Wall clock time and date at job start Tue Mar 31 2020 20:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00078 * 2 1 4 4 H 1.48503 * 109.47103 * 270.00135 * 3 2 1 5 5 H 1.48510 * 109.46787 * 29.99833 * 3 2 1 6 6 H 1.48493 * 109.47018 * 149.99625 * 3 2 1 7 7 C 1.38814 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99995 * 195.77206 * 7 2 1 9 9 N 1.36935 * 119.99628 * 15.77338 * 7 2 1 10 10 C 1.46538 * 119.73549 * 205.68182 * 9 7 2 11 11 C 1.53150 * 108.25099 * 236.39815 * 10 9 7 12 12 C 1.53066 * 109.21742 * 301.59420 * 11 10 9 13 13 H 1.08996 * 113.84369 * 275.71715 * 12 11 10 14 14 C 1.54348 * 111.57472 * 142.37636 * 12 11 10 15 15 N 1.47288 * 87.50450 * 274.17210 * 14 12 11 16 16 C 1.34778 * 136.54385 * 151.48196 * 15 14 12 17 17 O 1.21544 * 120.00153 * 185.25770 * 16 15 14 18 18 C 1.47869 * 119.99658 * 4.97175 * 16 15 14 19 19 C 1.39560 * 120.12808 * 7.05236 * 18 16 15 20 20 C 1.38177 * 119.85377 * 179.97438 * 19 18 16 21 21 F 1.35098 * 119.94447 * 180.02562 * 20 19 18 22 22 C 1.38564 * 120.10508 * 0.02568 * 20 19 18 23 23 C 1.38413 * 120.25575 * 359.97147 * 22 20 19 24 24 Cl 1.73601 * 119.92311 * 179.97438 * 23 22 20 25 25 C 1.38105 * 120.14672 * 359.74746 * 23 22 20 26 26 C 1.46459 * 86.91281 * 331.21675 * 15 14 12 27 27 H 1.08996 * 111.44368 * 277.32112 * 26 15 14 28 28 C 1.45702 * 119.74111 * 25.66338 * 9 7 2 29 29 H 0.97000 * 120.00136 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.70634 * 356.08946 * 10 9 7 31 31 H 1.09002 * 109.70561 * 116.67250 * 10 9 7 32 32 H 1.09001 * 109.51572 * 61.51638 * 11 10 9 33 33 H 1.08999 * 109.51108 * 181.61812 * 11 10 9 34 34 H 1.08999 * 113.52129 * 159.53631 * 14 12 11 35 35 H 1.08997 * 113.62655 * 28.82328 * 14 12 11 36 36 H 1.08002 * 120.07288 * 0.02562 * 19 18 16 37 37 H 1.08002 * 119.86972 * 179.97438 * 22 20 19 38 38 H 1.08002 * 120.05521 * 180.26895 * 25 23 22 39 39 H 1.09004 * 108.78822 * 19.13067 * 28 9 7 40 40 H 1.09002 * 108.78952 * 260.91980 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0597 -1.2196 0.2548 9 7 1.3642 -2.3658 -0.3213 10 6 1.8659 -3.6423 0.1947 11 6 2.1385 -4.5669 -0.9955 12 6 0.8465 -4.7533 -1.7949 13 1 0.1949 -5.5344 -1.4033 14 6 1.1209 -4.8061 -3.3128 15 7 1.0533 -3.3348 -3.3110 16 6 1.5870 -2.3300 -4.0336 17 8 1.3949 -1.1759 -3.7042 18 6 2.4113 -2.6318 -5.2234 19 6 2.5184 -3.9438 -5.6870 20 6 3.2898 -4.2194 -6.7997 21 9 3.3943 -5.4888 -7.2503 22 6 3.9564 -3.1960 -7.4541 23 6 3.8533 -1.8932 -6.9982 24 17 4.6927 -0.6177 -7.8243 25 6 3.0805 -1.6050 -5.8905 26 6 0.1390 -3.4571 -2.1734 27 1 -0.8814 -3.6543 -2.5018 28 6 0.1833 -2.3250 -1.1737 29 1 -0.4850 0.8400 -0.0004 30 1 2.7887 -3.4769 0.7505 31 1 1.1192 -4.0936 0.8480 32 1 2.9012 -4.1223 -1.6348 33 1 2.4860 -5.5342 -0.6329 34 1 0.3209 -5.2777 -3.8834 35 1 2.1070 -5.1961 -3.5652 36 1 1.9987 -4.7419 -5.1776 37 1 4.5587 -3.4158 -8.3232 38 1 2.9976 -0.5873 -5.5387 39 1 0.1732 -1.3786 -1.7145 40 1 -0.7055 -2.3768 -0.5449 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084682069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:16 Heat of formation + Delta-G solvation = 21.866062 kcal Electronic energy + Delta-G solvation = -27597.830884 eV Core-core repulsion = 23548.710958 eV Total energy + Delta-G solvation = -4049.119926 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.23916 -40.86968 -39.32571 -37.50451 -36.61931 -35.28953 -32.31198 -31.63064 -30.70428 -30.17212 -28.84472 -27.07383 -24.43249 -23.91769 -23.26247 -22.43145 -21.15698 -20.25514 -18.46935 -17.60064 -17.09435 -16.57011 -16.39740 -16.02736 -15.82745 -15.77246 -15.32890 -14.78835 -14.31534 -13.88728 -13.84072 -13.64310 -13.40836 -13.29885 -13.22194 -12.70702 -12.52461 -12.18051 -11.98654 -11.90408 -11.60216 -11.44583 -11.32631 -11.11689 -10.68563 -10.65262 -10.50582 -10.19433 -9.91048 -9.79044 -9.66804 -9.28837 -9.10675 -9.02529 -8.31146 -8.25075 -6.59584 -5.65892 -3.07531 0.43039 0.71614 1.70449 2.72883 3.06347 3.49330 3.55023 3.58044 3.67144 3.83978 4.26804 4.43746 4.60843 4.64073 4.67942 4.80553 4.94584 5.09852 5.31875 5.37723 5.42321 5.45056 5.56387 5.59093 5.65221 5.72856 5.83390 5.87588 6.05660 6.08497 6.24640 6.35569 6.36576 6.46231 6.55332 6.76469 6.97557 7.44879 7.73907 7.93289 8.14684 8.54484 8.57649 9.35575 9.99789 10.47216 11.42588 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.011174 B = 0.004520 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.228458 B = 6193.574899 C = 8073.841551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.014 3.986 3 Si 0.899 3.101 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.253 4.253 8 H 0.062 0.938 9 N -0.584 5.584 10 C 0.148 3.852 11 C -0.117 4.117 12 C -0.111 4.111 13 H 0.095 0.905 14 C 0.084 3.916 15 N -0.625 5.625 16 C 0.580 3.420 17 O -0.496 6.496 18 C -0.072 4.072 19 C -0.131 4.131 20 C 0.105 3.895 21 F -0.131 7.131 22 C -0.132 4.132 23 C -0.015 4.015 24 Cl -0.052 7.052 25 C -0.064 4.064 26 C 0.120 3.880 27 H 0.076 0.924 28 C 0.167 3.833 29 H 0.252 0.748 30 H 0.056 0.944 31 H 0.020 0.980 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.155 0.845 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.102 0.898 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.621 -12.276 -14.118 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.185 4.185 3 Si 0.729 3.271 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.382 4.382 8 H 0.080 0.920 9 N -0.306 5.306 10 C 0.022 3.978 11 C -0.156 4.156 12 C -0.130 4.130 13 H 0.113 0.887 14 C -0.039 4.039 15 N -0.361 5.361 16 C 0.368 3.632 17 O -0.370 6.370 18 C -0.076 4.076 19 C -0.151 4.151 20 C 0.085 3.915 21 F -0.110 7.110 22 C -0.152 4.152 23 C -0.042 4.042 24 Cl -0.022 7.022 25 C -0.084 4.084 26 C 0.017 3.983 27 H 0.094 0.906 28 C 0.041 3.959 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.173 0.827 37 H 0.166 0.834 38 H 0.173 0.827 39 H 0.120 0.880 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.567 -11.214 -14.136 18.612 hybrid contribution 0.520 0.625 -0.479 0.943 sum 5.087 -10.589 -14.614 18.751 Atomic orbital electron populations 1.70010 1.05233 1.25304 1.54271 1.24897 0.95197 0.98111 1.00312 0.86351 0.78953 0.84003 0.77784 1.21224 1.21914 1.20697 1.19069 0.92030 0.84740 1.42346 0.92045 1.43439 1.31908 1.01545 1.53695 1.20723 0.97483 0.87189 0.92443 1.21855 0.95018 0.99470 0.99272 1.22820 0.98987 0.97827 0.93405 0.88705 1.23587 1.01350 0.81462 0.97494 1.49287 1.47712 1.05729 1.33350 1.17288 0.80244 0.84250 0.81445 1.90917 1.59248 1.18763 1.68062 1.19931 0.98674 0.92403 0.96605 1.21920 0.99300 0.98023 0.95811 1.17249 0.99811 0.79215 0.95215 1.91537 1.94776 1.36148 1.88508 1.21083 1.01612 0.90612 1.01846 1.20448 0.98589 0.89348 0.95820 1.98396 1.76346 1.49917 1.77584 1.21300 0.93364 1.01337 0.92393 1.22736 0.92114 0.97093 0.86393 0.90590 1.20183 0.89433 0.96151 0.90145 0.93820 0.92560 0.96226 0.92115 0.92561 0.89937 0.90473 0.82738 0.83384 0.82667 0.88041 0.95056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 11.05 55.49 0.61 -26.49 16 2 C 0.01 0.39 4.91 -17.43 -0.09 0.31 16 3 Si 0.90 23.21 29.58 -169.99 -5.03 18.18 16 4 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.25 -7.14 9.51 -15.06 -0.14 -7.28 16 8 H 0.06 1.73 7.84 -52.49 -0.41 1.32 16 9 N -0.58 -14.58 3.02 -174.89 -0.53 -15.11 16 10 C 0.15 2.98 6.46 -3.94 -0.03 2.96 16 11 C -0.12 -1.85 5.71 -26.62 -0.15 -2.00 16 12 C -0.11 -1.57 4.57 -90.16 -0.41 -1.98 16 13 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 14 C 0.08 1.02 5.55 -11.41 -0.06 0.95 16 15 N -0.62 -10.65 3.30 -188.68 -0.62 -11.27 16 16 C 0.58 11.04 7.96 -12.32 -0.10 10.94 16 17 O -0.50 -11.93 15.53 5.33 0.08 -11.84 16 18 C -0.07 -1.09 5.87 -104.98 -0.62 -1.70 16 19 C -0.13 -1.59 9.13 -39.11 -0.36 -1.94 16 20 C 0.10 1.16 7.29 -39.48 -0.29 0.87 16 21 F -0.13 -1.40 17.26 2.25 0.04 -1.36 16 22 C -0.13 -1.37 9.80 -39.40 -0.39 -1.76 16 23 C -0.02 -0.18 6.31 -39.57 -0.25 -0.43 16 24 Cl -0.05 -0.56 28.95 -51.86 -1.50 -2.06 16 25 C -0.06 -0.92 9.37 -39.15 -0.37 -1.28 16 26 C 0.12 2.16 4.03 -77.69 -0.31 1.85 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 C 0.17 4.02 4.56 -5.43 -0.02 3.99 16 29 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.06 1.13 7.87 -51.93 -0.41 0.72 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 1.07 7.69 -51.93 -0.40 0.67 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.82 6.61 -51.93 -0.34 0.48 16 36 H 0.16 1.63 4.21 -52.49 -0.22 1.41 16 37 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.16 2.38 7.66 -52.49 -0.40 1.98 16 39 H 0.10 2.88 5.01 -51.93 -0.26 2.62 16 40 H 0.03 0.81 7.99 -51.93 -0.41 0.40 16 LS Contribution 343.04 15.07 5.17 5.17 Total: -1.00 -32.83 343.04 -9.89 -42.72 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -4.53 Total: -1.40 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -3.58 Total: 3.48 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.54 Total: -52.87 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.03 Total: 18.18 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.83 -9.89 -42.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084682069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.587 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds