Wall clock time and date at job start Tue Mar 31 2020 20:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00078 * 2 1 4 4 H 1.48503 * 109.47103 * 270.00135 * 3 2 1 5 5 H 1.48510 * 109.46787 * 29.99833 * 3 2 1 6 6 H 1.48493 * 109.47018 * 149.99625 * 3 2 1 7 7 C 1.38814 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99995 * 195.77206 * 7 2 1 9 9 N 1.36935 * 119.99628 * 15.77338 * 7 2 1 10 10 C 1.46538 * 119.73549 * 205.68182 * 9 7 2 11 11 C 1.53150 * 108.25099 * 236.39815 * 10 9 7 12 12 C 1.53066 * 109.21742 * 301.59420 * 11 10 9 13 13 H 1.08996 * 113.84369 * 275.71715 * 12 11 10 14 14 C 1.54348 * 111.57472 * 142.37636 * 12 11 10 15 15 N 1.47288 * 87.50450 * 274.17210 * 14 12 11 16 16 C 1.34778 * 136.54385 * 151.48196 * 15 14 12 17 17 O 1.21544 * 120.00153 * 185.25770 * 16 15 14 18 18 C 1.47869 * 119.99658 * 4.97175 * 16 15 14 19 19 C 1.39560 * 120.12808 * 7.05236 * 18 16 15 20 20 C 1.38177 * 119.85377 * 179.97438 * 19 18 16 21 21 F 1.35098 * 119.94447 * 180.02562 * 20 19 18 22 22 C 1.38564 * 120.10508 * 0.02568 * 20 19 18 23 23 C 1.38413 * 120.25575 * 359.97147 * 22 20 19 24 24 Cl 1.73601 * 119.92311 * 179.97438 * 23 22 20 25 25 C 1.38105 * 120.14672 * 359.74746 * 23 22 20 26 26 C 1.46459 * 86.91281 * 331.21675 * 15 14 12 27 27 H 1.08996 * 111.44368 * 277.32112 * 26 15 14 28 28 C 1.45702 * 119.74111 * 25.66338 * 9 7 2 29 29 H 0.97000 * 120.00136 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.70634 * 356.08946 * 10 9 7 31 31 H 1.09002 * 109.70561 * 116.67250 * 10 9 7 32 32 H 1.09001 * 109.51572 * 61.51638 * 11 10 9 33 33 H 1.08999 * 109.51108 * 181.61812 * 11 10 9 34 34 H 1.08999 * 113.52129 * 159.53631 * 14 12 11 35 35 H 1.08997 * 113.62655 * 28.82328 * 14 12 11 36 36 H 1.08002 * 120.07288 * 0.02562 * 19 18 16 37 37 H 1.08002 * 119.86972 * 179.97438 * 22 20 19 38 38 H 1.08002 * 120.05521 * 180.26895 * 25 23 22 39 39 H 1.09004 * 108.78822 * 19.13067 * 28 9 7 40 40 H 1.09002 * 108.78952 * 260.91980 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0597 -1.2196 0.2548 9 7 1.3642 -2.3658 -0.3213 10 6 1.8659 -3.6423 0.1947 11 6 2.1385 -4.5669 -0.9955 12 6 0.8465 -4.7533 -1.7949 13 1 0.1949 -5.5344 -1.4033 14 6 1.1209 -4.8061 -3.3128 15 7 1.0533 -3.3348 -3.3110 16 6 1.5870 -2.3300 -4.0336 17 8 1.3949 -1.1759 -3.7042 18 6 2.4113 -2.6318 -5.2234 19 6 2.5184 -3.9438 -5.6870 20 6 3.2898 -4.2194 -6.7997 21 9 3.3943 -5.4888 -7.2503 22 6 3.9564 -3.1960 -7.4541 23 6 3.8533 -1.8932 -6.9982 24 17 4.6927 -0.6177 -7.8243 25 6 3.0805 -1.6050 -5.8905 26 6 0.1390 -3.4571 -2.1734 27 1 -0.8814 -3.6543 -2.5018 28 6 0.1833 -2.3250 -1.1737 29 1 -0.4850 0.8400 -0.0004 30 1 2.7887 -3.4769 0.7505 31 1 1.1192 -4.0936 0.8480 32 1 2.9012 -4.1223 -1.6348 33 1 2.4860 -5.5342 -0.6329 34 1 0.3209 -5.2777 -3.8834 35 1 2.1070 -5.1961 -3.5652 36 1 1.9987 -4.7419 -5.1776 37 1 4.5587 -3.4158 -8.3232 38 1 2.9976 -0.5873 -5.5387 39 1 0.1732 -1.3786 -1.7145 40 1 -0.7055 -2.3768 -0.5449 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084682069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:15 Heat of formation + Delta-G solvation = 1.340981 kcal Electronic energy + Delta-G solvation = -27598.720918 eV Core-core repulsion = 23548.710958 eV Total energy + Delta-G solvation = -4050.009960 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.08465 -42.15874 -40.42167 -38.85680 -37.58592 -37.08928 -34.05276 -32.82614 -31.91289 -31.68241 -30.26910 -28.68677 -25.88327 -25.41280 -24.48001 -23.63111 -22.63764 -21.54440 -19.79273 -19.17733 -18.23737 -17.84155 -17.48128 -17.35886 -17.02228 -16.82294 -16.72899 -16.21141 -15.82343 -15.56823 -15.20170 -14.99488 -14.77577 -14.51712 -14.37193 -14.18079 -14.02093 -13.58265 -13.23975 -13.17096 -12.94237 -12.74627 -12.70509 -12.48801 -12.34902 -12.23381 -12.19932 -11.97705 -11.74750 -11.49649 -11.07539 -10.74953 -10.42453 -10.28137 -9.97639 -9.57965 -8.65727 -7.85070 -5.27722 -0.57249 -0.24424 0.78103 1.34651 1.43165 1.45272 1.61056 1.81565 2.46825 2.48778 2.88236 3.24133 3.28405 3.38542 3.63895 3.73736 3.74974 3.81006 3.91890 4.01398 4.21390 4.37262 4.44424 4.49023 4.54738 4.64669 4.68881 4.71717 4.78075 4.81776 4.92398 4.96461 5.08709 5.12572 5.31826 5.39844 5.44842 5.57640 5.70923 5.82501 6.40718 6.84010 7.16818 7.20685 7.97951 8.35643 9.19277 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.011174 B = 0.004520 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.228458 B = 6193.574899 C = 8073.841551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.041 4.041 3 Si 0.949 3.051 4 H -0.301 1.301 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.254 4.254 8 H 0.057 0.943 9 N -0.601 5.601 10 C 0.139 3.861 11 C -0.106 4.106 12 C -0.099 4.099 13 H 0.137 0.863 14 C 0.096 3.904 15 N -0.631 5.631 16 C 0.569 3.431 17 O -0.570 6.570 18 C -0.090 4.090 19 C -0.116 4.116 20 C 0.114 3.886 21 F -0.122 7.122 22 C -0.113 4.113 23 C -0.015 4.015 24 Cl -0.044 7.044 25 C -0.080 4.080 26 C 0.105 3.895 27 H 0.100 0.900 28 C 0.180 3.820 29 H 0.244 0.756 30 H 0.048 0.952 31 H 0.028 0.972 32 H 0.040 0.960 33 H 0.101 0.899 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.176 0.824 37 H 0.179 0.821 38 H 0.129 0.871 39 H 0.049 0.951 40 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.896 -16.556 -16.020 23.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.236 4.236 3 Si 0.779 3.221 4 H -0.229 1.229 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.384 4.384 8 H 0.074 0.926 9 N -0.324 5.324 10 C 0.014 3.986 11 C -0.145 4.145 12 C -0.118 4.118 13 H 0.155 0.845 14 C -0.024 4.024 15 N -0.365 5.365 16 C 0.360 3.640 17 O -0.450 6.450 18 C -0.093 4.093 19 C -0.135 4.135 20 C 0.095 3.905 21 F -0.100 7.100 22 C -0.132 4.132 23 C -0.042 4.042 24 Cl -0.015 7.015 25 C -0.100 4.100 26 C 0.001 3.999 27 H 0.117 0.883 28 C 0.053 3.947 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.120 0.880 34 H 0.145 0.855 35 H 0.120 0.880 36 H 0.193 0.807 37 H 0.196 0.804 38 H 0.147 0.853 39 H 0.067 0.933 40 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 5.867 -15.589 -16.030 23.116 hybrid contribution 0.161 1.889 0.117 1.900 sum 6.028 -13.699 -15.913 21.846 Atomic orbital electron populations 1.70160 1.06321 1.25088 1.56192 1.25533 0.95916 1.00778 1.01383 0.85536 0.78724 0.81094 0.76795 1.22922 1.21558 1.18920 1.19330 0.91988 0.86409 1.40707 0.92556 1.43684 1.31862 1.02393 1.54501 1.20968 0.97030 0.85990 0.94616 1.21734 0.95661 1.00068 0.97058 1.22865 0.97904 0.95919 0.95084 0.84510 1.23867 1.04393 0.77976 0.96184 1.49459 1.46655 1.08096 1.32291 1.17959 0.80105 0.83708 0.82257 1.90878 1.62079 1.21744 1.70262 1.19552 0.99755 0.94050 0.95992 1.21956 0.98910 0.96800 0.95865 1.17132 0.99183 0.79582 0.94648 1.91573 1.94633 1.35495 1.88285 1.21378 1.00479 0.89436 1.01935 1.20392 0.98292 0.90345 0.95181 1.98400 1.76023 1.49909 1.77173 1.21178 0.94738 1.00335 0.93727 1.22777 0.94485 0.96731 0.85868 0.88253 1.19797 0.87839 0.96683 0.90360 0.94695 0.93332 0.95363 0.94117 0.88027 0.85508 0.88042 0.80684 0.80355 0.85290 0.93277 0.98511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.47 11.05 21.65 0.24 -59.23 16 2 C -0.04 -2.48 4.91 84.86 0.42 -2.07 16 3 Si 0.95 50.20 29.58 68.60 2.03 52.23 16 4 H -0.30 -16.57 7.11 99.48 0.71 -15.87 16 5 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 6 H -0.26 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.25 -15.01 9.51 84.03 0.80 -14.21 16 8 H 0.06 3.30 7.84 -2.91 -0.02 3.28 16 9 N -0.60 -31.04 3.02 -707.24 -2.14 -33.18 16 10 C 0.14 5.49 6.46 86.42 0.56 6.04 16 11 C -0.11 -3.02 5.71 30.67 0.17 -2.84 16 12 C -0.10 -2.37 4.57 -10.50 -0.05 -2.41 16 13 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 14 C 0.10 1.83 5.55 81.18 0.45 2.28 16 15 N -0.63 -20.76 3.30 -869.12 -2.87 -23.63 16 16 C 0.57 22.35 7.96 86.79 0.69 23.04 16 17 O -0.57 -29.76 15.53 -3.85 -0.06 -29.82 16 18 C -0.09 -2.66 5.87 -20.09 -0.12 -2.78 16 19 C -0.12 -2.43 9.13 22.57 0.21 -2.22 16 20 C 0.11 2.05 7.29 22.33 0.16 2.22 16 21 F -0.12 -1.98 17.26 44.97 0.78 -1.20 16 22 C -0.11 -1.96 9.80 22.39 0.22 -1.74 16 23 C -0.02 -0.34 6.31 22.28 0.14 -0.20 16 24 Cl -0.04 -0.92 28.95 -2.72 -0.08 -1.00 16 25 C -0.08 -2.33 9.37 22.55 0.21 -2.12 16 26 C 0.11 3.69 4.03 38.69 0.16 3.85 16 27 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 28 C 0.18 9.05 4.56 85.91 0.39 9.44 16 29 H 0.24 15.30 8.31 -92.71 -0.77 14.53 16 30 H 0.05 1.94 7.87 -2.39 -0.02 1.92 16 31 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.04 1.33 7.69 -2.39 -0.02 1.31 16 33 H 0.10 2.04 8.14 -2.39 -0.02 2.03 16 34 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.10 1.53 6.61 -2.39 -0.02 1.51 16 36 H 0.18 2.79 4.21 -2.91 -0.01 2.78 16 37 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.13 4.38 7.66 -2.91 -0.02 4.36 16 39 H 0.05 3.00 5.01 -2.39 -0.01 2.99 16 40 H 0.00 -0.16 7.99 -2.39 -0.02 -0.18 16 Total: -1.00 -81.22 343.04 3.40 -77.82 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: 1.09 Total: 1.74 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 4.41 Total: 16.27 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -4.77 Total: -116.05 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.06 Total: -29.82 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.78 Total: -1.20 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.03 Total: 52.23 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -81.22 3.40 -77.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084682069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.160 kcal (2) G-P(sol) polarization free energy of solvation -81.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds