Wall clock time and date at job start Tue Mar 31 2020 20:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99786 * 2 1 4 4 H 1.48503 * 109.46762 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47569 * 299.99663 * 3 2 1 6 6 H 1.48499 * 109.47325 * 60.00345 * 3 2 1 7 7 C 1.38808 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99765 * 193.26349 * 7 2 1 9 9 N 1.36934 * 120.00092 * 13.26017 * 7 2 1 10 10 C 1.46619 * 119.89173 * 198.25067 * 9 7 2 11 11 C 1.53110 * 108.05117 * 237.35356 * 10 9 7 12 12 C 1.53010 * 109.44328 * 300.99986 * 11 10 9 13 13 H 1.09004 * 113.42239 * 274.22446 * 12 11 10 14 14 C 1.54649 * 110.83340 * 143.88752 * 12 11 10 15 15 N 1.47802 * 85.79242 * 270.22638 * 14 12 11 16 16 C 1.34785 * 135.01144 * 153.84039 * 15 14 12 17 17 O 1.21569 * 119.99512 * 180.02562 * 16 15 14 18 18 C 1.47696 * 119.99985 * 0.04207 * 16 15 14 19 19 C 1.39670 * 120.15971 * 7.37785 * 18 16 15 20 20 C 1.37851 * 119.89914 * 179.76056 * 19 18 16 21 21 C 1.38450 * 120.23384 * 0.53454 * 20 19 18 22 22 C 1.38305 * 120.32402 * 359.70025 * 21 20 19 23 23 Cl 1.73595 * 119.95407 * 180.02562 * 22 21 20 24 24 C 1.38443 * 120.09057 * 0.03608 * 22 21 20 25 25 F 1.35100 * 120.11048 * 180.02562 * 24 22 21 26 26 C 1.46816 * 89.97561 * 333.80766 * 15 14 12 27 27 H 1.08996 * 111.56032 * 274.48005 * 26 15 14 28 28 C 1.45775 * 119.95622 * 18.30263 * 9 7 2 29 29 H 0.96997 * 119.99642 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.75835 * 117.70044 * 10 9 7 31 31 H 1.09000 * 109.75196 * 357.00263 * 10 9 7 32 32 H 1.08999 * 109.47600 * 60.98965 * 11 10 9 33 33 H 1.08997 * 109.47455 * 181.00006 * 11 10 9 34 34 H 1.08998 * 113.82738 * 24.44755 * 14 12 11 35 35 H 1.09005 * 113.82231 * 155.88698 * 14 12 11 36 36 H 1.08003 * 120.04855 * 0.02562 * 19 18 16 37 37 H 1.08001 * 119.88370 * 180.23134 * 20 19 18 38 38 H 1.08000 * 119.84135 * 179.71683 * 21 20 19 39 39 H 1.09001 * 108.70297 * 19.73547 * 28 9 7 40 40 H 1.08998 * 108.69665 * 261.73269 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0686 -1.2145 0.2151 9 7 1.3529 -2.3723 -0.2709 10 6 1.9546 -3.6538 0.1104 11 6 2.0886 -4.5095 -1.1522 12 6 0.7069 -4.7162 -1.7763 13 1 0.1620 -5.5600 -1.3529 14 6 0.7961 -4.7219 -3.3202 15 7 0.5853 -3.2618 -3.2292 16 6 0.9051 -2.2027 -3.9990 17 8 0.5874 -1.0815 -3.6526 18 6 1.6413 -2.4042 -5.2635 19 6 1.8730 -3.6956 -5.7423 20 6 2.5563 -3.8774 -6.9257 21 6 3.0236 -2.7846 -7.6358 22 6 2.8037 -1.5018 -7.1679 23 17 3.3932 -0.1385 -8.0664 24 6 2.1142 -1.3036 -5.9838 25 9 1.8988 -0.0507 -5.5267 26 6 -0.1176 -3.4435 -1.9531 27 1 -1.1735 -3.6667 -2.1057 28 6 0.0577 -2.3416 -0.9391 29 1 -0.4849 0.8401 -0.0004 30 1 1.3150 -4.1607 0.8328 31 1 2.9392 -3.4834 0.5460 32 1 2.7381 -4.0038 -1.8667 33 1 2.5182 -5.4768 -0.8918 34 1 1.7772 -5.0020 -3.7036 35 1 -0.0198 -5.2569 -3.8064 36 1 1.5136 -4.5504 -5.1885 37 1 2.7321 -4.8760 -7.2976 38 1 3.5622 -2.9345 -8.5599 39 1 -0.0528 -1.3815 -1.4433 40 1 -0.7258 -2.4307 -0.1867 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084627310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:25 Heat of formation + Delta-G solvation = 2.563002 kcal Electronic energy + Delta-G solvation = -28059.415501 eV Core-core repulsion = 24009.458532 eV Total energy + Delta-G solvation = -4049.956969 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.09416 -41.98993 -40.18057 -38.87124 -37.62724 -37.08186 -34.06576 -32.76488 -31.86227 -31.58492 -30.18675 -28.68039 -25.89021 -25.35505 -24.48258 -23.51704 -22.60445 -21.45475 -19.71733 -19.08077 -18.43395 -17.88958 -17.78618 -17.39705 -16.97817 -16.79771 -16.31487 -16.15428 -15.73018 -15.54348 -15.09265 -14.90224 -14.60866 -14.46145 -14.18532 -14.07978 -13.99171 -13.58438 -13.32266 -13.19214 -12.89558 -12.70454 -12.65945 -12.60442 -12.27750 -12.20770 -12.15254 -11.99207 -11.70951 -11.45846 -11.12726 -10.74762 -10.32536 -10.19926 -9.87348 -9.51424 -8.75197 -7.84404 -5.23810 -0.46109 -0.16588 0.82079 1.29698 1.38115 1.42512 1.78028 1.84516 2.45159 2.54005 2.92013 3.25194 3.30132 3.44134 3.67100 3.73733 3.79153 3.98013 4.05093 4.17201 4.30615 4.44716 4.51015 4.60400 4.70647 4.71307 4.72749 4.78635 4.87226 4.95343 4.99793 5.07584 5.09302 5.14931 5.33518 5.44785 5.53459 5.56668 5.73990 5.94139 6.42706 6.84836 7.17626 7.23859 7.97544 8.31875 9.17505 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.005068 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.186345 B = 5523.621394 C = 7296.555155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.051 4.051 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.310 1.310 6 H -0.282 1.282 7 C -0.249 4.249 8 H 0.066 0.934 9 N -0.606 5.606 10 C 0.136 3.864 11 C -0.107 4.107 12 C -0.097 4.097 13 H 0.133 0.867 14 C 0.096 3.904 15 N -0.628 5.628 16 C 0.556 3.444 17 O -0.576 6.576 18 C -0.170 4.170 19 C -0.060 4.060 20 C -0.100 4.100 21 C -0.050 4.050 22 C -0.094 4.094 23 Cl -0.053 7.053 24 C 0.117 3.883 25 F -0.139 7.139 26 C 0.110 3.890 27 H 0.092 0.908 28 C 0.163 3.837 29 H 0.240 0.760 30 H 0.031 0.969 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.183 0.817 37 H 0.202 0.798 38 H 0.185 0.815 39 H 0.076 0.924 40 H -0.010 1.010 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.593 -20.074 -17.801 27.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.245 4.245 3 Si 0.779 3.221 4 H -0.189 1.189 5 H -0.239 1.239 6 H -0.208 1.208 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.329 5.329 10 C 0.011 3.989 11 C -0.146 4.146 12 C -0.115 4.115 13 H 0.151 0.849 14 C -0.023 4.023 15 N -0.362 5.362 16 C 0.347 3.653 17 O -0.457 6.457 18 C -0.174 4.174 19 C -0.077 4.077 20 C -0.118 4.118 21 C -0.068 4.068 22 C -0.122 4.122 23 Cl -0.024 7.024 24 C 0.096 3.904 25 F -0.118 7.118 26 C 0.006 3.994 27 H 0.109 0.891 28 C 0.037 3.963 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.149 0.851 36 H 0.200 0.800 37 H 0.219 0.781 38 H 0.202 0.798 39 H 0.094 0.906 40 H 0.008 0.992 Dipole moment (debyes) X Y Z Total from point charges 5.437 -19.017 -17.765 26.585 hybrid contribution -0.090 2.843 0.503 2.889 sum 5.348 -16.174 -17.261 24.252 Atomic orbital electron populations 1.70176 1.06224 1.24533 1.56988 1.25458 0.96063 1.00688 1.02330 0.85447 0.78864 0.81461 0.76279 1.18945 1.23861 1.20835 1.19507 0.91830 0.86027 1.40545 0.91620 1.43819 1.20676 1.01832 1.66578 1.21019 0.96490 0.85929 0.95436 1.21766 0.95245 1.00403 0.97221 1.22883 0.96722 0.95993 0.95949 0.84912 1.24182 1.04567 0.77498 0.96095 1.49857 1.56396 1.07549 1.22443 1.18152 0.80044 0.83727 0.83408 1.90907 1.56291 1.25297 1.73156 1.20155 1.05526 0.95061 0.96666 1.22332 0.94632 0.94427 0.96351 1.21767 0.95949 1.01177 0.92901 1.21716 0.96284 0.87787 1.01007 1.21148 1.04830 0.92312 0.93878 1.98383 1.86757 1.44078 1.73164 1.18066 0.99101 0.79559 0.93714 1.91558 1.92575 1.38871 1.88753 1.22715 0.97173 0.96288 0.83230 0.89059 1.20010 0.85654 0.98668 0.91955 0.95002 0.95120 0.93125 0.94109 0.87621 0.86845 0.85127 0.80043 0.78081 0.79750 0.90642 0.99183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -61.90 10.44 21.65 0.23 -61.67 16 2 C -0.05 -3.23 5.06 84.86 0.43 -2.80 16 3 Si 0.95 52.33 29.57 68.60 2.03 54.36 16 4 H -0.27 -13.72 7.11 99.48 0.71 -13.01 16 5 H -0.31 -18.13 7.11 99.48 0.71 -17.42 16 6 H -0.28 -14.87 7.11 99.48 0.71 -14.16 16 7 C -0.25 -15.04 9.66 84.03 0.81 -14.23 16 8 H 0.07 3.87 7.77 -2.91 -0.02 3.85 16 9 N -0.61 -32.00 3.04 -707.56 -2.15 -34.16 16 10 C 0.14 5.37 6.47 86.39 0.56 5.92 16 11 C -0.11 -2.99 5.66 30.63 0.17 -2.82 16 12 C -0.10 -2.31 4.39 -10.32 -0.05 -2.36 16 13 H 0.13 2.16 8.14 -2.38 -0.02 2.14 16 14 C 0.10 1.72 5.82 86.34 0.50 2.23 16 15 N -0.63 -21.62 3.34 -826.47 -2.76 -24.38 16 16 C 0.56 23.87 7.92 86.74 0.69 24.55 16 17 O -0.58 -33.21 14.49 -3.93 -0.06 -33.26 16 18 C -0.17 -5.50 5.88 -20.06 -0.12 -5.62 16 19 C -0.06 -1.06 9.12 22.52 0.21 -0.85 16 20 C -0.10 -1.05 10.03 22.23 0.22 -0.82 16 21 C -0.05 -0.71 9.82 22.34 0.22 -0.49 16 22 C -0.09 -2.38 6.32 22.33 0.14 -2.24 16 23 Cl -0.05 -1.32 28.61 -2.72 -0.08 -1.40 16 24 C 0.12 4.11 7.25 22.69 0.16 4.27 16 25 F -0.14 -6.38 15.15 44.97 0.68 -5.70 16 26 C 0.11 4.06 4.23 43.74 0.18 4.25 16 27 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 28 C 0.16 8.60 4.67 85.79 0.40 9.00 16 29 H 0.24 15.81 8.31 -92.71 -0.77 15.03 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 2.00 7.84 -2.39 -0.02 1.98 16 32 H 0.04 1.31 7.69 -2.39 -0.02 1.30 16 33 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.11 1.39 6.23 -2.39 -0.01 1.38 16 35 H 0.13 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.18 2.03 3.91 -2.91 -0.01 2.02 16 37 H 0.20 -0.06 8.06 -2.91 -0.02 -0.08 16 38 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 39 H 0.08 4.84 4.26 -2.39 -0.01 4.83 16 40 H -0.01 -0.55 8.08 -2.39 -0.02 -0.57 16 Total: -1.00 -95.94 339.17 3.52 -92.42 By element: Atomic # 1 Polarization: -5.29 SS G_CDS: 1.09 Total: -4.19 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 4.54 Total: 18.00 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -4.68 Total: -120.21 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.06 Total: -33.26 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.68 Total: -5.70 kcal Atomic # 14 Polarization: 52.33 SS G_CDS: 2.03 Total: 54.36 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -95.94 3.52 -92.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084627310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.980 kcal (2) G-P(sol) polarization free energy of solvation -95.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds