Wall clock time and date at job start Tue Mar 31 2020 20:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99786 * 2 1 4 4 H 1.48503 * 109.46762 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47569 * 299.99663 * 3 2 1 6 6 H 1.48499 * 109.47325 * 60.00345 * 3 2 1 7 7 C 1.38808 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99765 * 193.26349 * 7 2 1 9 9 N 1.36934 * 120.00092 * 13.26017 * 7 2 1 10 10 C 1.46619 * 119.89173 * 198.25067 * 9 7 2 11 11 C 1.53110 * 108.05117 * 237.35356 * 10 9 7 12 12 C 1.53010 * 109.44328 * 300.99986 * 11 10 9 13 13 H 1.09004 * 113.42239 * 274.22446 * 12 11 10 14 14 C 1.54649 * 110.83340 * 143.88752 * 12 11 10 15 15 N 1.47802 * 85.79242 * 270.22638 * 14 12 11 16 16 C 1.34785 * 135.01144 * 153.84039 * 15 14 12 17 17 O 1.21569 * 119.99512 * 180.02562 * 16 15 14 18 18 C 1.47696 * 119.99985 * 0.04207 * 16 15 14 19 19 C 1.39670 * 120.15971 * 7.37785 * 18 16 15 20 20 C 1.37851 * 119.89914 * 179.76056 * 19 18 16 21 21 C 1.38450 * 120.23384 * 0.53454 * 20 19 18 22 22 C 1.38305 * 120.32402 * 359.70025 * 21 20 19 23 23 Cl 1.73595 * 119.95407 * 180.02562 * 22 21 20 24 24 C 1.38443 * 120.09057 * 0.03608 * 22 21 20 25 25 F 1.35100 * 120.11048 * 180.02562 * 24 22 21 26 26 C 1.46816 * 89.97561 * 333.80766 * 15 14 12 27 27 H 1.08996 * 111.56032 * 274.48005 * 26 15 14 28 28 C 1.45775 * 119.95622 * 18.30263 * 9 7 2 29 29 H 0.96997 * 119.99642 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.75835 * 117.70044 * 10 9 7 31 31 H 1.09000 * 109.75196 * 357.00263 * 10 9 7 32 32 H 1.08999 * 109.47600 * 60.98965 * 11 10 9 33 33 H 1.08997 * 109.47455 * 181.00006 * 11 10 9 34 34 H 1.08998 * 113.82738 * 24.44755 * 14 12 11 35 35 H 1.09005 * 113.82231 * 155.88698 * 14 12 11 36 36 H 1.08003 * 120.04855 * 0.02562 * 19 18 16 37 37 H 1.08001 * 119.88370 * 180.23134 * 20 19 18 38 38 H 1.08000 * 119.84135 * 179.71683 * 21 20 19 39 39 H 1.09001 * 108.70297 * 19.73547 * 28 9 7 40 40 H 1.08998 * 108.69665 * 261.73269 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0686 -1.2145 0.2151 9 7 1.3529 -2.3723 -0.2709 10 6 1.9546 -3.6538 0.1104 11 6 2.0886 -4.5095 -1.1522 12 6 0.7069 -4.7162 -1.7763 13 1 0.1620 -5.5600 -1.3529 14 6 0.7961 -4.7219 -3.3202 15 7 0.5853 -3.2618 -3.2292 16 6 0.9051 -2.2027 -3.9990 17 8 0.5874 -1.0815 -3.6526 18 6 1.6413 -2.4042 -5.2635 19 6 1.8730 -3.6956 -5.7423 20 6 2.5563 -3.8774 -6.9257 21 6 3.0236 -2.7846 -7.6358 22 6 2.8037 -1.5018 -7.1679 23 17 3.3932 -0.1385 -8.0664 24 6 2.1142 -1.3036 -5.9838 25 9 1.8988 -0.0507 -5.5267 26 6 -0.1176 -3.4435 -1.9531 27 1 -1.1735 -3.6667 -2.1057 28 6 0.0577 -2.3416 -0.9391 29 1 -0.4849 0.8401 -0.0004 30 1 1.3150 -4.1607 0.8328 31 1 2.9392 -3.4834 0.5460 32 1 2.7381 -4.0038 -1.8667 33 1 2.5182 -5.4768 -0.8918 34 1 1.7772 -5.0020 -3.7036 35 1 -0.0198 -5.2569 -3.8064 36 1 1.5136 -4.5504 -5.1885 37 1 2.7321 -4.8760 -7.2976 38 1 3.5622 -2.9345 -8.5599 39 1 -0.0528 -1.3815 -1.4433 40 1 -0.7258 -2.4307 -0.1867 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084627310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:26 Heat of formation + Delta-G solvation = 27.456790 kcal Electronic energy + Delta-G solvation = -28058.336026 eV Core-core repulsion = 24009.458532 eV Total energy + Delta-G solvation = -4048.877494 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.78696 -40.67687 -39.13059 -37.44156 -36.62086 -35.25092 -32.28185 -31.58307 -30.64424 -30.09600 -28.72143 -27.07100 -24.31998 -23.97663 -23.20823 -22.34372 -21.09586 -20.14185 -18.25505 -17.54739 -17.26818 -16.67713 -16.29824 -15.94426 -15.55903 -15.38615 -15.16305 -14.76170 -14.21376 -13.72621 -13.52940 -13.41115 -13.37862 -13.14187 -13.03892 -12.66635 -12.58751 -12.25983 -11.95247 -11.74897 -11.67126 -11.48010 -11.21438 -11.00372 -10.66549 -10.60608 -10.48238 -10.16229 -9.82952 -9.73878 -9.65616 -9.19908 -9.03206 -8.88340 -8.24852 -8.15066 -6.65580 -5.59812 -2.99216 0.52150 0.78102 1.78022 2.86409 3.11373 3.51209 3.58282 3.61847 3.73169 3.92582 4.35459 4.47693 4.60622 4.64249 4.71718 4.83523 5.09537 5.15101 5.30367 5.44777 5.47593 5.56978 5.61281 5.62464 5.67370 5.81338 5.84733 5.92318 6.09733 6.11644 6.27716 6.35734 6.42125 6.52774 6.57288 6.75726 6.97363 7.53614 7.81765 8.02467 8.20604 8.60690 8.67911 9.38739 10.03427 10.47308 11.46404 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.005068 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.186345 B = 5523.621394 C = 7296.555155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.007 3.993 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.292 1.292 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.147 3.853 11 C -0.118 4.118 12 C -0.109 4.109 13 H 0.088 0.912 14 C 0.082 3.918 15 N -0.623 5.623 16 C 0.572 3.428 17 O -0.493 6.493 18 C -0.144 4.144 19 C -0.072 4.072 20 C -0.130 4.130 21 C -0.066 4.066 22 C -0.088 4.088 23 Cl -0.048 7.048 24 C 0.167 3.833 25 F -0.098 7.098 26 C 0.128 3.872 27 H 0.075 0.925 28 C 0.154 3.846 29 H 0.251 0.749 30 H 0.020 0.980 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.128 0.872 40 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.720 -14.100 -15.218 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.191 4.191 3 Si 0.732 3.268 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.219 1.219 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.020 3.980 11 C -0.158 4.158 12 C -0.128 4.128 13 H 0.107 0.893 14 C -0.041 4.041 15 N -0.360 5.360 16 C 0.360 3.640 17 O -0.367 6.367 18 C -0.148 4.148 19 C -0.090 4.090 20 C -0.149 4.149 21 C -0.085 4.085 22 C -0.116 4.116 23 Cl -0.019 7.019 24 C 0.145 3.855 25 F -0.076 7.076 26 C 0.025 3.975 27 H 0.092 0.908 28 C 0.028 3.972 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.171 0.829 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.145 0.855 40 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.526 -12.931 -15.188 20.257 hybrid contribution 0.453 1.125 -0.287 1.246 sum 3.979 -11.807 -15.475 19.868 Atomic orbital electron populations 1.69968 1.05093 1.25028 1.54966 1.24799 0.95363 0.97954 1.00952 0.86237 0.79010 0.84411 0.77176 1.20601 1.21385 1.21920 1.19202 0.91697 0.84408 1.42576 0.91556 1.43573 1.20626 1.00811 1.66014 1.20722 0.97128 0.87480 0.92628 1.21878 0.94099 0.99442 1.00367 1.22879 0.98518 0.97858 0.93531 0.89342 1.23799 1.00923 0.81575 0.97776 1.49665 1.57619 1.05123 1.23555 1.17330 0.80418 0.84189 0.82082 1.90954 1.52856 1.21972 1.70868 1.20297 1.03826 0.92824 0.97854 1.21986 0.95307 0.96358 0.95393 1.21108 0.99508 0.99087 0.95177 1.21105 0.97865 0.89480 1.00085 1.20920 1.04940 0.90791 0.94902 1.98389 1.86842 1.43173 1.73503 1.17464 0.95999 0.80598 0.91397 1.91675 1.91737 1.36293 1.87882 1.22746 0.94832 0.96097 0.83853 0.90765 1.20432 0.86805 0.98185 0.91801 0.93816 0.96179 0.92605 0.92093 0.92644 0.90025 0.89938 0.82870 0.83949 0.83773 0.85463 0.95457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 10.44 55.49 0.58 -27.22 16 2 C 0.01 0.21 5.06 -17.43 -0.09 0.12 16 3 Si 0.90 23.92 29.57 -169.99 -5.03 18.90 16 4 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.91 7.11 56.52 0.40 -7.51 16 6 H -0.29 -7.62 7.11 56.52 0.40 -7.21 16 7 C -0.25 -7.19 9.66 -15.06 -0.15 -7.34 16 8 H 0.07 1.88 7.77 -52.49 -0.41 1.47 16 9 N -0.59 -14.98 3.04 -175.00 -0.53 -15.52 16 10 C 0.15 2.98 6.47 -3.92 -0.03 2.95 16 11 C -0.12 -1.89 5.66 -26.67 -0.15 -2.04 16 12 C -0.11 -1.56 4.39 -89.98 -0.40 -1.95 16 13 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 14 C 0.08 0.98 5.82 -3.01 -0.02 0.96 16 15 N -0.62 -11.09 3.34 -175.20 -0.58 -11.67 16 16 C 0.57 11.78 7.92 -12.39 -0.10 11.68 16 17 O -0.49 -12.87 14.49 5.30 0.08 -12.79 16 18 C -0.14 -2.35 5.88 -104.92 -0.62 -2.96 16 19 C -0.07 -0.82 9.12 -39.19 -0.36 -1.18 16 20 C -0.13 -1.13 10.03 -39.65 -0.40 -1.53 16 21 C -0.07 -0.64 9.82 -39.48 -0.39 -1.03 16 22 C -0.09 -1.16 6.32 -39.48 -0.25 -1.41 16 23 Cl -0.05 -0.61 28.61 -51.86 -1.48 -2.09 16 24 C 0.17 2.82 7.25 -38.93 -0.28 2.54 16 25 F -0.10 -2.02 15.15 2.25 0.03 -1.99 16 26 C 0.13 2.40 4.23 -69.60 -0.29 2.11 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 C 0.15 3.82 4.67 -5.55 -0.03 3.79 16 29 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 1.12 7.84 -51.93 -0.41 0.71 16 32 H 0.06 1.08 7.69 -51.93 -0.40 0.68 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.82 6.23 -51.93 -0.32 0.50 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.15 1.41 3.91 -52.48 -0.21 1.20 16 37 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.13 3.75 4.26 -51.93 -0.22 3.53 16 40 H 0.03 0.73 8.08 -51.93 -0.42 0.31 16 LS Contribution 339.17 15.07 5.11 5.11 Total: -1.00 -35.78 339.17 -9.84 -45.62 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -4.48 Total: -3.07 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -3.53 Total: 4.72 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.54 Total: -54.41 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.08 Total: -12.79 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.03 Total: -1.99 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.03 Total: 18.90 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.48 Total: -2.09 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.78 -9.84 -45.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084627310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.072 kcal (2) G-P(sol) polarization free energy of solvation -35.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds