Wall clock time and date at job start Tue Mar 31 2020 20:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99700 * 2 1 4 4 H 1.48496 * 109.47091 * 239.99469 * 3 2 1 5 5 H 1.48497 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46805 * 119.99729 * 3 2 1 7 7 C 1.38808 * 120.00423 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00194 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99785 * 0.02562 * 7 2 1 10 10 C 1.46701 * 125.32299 * 180.02562 * 9 7 2 11 11 C 1.54039 * 106.83262 * 161.79780 * 10 9 7 12 12 H 1.09001 * 113.43486 * 262.67500 * 11 10 9 13 13 C 1.55120 * 108.26516 * 135.80265 * 11 10 9 14 14 C 1.54855 * 101.77839 * 285.18771 * 13 11 10 15 15 N 1.47395 * 104.81085 * 322.81214 * 14 13 11 16 16 C 1.34775 * 125.59049 * 204.61093 * 15 14 13 17 17 O 1.21582 * 119.99725 * 184.64148 * 16 15 14 18 18 C 1.47647 * 119.99916 * 4.36489 * 16 15 14 19 19 C 1.39700 * 120.12797 * 319.07526 * 18 16 15 20 20 C 1.37786 * 119.88787 * 179.69858 * 19 18 16 21 21 C 1.38713 * 120.15633 * 0.59596 * 20 19 18 22 22 F 1.35099 * 119.87053 * 179.69698 * 21 20 19 23 23 C 1.38561 * 120.26295 * 359.68101 * 21 20 19 24 24 C 1.38030 * 120.10820 * 0.02562 * 23 21 20 25 25 Cl 1.73597 * 120.08163 * 180.02562 * 24 23 21 26 26 C 1.46731 * 108.82025 * 24.86771 * 15 14 13 27 27 H 1.09005 * 111.33558 * 235.86143 * 26 15 14 28 28 C 1.46634 * 125.32301 * 359.96795 * 9 7 2 29 29 H 0.96995 * 119.99818 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.99080 * 42.44936 * 10 9 7 31 31 H 1.09004 * 109.98654 * 281.14018 * 10 9 7 32 32 H 1.08994 * 110.96979 * 167.06011 * 13 11 10 33 33 H 1.09008 * 110.96628 * 43.30330 * 13 11 10 34 34 H 1.09001 * 110.37169 * 203.98092 * 14 13 11 35 35 H 1.09002 * 110.36875 * 81.64637 * 14 13 11 36 36 H 1.07997 * 120.05441 * 359.97438 * 19 18 16 37 37 H 1.07999 * 119.91845 * 180.27518 * 20 19 18 38 38 H 1.08004 * 119.95061 * 180.02562 * 23 21 20 39 39 H 1.09001 * 109.76038 * 300.95585 * 28 9 7 40 40 H 1.09002 * 109.75334 * 61.65325 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.9382 -3.7210 0.0016 11 6 0.8514 -4.7109 0.4618 12 1 0.9092 -4.9560 1.5223 13 6 0.9038 -5.9550 -0.4633 14 6 0.2544 -5.4122 -1.7601 15 7 -0.8168 -4.5120 -1.2968 16 6 -1.9211 -4.1822 -1.9956 17 8 -2.7005 -3.3626 -1.5494 18 6 -2.1812 -4.8116 -3.3056 19 6 -1.1333 -5.0123 -4.2075 20 6 -1.3806 -5.6058 -5.4261 21 6 -2.6690 -5.9930 -5.7641 22 9 -2.9058 -6.5689 -6.9630 23 6 -3.7140 -5.7918 -4.8767 24 6 -3.4777 -5.2037 -3.6505 25 17 -4.7873 -4.9525 -2.5391 26 6 -0.4809 -4.0290 0.0474 27 1 -1.2770 -4.2498 0.7586 28 6 -0.1343 -2.5241 0.0007 29 1 -0.4849 0.8400 -0.0004 30 1 2.7801 -3.7437 0.6936 31 1 2.2744 -3.9774 -1.0031 32 1 0.3185 -6.7751 -0.0477 33 1 1.9335 -6.2645 -0.6428 34 1 -0.1644 -6.2304 -2.3460 35 1 0.9868 -4.8592 -2.3484 36 1 -0.1305 -4.7068 -3.9481 37 1 -0.5701 -5.7652 -6.1219 38 1 -4.7151 -6.0955 -5.1449 39 1 -0.5501 -2.0330 0.8804 40 1 -0.5464 -2.0732 -0.9021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076525497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:10 Heat of formation + Delta-G solvation = -33.140284 kcal Electronic energy + Delta-G solvation = -27415.617993 eV Core-core repulsion = 23364.112812 eV Total energy + Delta-G solvation = -4051.505180 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.09840 -41.83782 -40.24706 -38.79701 -37.58089 -36.54134 -34.06089 -32.54982 -32.24040 -31.87575 -30.27026 -27.97537 -26.62778 -25.28904 -24.25608 -23.40986 -22.53429 -21.15886 -20.38406 -18.95337 -18.90022 -18.38380 -17.74595 -17.50594 -16.81238 -16.77967 -16.08688 -15.96447 -15.70255 -15.61271 -15.13439 -14.96038 -14.69007 -14.48790 -14.31249 -13.99639 -13.93372 -13.86863 -13.38541 -12.98478 -12.87748 -12.77539 -12.53380 -12.49723 -12.31607 -12.18296 -12.13414 -11.84039 -11.81461 -11.56086 -11.38709 -10.94426 -10.69496 -10.20231 -9.92277 -9.59746 -8.88092 -7.82306 -5.20879 -0.51026 -0.13130 0.89411 1.43206 1.47207 1.53968 1.60120 1.91712 2.31984 2.49213 2.98618 3.29019 3.34465 3.46712 3.59394 3.68086 3.80384 3.81258 3.96252 4.02205 4.17478 4.25898 4.41221 4.53075 4.56935 4.61278 4.70635 4.75281 4.85257 4.88164 4.94928 4.95380 5.12629 5.19636 5.30175 5.43177 5.46576 5.49457 5.64739 5.82113 6.20351 6.54005 7.08447 7.13023 7.80987 8.42537 9.25558 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013874 B = 0.003575 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.697188 B = 7829.854148 C = 8067.067495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.978 3.022 4 H -0.274 1.274 5 H -0.301 1.301 6 H -0.272 1.272 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.624 5.624 10 C 0.136 3.864 11 C -0.099 4.099 12 H 0.115 0.885 13 C -0.106 4.106 14 C 0.087 3.913 15 N -0.597 5.597 16 C 0.558 3.442 17 O -0.559 6.559 18 C -0.140 4.140 19 C -0.046 4.046 20 C -0.135 4.135 21 C 0.135 3.865 22 F -0.125 7.125 23 C -0.149 4.149 24 C 0.020 3.980 25 Cl -0.049 7.049 26 C 0.119 3.881 27 H 0.075 0.925 28 C 0.197 3.803 29 H 0.242 0.758 30 H 0.044 0.956 31 H 0.036 0.964 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.161 0.839 37 H 0.183 0.817 38 H 0.170 0.830 39 H -0.003 1.003 40 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.011 -20.772 -10.577 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.263 4.263 3 Si 0.806 3.194 4 H -0.199 1.199 5 H -0.228 1.228 6 H -0.198 1.198 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.350 5.350 10 C 0.011 3.989 11 C -0.118 4.118 12 H 0.133 0.867 13 C -0.144 4.144 14 C -0.034 4.034 15 N -0.329 5.329 16 C 0.347 3.653 17 O -0.438 6.438 18 C -0.144 4.144 19 C -0.064 4.064 20 C -0.153 4.153 21 C 0.115 3.885 22 F -0.104 7.104 23 C -0.168 4.168 24 C -0.007 4.007 25 Cl -0.020 7.020 26 C 0.015 3.985 27 H 0.093 0.907 28 C 0.071 3.929 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.115 0.885 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.092 0.908 36 H 0.178 0.822 37 H 0.201 0.799 38 H 0.187 0.813 39 H 0.015 0.985 40 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -1.641 -20.121 -10.322 22.674 hybrid contribution -0.395 1.751 0.241 1.812 sum -2.036 -18.369 -10.081 21.053 Atomic orbital electron populations 1.70287 1.06608 1.25015 1.58228 1.25736 0.96386 1.01404 1.02732 0.85159 0.77020 0.78711 0.78504 1.19950 1.22796 1.19804 1.19455 0.91117 0.83571 1.42927 0.89231 1.44501 1.01758 1.01713 1.87026 1.21597 0.95039 0.83788 0.98436 1.23153 0.91548 0.95624 1.01483 0.86691 1.22817 1.03465 0.95630 0.92516 1.22866 0.88812 0.92915 0.98765 1.48329 1.20645 1.46872 1.17059 1.18163 0.80616 0.81766 0.84742 1.90858 1.48144 1.34068 1.70738 1.19802 0.93957 1.04662 0.95966 1.21467 0.98873 0.94185 0.91907 1.21470 0.96440 0.99686 0.97744 1.17670 0.93769 0.95728 0.81334 1.91562 1.95193 1.81572 1.42050 1.21049 1.01639 1.02527 0.91570 1.20704 0.88320 0.99383 0.92341 1.98422 1.46731 1.95052 1.61763 1.22543 0.97582 0.94649 0.83774 0.90694 1.20904 0.84110 0.90653 0.97276 0.94892 0.93760 0.94670 0.88542 0.86530 0.87609 0.90816 0.82177 0.79950 0.81293 0.98459 0.97797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.57 10.24 21.65 0.22 -61.35 16 2 C -0.07 -4.12 5.48 84.86 0.47 -3.66 16 3 Si 0.98 47.16 29.55 68.60 2.03 49.18 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.24 -13.66 10.25 84.03 0.86 -12.79 16 8 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 9 N -0.62 -32.04 3.38 -696.17 -2.35 -34.39 16 10 C 0.14 4.98 6.46 86.69 0.56 5.54 16 11 C -0.10 -2.87 4.28 -8.93 -0.04 -2.91 16 12 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 13 C -0.11 -1.95 6.34 31.95 0.20 -1.75 16 14 C 0.09 1.92 4.77 86.84 0.41 2.33 16 15 N -0.60 -20.06 2.98 -787.81 -2.35 -22.41 16 16 C 0.56 20.93 6.76 86.73 0.59 21.52 16 17 O -0.56 -26.76 15.14 -3.97 -0.06 -26.82 16 18 C -0.14 -3.93 5.40 -20.07 -0.11 -4.04 16 19 C -0.05 -0.92 7.95 22.52 0.18 -0.75 16 20 C -0.14 -2.01 10.01 22.28 0.22 -1.78 16 21 C 0.13 2.27 7.30 22.46 0.16 2.43 16 22 F -0.13 -2.04 17.26 44.97 0.78 -1.27 16 23 C -0.15 -2.87 9.79 22.30 0.22 -2.65 16 24 C 0.02 0.53 6.33 22.59 0.14 0.68 16 25 Cl -0.05 -1.45 26.86 -2.72 -0.07 -1.52 16 26 C 0.12 4.62 3.68 46.25 0.17 4.79 16 27 H 0.08 2.96 8.14 -2.38 -0.02 2.94 16 28 C 0.20 10.46 4.90 86.86 0.43 10.88 16 29 H 0.24 15.47 8.31 -92.71 -0.77 14.70 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.04 1.20 6.59 -2.38 -0.02 1.18 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.12 1.50 8.07 -2.38 -0.02 1.48 16 34 H 0.11 1.66 6.74 -2.39 -0.02 1.65 16 35 H 0.07 1.64 6.42 -2.39 -0.02 1.62 16 36 H 0.16 2.94 5.93 -2.91 -0.02 2.92 16 37 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.00 -0.17 7.33 -2.39 -0.02 -0.19 16 40 H 0.00 0.24 6.67 -2.39 -0.02 0.22 16 Total: -1.00 -81.17 339.02 3.74 -77.43 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: 1.09 Total: 3.30 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 4.47 Total: 17.85 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -4.48 Total: -118.15 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.06 Total: -26.82 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.78 Total: -1.27 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.07 Total: -1.52 kcal Total: -81.17 3.74 -77.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076525497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.285 kcal (2) G-P(sol) polarization free energy of solvation -81.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds