Wall clock time and date at job start Tue Mar 31 2020 20:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 119.99865 * 2 1 4 4 H 1.48507 * 109.47125 * 273.36704 * 3 2 1 5 5 H 1.48499 * 109.47272 * 33.37067 * 3 2 1 6 6 H 1.48500 * 109.46903 * 153.37110 * 3 2 1 7 7 C 1.38814 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00197 * 348.13836 * 7 2 1 9 9 N 1.36935 * 119.99711 * 168.13600 * 7 2 1 10 10 C 1.46623 * 119.89413 * 328.91645 * 9 7 2 11 11 C 1.53106 * 108.05068 * 237.35306 * 10 9 7 12 12 C 1.53007 * 109.44631 * 300.99803 * 11 10 9 13 13 H 1.09004 * 113.42817 * 274.22773 * 12 11 10 14 14 C 1.54650 * 110.83636 * 143.88784 * 12 11 10 15 15 N 1.47805 * 85.79345 * 270.23048 * 14 12 11 16 16 C 1.34775 * 135.01577 * 153.83915 * 15 14 12 17 17 O 1.21568 * 120.00425 * 176.81957 * 16 15 14 18 18 C 1.47734 * 119.99903 * 356.82224 * 16 15 14 19 19 C 1.39657 * 120.11228 * 187.42453 * 18 16 15 20 20 C 1.37839 * 119.90485 * 180.02562 * 19 18 16 21 21 C 1.38644 * 120.12889 * 0.02562 * 20 19 18 22 22 F 1.35098 * 119.88341 * 179.97438 * 21 20 19 23 23 C 1.38736 * 120.23118 * 359.97438 * 21 20 19 24 24 Cl 1.73600 * 119.95124 * 180.02562 * 23 21 20 25 25 C 1.37964 * 120.09503 * 359.72311 * 23 21 20 26 26 C 1.46814 * 89.97267 * 333.80349 * 15 14 12 27 27 H 1.09002 * 111.56562 * 274.47702 * 26 15 14 28 28 C 1.45771 * 119.95662 * 148.97110 * 9 7 2 29 29 H 0.97002 * 120.00393 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.75550 * 117.69962 * 10 9 7 31 31 H 1.09000 * 109.75056 * 357.00419 * 10 9 7 32 32 H 1.09001 * 109.47459 * 60.98857 * 11 10 9 33 33 H 1.09000 * 109.47310 * 180.99650 * 11 10 9 34 34 H 1.08998 * 113.82113 * 24.44559 * 14 12 11 35 35 H 1.09000 * 113.82590 * 155.88916 * 14 12 11 36 36 H 1.08001 * 120.05455 * 0.02562 * 19 18 16 37 37 H 1.07996 * 119.93501 * 180.02562 * 20 19 18 38 38 H 1.07999 * 120.07405 * 180.29180 * 25 23 21 39 39 H 1.09005 * 108.70420 * 19.73194 * 28 9 7 40 40 H 1.09007 * 108.69752 * 261.73398 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4264 2.0875 -1.3977 5 1 1.4850 2.6310 0.7701 6 1 3.5815 1.4206 0.6275 7 6 2.0102 -1.2022 0.0005 8 1 1.4875 -2.1274 0.1932 9 7 3.3576 -1.2149 -0.2433 10 6 3.9497 -0.2067 -1.1280 11 6 4.6693 -0.9371 -2.2650 12 6 5.7456 -1.8543 -1.6807 13 1 6.6956 -1.3500 -1.5041 14 6 5.8577 -3.1618 -2.4990 15 7 4.8360 -3.6990 -1.5758 16 6 3.8924 -4.6582 -1.6521 17 8 3.2137 -4.9221 -0.6787 18 6 3.6828 -5.3891 -2.9188 19 6 2.6080 -6.2713 -3.0491 20 6 2.4168 -6.9514 -4.2326 21 6 3.2894 -6.7616 -5.2932 22 9 3.0976 -7.4311 -6.4508 23 6 4.3589 -5.8865 -5.1698 24 17 5.4466 -5.6539 -6.5026 25 6 4.5555 -5.1962 -3.9915 26 6 5.2758 -2.7550 -0.5409 27 1 6.1153 -3.1502 0.0311 28 6 4.1998 -2.2309 0.3759 29 1 -0.4851 0.8400 0.0004 30 1 4.6631 0.3997 -0.5700 31 1 3.1656 0.4303 -1.5373 32 1 3.9499 -1.5330 -2.8268 33 1 5.1341 -0.2079 -2.9286 34 1 5.5141 -3.0672 -3.5291 35 1 6.8285 -3.6506 -2.4170 36 1 1.9276 -6.4206 -2.2237 37 1 1.5856 -7.6334 -4.3341 38 1 5.3854 -4.5116 -3.8975 39 1 3.5701 -3.0641 0.6883 40 1 4.6719 -1.8022 1.2600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084619163.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:42 Heat of formation + Delta-G solvation = 4.326589 kcal Electronic energy + Delta-G solvation = -27464.417338 eV Core-core repulsion = 23414.536843 eV Total energy + Delta-G solvation = -4049.880495 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.19768 -42.17688 -40.39013 -38.89417 -37.62576 -37.35025 -34.03055 -32.84122 -32.62675 -31.94880 -30.28030 -28.86944 -25.69620 -25.55657 -24.57949 -23.98595 -22.84005 -21.65144 -19.72726 -19.05977 -18.74282 -18.24308 -17.91280 -17.32607 -17.15014 -16.95995 -16.72215 -16.27351 -15.64303 -15.44297 -15.24915 -15.11445 -14.95254 -14.62736 -14.45599 -14.10700 -14.01856 -13.97568 -13.85806 -13.52925 -12.88826 -12.71884 -12.66658 -12.63154 -12.55924 -12.24838 -12.13824 -12.06282 -11.48268 -11.34473 -11.24181 -10.77328 -10.69849 -10.28286 -9.99719 -9.61456 -8.84730 -8.14619 -5.54934 -0.61600 -0.18317 0.77434 1.29197 1.42448 1.52705 1.57011 1.74586 2.41660 2.47579 2.77456 3.10767 3.19452 3.29916 3.34575 3.44092 3.78143 3.81645 3.91393 4.04535 4.19492 4.27584 4.29851 4.43432 4.48500 4.52359 4.56003 4.60910 4.68287 4.79282 4.80810 4.85896 4.94602 5.03733 5.09813 5.19424 5.24274 5.37480 5.54320 5.90944 6.12979 6.71451 6.96784 7.09845 7.65078 7.98226 9.06277 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015568 B = 0.003616 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.146380 B = 7742.016876 C = 8158.692678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.045 4.045 3 Si 0.973 3.027 4 H -0.272 1.272 5 H -0.318 1.318 6 H -0.242 1.242 7 C -0.246 4.246 8 H 0.023 0.977 9 N -0.612 5.612 10 C 0.113 3.887 11 C -0.115 4.115 12 C -0.095 4.095 13 H 0.144 0.856 14 C 0.091 3.909 15 N -0.633 5.633 16 C 0.571 3.429 17 O -0.580 6.580 18 C -0.135 4.135 19 C -0.040 4.040 20 C -0.137 4.137 21 C 0.126 3.874 22 F -0.123 7.123 23 C -0.085 4.085 24 Cl -0.033 7.033 25 C -0.058 4.058 26 C 0.123 3.877 27 H 0.123 0.877 28 C 0.141 3.859 29 H 0.261 0.739 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.178 0.822 38 H 0.181 0.819 39 H 0.036 0.964 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.168 -10.150 -13.452 25.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.239 4.239 3 Si 0.801 3.199 4 H -0.198 1.198 5 H -0.247 1.247 6 H -0.166 1.166 7 C -0.376 4.376 8 H 0.041 0.959 9 N -0.337 5.337 10 C -0.011 4.011 11 C -0.154 4.154 12 C -0.114 4.114 13 H 0.162 0.838 14 C -0.029 4.029 15 N -0.366 5.366 16 C 0.362 3.638 17 O -0.462 6.462 18 C -0.138 4.138 19 C -0.059 4.059 20 C -0.156 4.156 21 C 0.105 3.895 22 F -0.101 7.101 23 C -0.112 4.112 24 Cl -0.004 7.004 25 C -0.076 4.076 26 C 0.020 3.980 27 H 0.140 0.860 28 C 0.015 3.985 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.195 0.805 38 H 0.198 0.802 39 H 0.054 0.946 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 18.669 -10.384 -13.108 25.063 hybrid contribution -1.030 0.363 0.130 1.100 sum 17.639 -10.021 -12.978 24.082 Atomic orbital electron populations 1.69961 1.07919 1.27279 1.56661 1.26164 0.96087 1.01947 0.99665 0.85574 0.78849 0.77948 0.77482 1.19840 1.24732 1.16591 1.18695 0.83863 0.92054 1.42962 0.95936 1.43863 1.03432 1.33187 1.53179 1.21480 0.96069 0.91638 0.91887 1.21811 0.97047 0.99062 0.97496 1.22886 1.00195 0.94571 0.93713 0.83807 1.24205 0.92092 0.91372 0.95203 1.49889 1.33138 1.34038 1.19571 1.18013 0.79696 0.78553 0.87533 1.90784 1.48756 1.66983 1.39647 1.19961 0.98893 1.00846 0.94139 1.21341 0.95111 0.91742 0.97710 1.21296 1.00860 1.02566 0.90835 1.17764 0.95207 0.93303 0.83207 1.91557 1.94543 1.77985 1.46050 1.20896 0.95522 1.02200 0.92621 1.98398 1.61710 1.96086 1.44237 1.21906 0.99752 0.97037 0.88912 1.22590 0.95788 0.87437 0.92230 0.85984 1.20275 0.92556 0.91373 0.94266 0.93030 0.92780 0.93769 0.94147 0.88066 0.88258 0.84537 0.84025 0.80481 0.80210 0.94571 0.94429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.40 13.97 21.65 0.30 -64.10 16 2 C -0.05 -2.77 5.36 84.86 0.45 -2.32 16 3 Si 0.97 47.07 24.28 68.60 1.67 48.73 16 4 H -0.27 -12.17 6.73 99.48 0.67 -11.50 16 5 H -0.32 -15.82 7.11 99.48 0.71 -15.11 16 6 H -0.24 -10.61 6.00 99.48 0.60 -10.01 16 7 C -0.25 -14.98 10.01 84.03 0.84 -14.14 16 8 H 0.02 1.62 8.03 -2.91 -0.02 1.60 16 9 N -0.61 -29.34 2.78 -707.53 -1.97 -31.31 16 10 C 0.11 4.44 4.06 86.39 0.35 4.79 16 11 C -0.12 -3.22 5.66 30.63 0.17 -3.04 16 12 C -0.09 -1.89 4.39 -10.32 -0.05 -1.93 16 13 H 0.14 1.64 8.14 -2.38 -0.02 1.62 16 14 C 0.09 1.45 6.01 86.33 0.52 1.96 16 15 N -0.63 -17.88 3.34 -826.38 -2.76 -20.65 16 16 C 0.57 20.06 7.90 86.75 0.69 20.75 16 17 O -0.58 -26.50 15.55 -3.93 -0.06 -26.56 16 18 C -0.13 -3.74 5.87 -20.09 -0.12 -3.86 16 19 C -0.04 -1.04 9.59 22.52 0.22 -0.82 16 20 C -0.14 -2.78 10.01 22.27 0.22 -2.55 16 21 C 0.13 2.61 7.28 22.49 0.16 2.77 16 22 F -0.12 -2.54 16.83 44.97 0.76 -1.78 16 23 C -0.08 -1.70 6.32 22.32 0.14 -1.56 16 24 Cl -0.03 -0.58 28.60 -2.72 -0.08 -0.65 16 25 C -0.06 -1.20 8.94 22.54 0.20 -1.00 16 26 C 0.12 3.40 4.22 43.74 0.18 3.58 16 27 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 28 C 0.14 5.74 6.19 85.79 0.53 6.27 16 29 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 30 H 0.05 1.91 6.87 -2.39 -0.02 1.89 16 31 H 0.04 1.98 4.02 -2.39 -0.01 1.97 16 32 H 0.04 1.35 7.69 -2.39 -0.02 1.33 16 33 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.10 1.39 5.96 -2.39 -0.01 1.37 16 35 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.14 3.99 7.67 -2.91 -0.02 3.97 16 37 H 0.18 2.58 8.06 -2.91 -0.02 2.55 16 38 H 0.18 2.82 3.73 -2.91 -0.01 2.81 16 39 H 0.04 1.78 6.38 -2.38 -0.02 1.77 16 40 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -84.03 334.44 3.33 -80.70 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: 0.95 Total: 6.72 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 4.52 Total: 8.90 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -4.43 Total: -116.05 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.06 Total: -26.56 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.76 Total: -1.78 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.67 Total: 48.73 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.65 kcal Total: -84.03 3.33 -80.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084619163.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.024 kcal (2) G-P(sol) polarization free energy of solvation -84.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds