21 C 0.107 3.893 22 F -0.109 7.109 23 C -0.175 4.175 24 C 0.005 3.995 25 Cl 0.001 6.999 26 C 0.012 3.988 27 H 0.099 0.901 28 C 0.052 3.948 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.035 0.965 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.170 0.830 37 H 0.165 0.835 38 H 0.168 0.832 39 H 0.070 0.930 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.182 -16.866 -8.384 19.294 hybrid contribution 0.339 0.809 -0.279 0.920 sum -3.843 -16.057 -8.663 18.645 Atomic orbital electron populations 1.69974 1.04758 1.25270 1.56076 1.24834 0.95667 0.97677 1.01955 0.86232 0.78450 0.83404 0.77825 1.21228 1.21587 1.21147 1.18946 0.90301 0.82308 1.44896 0.90498 1.44197 1.01457 0.99925 1.87332 1.21293 0.93907 0.85920 0.97226 1.23168 0.95734 0.94671 0.99474 0.88411 1.22768 1.01124 0.97447 0.94939 1.22518 0.89920 0.92777 0.97550 1.48252 1.19944 1.46776 1.17980 1.17460 0.81095 0.82516 0.83608 1.90898 1.46144 1.31508 1.68999 1.20002 0.92481 1.02723 0.97124 1.21396 0.99379 0.94271 0.91785 1.21183 0.95809 1.01921 0.98433 1.17627 0.93693 0.96463 0.81533 1.91536 1.95198 1.81784 1.42428 1.20898 1.00297 1.03615 0.92708 1.20617 0.89161 0.98067 0.91653 1.98432 1.45876 1.94796 1.60781 1.22866 0.95710 0.98258 0.81976 0.90053 1.21399 0.84152 0.86953 1.02255 0.93549 0.94730 0.96519 0.90978 0.89837 0.90977 0.90878 0.83044 0.83458 0.83164 0.93042 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.67 10.24 55.49 0.57 -27.10 16 2 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.56 10.25 -15.06 -0.15 -6.72 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -15.15 3.38 -171.39 -0.58 -15.73 16 10 C 0.14 2.75 6.46 -3.39 -0.02 2.73 16 11 C -0.11 -1.74 4.28 -87.74 -0.38 -2.11 16 12 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 13 C -0.12 -1.44 6.34 -24.63 -0.16 -1.59 16 14 C 0.10 1.20 4.77 -2.57 -0.01 1.19 16 15 N -0.60 -10.05 2.98 -162.98 -0.49 -10.54 16 16 C 0.57 10.27 6.76 -12.42 -0.08 10.18 16 17 O -0.50 -11.10 15.14 5.29 0.08 -11.02 16 18 C -0.12 -1.71 5.40 -104.94 -0.57 -2.28 16 19 C -0.05 -0.57 7.95 -39.20 -0.31 -0.88 16 20 C -0.15 -1.47 10.01 -39.57 -0.40 -1.86 16 21 C 0.13 1.29 7.30 -39.29 -0.29 1.00 16 22 F -0.13 -1.32 17.26 2.25 0.04 -1.28 16 23 C -0.16 -1.66 9.79 -39.54 -0.39 -2.05 16 24 C 0.03 0.44 6.33 -39.08 -0.25 0.19 16 25 Cl -0.03 -0.40 26.86 -51.86 -1.39 -1.80 16 26 C 0.12 2.18 3.68 -65.80 -0.24 1.94 16 27 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 28 C 0.18 4.43 4.90 -3.18 -0.02 4.41 16 29 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.02 0.32 6.59 -51.93 -0.34 -0.02 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.81 8.07 -51.92 -0.42 0.39 16 34 H 0.07 0.73 6.74 -51.93 -0.35 0.38 16 35 H 0.07 0.94 6.42 -51.93 -0.33 0.61 16 36 H 0.15 1.61 5.93 -52.49 -0.31 1.30 16 37 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.15 1.30 8.06 -52.48 -0.42 0.87 16 39 H 0.05 1.46 7.33 -51.93 -0.38 1.08 16 40 H 0.06 1.63 6.67 -51.93 -0.35 1.28 16 LS Contribution 339.02 15.07 5.11 5.11 Total: -1.00 -33.30 339.02 -9.60 -42.91 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -4.57 Total: -1.77 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -3.35 Total: 3.93 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.50 Total: -53.37 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.39 Total: -1.80 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.30 -9.60 -42.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076525497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.511 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds