Wall clock time and date at job start Tue Mar 31 2020 20:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 119.99865 * 2 1 4 4 H 1.48507 * 109.47125 * 273.36704 * 3 2 1 5 5 H 1.48499 * 109.47272 * 33.37067 * 3 2 1 6 6 H 1.48500 * 109.46903 * 153.37110 * 3 2 1 7 7 C 1.38814 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00197 * 348.13836 * 7 2 1 9 9 N 1.36935 * 119.99711 * 168.13600 * 7 2 1 10 10 C 1.46623 * 119.89413 * 328.91645 * 9 7 2 11 11 C 1.53106 * 108.05068 * 237.35306 * 10 9 7 12 12 C 1.53007 * 109.44631 * 300.99803 * 11 10 9 13 13 H 1.09004 * 113.42817 * 274.22773 * 12 11 10 14 14 C 1.54650 * 110.83636 * 143.88784 * 12 11 10 15 15 N 1.47805 * 85.79345 * 270.23048 * 14 12 11 16 16 C 1.34775 * 135.01577 * 153.83915 * 15 14 12 17 17 O 1.21568 * 120.00425 * 176.81957 * 16 15 14 18 18 C 1.47734 * 119.99903 * 356.82224 * 16 15 14 19 19 C 1.39657 * 120.11228 * 187.42453 * 18 16 15 20 20 C 1.37839 * 119.90485 * 180.02562 * 19 18 16 21 21 C 1.38644 * 120.12889 * 0.02562 * 20 19 18 22 22 F 1.35098 * 119.88341 * 179.97438 * 21 20 19 23 23 C 1.38736 * 120.23118 * 359.97438 * 21 20 19 24 24 Cl 1.73600 * 119.95124 * 180.02562 * 23 21 20 25 25 C 1.37964 * 120.09503 * 359.72311 * 23 21 20 26 26 C 1.46814 * 89.97267 * 333.80349 * 15 14 12 27 27 H 1.09002 * 111.56562 * 274.47702 * 26 15 14 28 28 C 1.45771 * 119.95662 * 148.97110 * 9 7 2 29 29 H 0.97002 * 120.00393 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.75550 * 117.69962 * 10 9 7 31 31 H 1.09000 * 109.75056 * 357.00419 * 10 9 7 32 32 H 1.09001 * 109.47459 * 60.98857 * 11 10 9 33 33 H 1.09000 * 109.47310 * 180.99650 * 11 10 9 34 34 H 1.08998 * 113.82113 * 24.44559 * 14 12 11 35 35 H 1.09000 * 113.82590 * 155.88916 * 14 12 11 36 36 H 1.08001 * 120.05455 * 0.02562 * 19 18 16 37 37 H 1.07996 * 119.93501 * 180.02562 * 20 19 18 38 38 H 1.07999 * 120.07405 * 180.29180 * 25 23 21 39 39 H 1.09005 * 108.70420 * 19.73194 * 28 9 7 40 40 H 1.09007 * 108.69752 * 261.73398 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4264 2.0875 -1.3977 5 1 1.4850 2.6310 0.7701 6 1 3.5815 1.4206 0.6275 7 6 2.0102 -1.2022 0.0005 8 1 1.4875 -2.1274 0.1932 9 7 3.3576 -1.2149 -0.2433 10 6 3.9497 -0.2067 -1.1280 11 6 4.6693 -0.9371 -2.2650 12 6 5.7456 -1.8543 -1.6807 13 1 6.6956 -1.3500 -1.5041 14 6 5.8577 -3.1618 -2.4990 15 7 4.8360 -3.6990 -1.5758 16 6 3.8924 -4.6582 -1.6521 17 8 3.2137 -4.9221 -0.6787 18 6 3.6828 -5.3891 -2.9188 19 6 2.6080 -6.2713 -3.0491 20 6 2.4168 -6.9514 -4.2326 21 6 3.2894 -6.7616 -5.2932 22 9 3.0976 -7.4311 -6.4508 23 6 4.3589 -5.8865 -5.1698 24 17 5.4466 -5.6539 -6.5026 25 6 4.5555 -5.1962 -3.9915 26 6 5.2758 -2.7550 -0.5409 27 1 6.1153 -3.1502 0.0311 28 6 4.1998 -2.2309 0.3759 29 1 -0.4851 0.8400 0.0004 30 1 4.6631 0.3997 -0.5700 31 1 3.1656 0.4303 -1.5373 32 1 3.9499 -1.5330 -2.8268 33 1 5.1341 -0.2079 -2.9286 34 1 5.5141 -3.0672 -3.5291 35 1 6.8285 -3.6506 -2.4170 36 1 1.9276 -6.4206 -2.2237 37 1 1.5856 -7.6334 -4.3341 38 1 5.3854 -4.5116 -3.8975 39 1 3.5701 -3.0641 0.6883 40 1 4.6719 -1.8022 1.2600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084619163.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:43 Heat of formation + Delta-G solvation = 27.160362 kcal Electronic energy + Delta-G solvation = -27463.427191 eV Core-core repulsion = 23414.536843 eV Total energy + Delta-G solvation = -4048.890348 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.29689 -41.03368 -39.35268 -37.66892 -36.73898 -35.67665 -32.23343 -31.51934 -31.20347 -30.96122 -28.97627 -27.42432 -24.31946 -24.18326 -23.35792 -22.86239 -21.37128 -20.48733 -18.53474 -17.85997 -17.42969 -16.91571 -16.75172 -16.10996 -15.89012 -15.51793 -15.42757 -15.17440 -14.39339 -14.13144 -13.97531 -13.77143 -13.62598 -13.53145 -13.11683 -12.92155 -12.89995 -12.57100 -12.25266 -11.99082 -11.74413 -11.72127 -11.43789 -11.35838 -11.16856 -10.94019 -10.80217 -10.28057 -9.93585 -9.68532 -9.41494 -9.39929 -9.38401 -9.01306 -8.72028 -8.42997 -6.89480 -5.87324 -3.30884 0.36436 0.70987 1.64243 2.63633 2.82858 3.30211 3.46461 3.49691 3.55242 3.67993 4.20294 4.26808 4.39934 4.53818 4.71354 4.75507 4.92682 4.93688 5.08220 5.14651 5.22920 5.26827 5.38869 5.47378 5.49974 5.58072 5.68069 5.73883 5.77310 5.90671 5.98989 6.11926 6.23052 6.27402 6.30623 6.51813 6.58400 6.76394 6.87942 7.85394 8.08166 8.32397 8.42542 9.01889 9.76880 10.10488 11.28829 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015568 B = 0.003616 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.146380 B = 7742.016876 C = 8158.692678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.020 3.980 3 Si 0.893 3.107 4 H -0.291 1.291 5 H -0.306 1.306 6 H -0.267 1.267 7 C -0.254 4.254 8 H 0.085 0.915 9 N -0.599 5.599 10 C 0.123 3.877 11 C -0.120 4.120 12 C -0.106 4.106 13 H 0.094 0.906 14 C 0.082 3.918 15 N -0.624 5.624 16 C 0.584 3.416 17 O -0.518 6.518 18 C -0.116 4.116 19 C -0.026 4.026 20 C -0.148 4.148 21 C 0.127 3.873 22 F -0.125 7.125 23 C -0.083 4.083 24 Cl -0.049 7.049 25 C -0.070 4.070 26 C 0.134 3.866 27 H 0.084 0.916 28 C 0.143 3.857 29 H 0.261 0.739 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.161 0.839 39 H 0.081 0.919 40 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.440 -11.148 -10.997 21.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.178 4.178 3 Si 0.725 3.275 4 H -0.219 1.219 5 H -0.235 1.235 6 H -0.192 1.192 7 C -0.383 4.383 8 H 0.103 0.897 9 N -0.322 5.322 10 C -0.002 4.002 11 C -0.160 4.160 12 C -0.125 4.125 13 H 0.112 0.888 14 C -0.041 4.041 15 N -0.360 5.360 16 C 0.374 3.626 17 O -0.394 6.394 18 C -0.120 4.120 19 C -0.045 4.045 20 C -0.167 4.167 21 C 0.106 3.894 22 F -0.103 7.103 23 C -0.111 4.111 24 Cl -0.020 7.020 25 C -0.089 4.089 26 C 0.031 3.969 27 H 0.102 0.898 28 C 0.017 3.983 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.173 0.827 37 H 0.170 0.830 38 H 0.178 0.822 39 H 0.099 0.901 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 13.844 -11.379 -10.603 20.822 hybrid contribution 0.487 0.786 -0.614 1.110 sum 14.331 -10.593 -11.217 21.057 Atomic orbital electron populations 1.69764 1.05657 1.26314 1.54234 1.25332 0.95304 0.97621 0.99514 0.86842 0.79823 0.84180 0.76610 1.21948 1.23509 1.19170 1.18967 0.81217 0.94204 1.43865 0.89707 1.43810 1.05090 1.31570 1.51742 1.21345 0.96274 0.91981 0.90611 1.21898 0.96763 0.98268 0.99047 1.22888 0.99718 0.94473 0.95435 0.88780 1.23872 0.91489 0.93153 0.95579 1.49639 1.32967 1.35212 1.18168 1.17439 0.79851 0.78185 0.87150 1.90820 1.46361 1.64815 1.37440 1.20083 0.97374 0.99983 0.94533 1.21331 0.95075 0.91019 0.97096 1.21142 1.00467 1.03055 0.92017 1.17655 0.95137 0.93403 0.83191 1.91550 1.94551 1.78023 1.46160 1.20841 0.95390 1.02561 0.92302 1.98390 1.62292 1.96178 1.45096 1.21857 1.00004 0.97153 0.89855 1.22410 0.96863 0.86062 0.91614 0.89811 1.20224 0.92244 0.93495 0.92352 0.92857 0.94952 0.90996 0.91404 0.92115 0.89496 0.89355 0.82687 0.82971 0.82244 0.90056 0.95413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.66 13.97 55.49 0.78 -27.88 16 2 C 0.02 0.60 5.36 -17.43 -0.09 0.50 16 3 Si 0.89 22.37 24.28 -169.99 -4.13 18.24 16 4 H -0.29 -7.01 6.73 56.52 0.38 -6.63 16 5 H -0.31 -7.89 7.11 56.52 0.40 -7.48 16 6 H -0.27 -6.37 6.00 56.52 0.34 -6.03 16 7 C -0.25 -7.26 10.01 -15.06 -0.15 -7.41 16 8 H 0.09 2.71 8.03 -52.48 -0.42 2.29 16 9 N -0.60 -14.12 2.78 -174.99 -0.49 -14.61 16 10 C 0.12 2.56 4.06 -3.92 -0.02 2.54 16 11 C -0.12 -1.92 5.66 -26.67 -0.15 -2.07 16 12 C -0.11 -1.35 4.39 -89.97 -0.40 -1.74 16 13 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 14 C 0.08 0.86 6.01 -3.01 -0.02 0.84 16 15 N -0.62 -9.33 3.34 -175.17 -0.59 -9.92 16 16 C 0.58 9.92 7.90 -12.38 -0.10 9.82 16 17 O -0.52 -10.80 15.55 5.31 0.08 -10.72 16 18 C -0.12 -1.60 5.87 -104.97 -0.62 -2.21 16 19 C -0.03 -0.33 9.59 -39.20 -0.38 -0.70 16 20 C -0.15 -1.55 10.01 -39.58 -0.40 -1.94 16 21 C 0.13 1.42 7.28 -39.25 -0.29 1.14 16 22 F -0.12 -1.41 16.83 2.25 0.04 -1.38 16 23 C -0.08 -0.93 6.32 -39.50 -0.25 -1.18 16 24 Cl -0.05 -0.49 28.60 -51.86 -1.48 -1.98 16 25 C -0.07 -0.81 8.94 -39.16 -0.35 -1.16 16 26 C 0.13 2.03 4.22 -69.60 -0.29 1.73 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 C 0.14 2.88 6.19 -5.55 -0.03 2.84 16 29 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.03 0.65 6.87 -51.93 -0.36 0.29 16 31 H 0.07 1.67 4.02 -51.93 -0.21 1.46 16 32 H 0.07 1.20 7.69 -51.93 -0.40 0.80 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.84 5.96 -51.93 -0.31 0.53 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.16 1.94 7.67 -52.49 -0.40 1.53 16 37 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.16 1.57 3.73 -52.49 -0.20 1.37 16 39 H 0.08 1.85 6.38 -51.93 -0.33 1.52 16 40 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 LS Contribution 334.44 15.07 5.04 5.04 Total: -1.00 -33.81 334.44 -8.65 -42.46 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -4.38 Total: -0.27 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -3.52 Total: 1.00 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.30 Total: -52.41 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.13 Total: 18.24 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.48 Total: -1.98 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.81 -8.65 -42.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084619163.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.625 kcal (2) G-P(sol) polarization free energy of solvation -33.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds