Wall clock time and date at job start Tue Mar 31 2020 20:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00068 * 2 1 4 4 H 1.48496 * 109.47170 * 240.00288 * 3 2 1 5 5 H 1.48497 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46890 * 120.00341 * 3 2 1 7 7 C 1.38820 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99763 * 191.93502 * 7 2 1 9 9 N 1.36937 * 119.99833 * 11.93498 * 7 2 1 10 10 C 1.46619 * 119.88620 * 203.13740 * 9 7 2 11 11 C 1.53103 * 108.04994 * 237.35072 * 10 9 7 12 12 C 1.53013 * 109.44872 * 301.00293 * 11 10 9 13 13 H 1.08996 * 113.42017 * 274.22887 * 12 11 10 14 14 C 1.54657 * 110.83525 * 143.88585 * 12 11 10 15 15 N 1.47803 * 85.79001 * 270.23151 * 14 12 11 16 16 C 1.34776 * 135.01290 * 153.84266 * 15 14 12 17 17 O 1.21563 * 120.00175 * 174.64756 * 16 15 14 18 18 C 1.47777 * 119.99820 * 354.65188 * 16 15 14 19 19 C 1.39632 * 120.14608 * 28.92926 * 18 16 15 20 20 C 1.37902 * 119.91381 * 179.77071 * 19 18 16 21 21 C 1.38393 * 120.20786 * 0.53280 * 20 19 18 22 22 C 1.38461 * 120.29095 * 359.70008 * 21 20 19 23 23 F 1.35108 * 119.95477 * 180.02562 * 22 21 20 24 24 C 1.38377 * 120.08425 * 0.04295 * 22 21 20 25 25 Cl 1.73598 * 120.10602 * 180.02562 * 24 22 21 26 26 C 1.46819 * 89.97949 * 333.80764 * 15 14 12 27 27 H 1.09001 * 111.55993 * 274.48810 * 26 15 14 28 28 C 1.45773 * 119.95827 * 23.19286 * 9 7 2 29 29 H 0.97002 * 119.99794 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.75492 * 117.69935 * 10 9 7 31 31 H 1.09005 * 109.75387 * 357.00530 * 10 9 7 32 32 H 1.09006 * 109.47554 * 60.99498 * 11 10 9 33 33 H 1.09000 * 109.47454 * 181.00293 * 11 10 9 34 34 H 1.08996 * 113.81880 * 24.44808 * 14 12 11 35 35 H 1.09000 * 113.81740 * 155.89131 * 14 12 11 36 36 H 1.08004 * 120.04252 * 0.02562 * 19 18 16 37 37 H 1.08002 * 119.89029 * 180.25683 * 20 19 18 38 38 H 1.08000 * 119.85230 * 179.72543 * 21 20 19 39 39 H 1.08996 * 108.70348 * 19.73601 * 28 9 7 40 40 H 1.09002 * 108.69133 * 261.73045 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0728 -1.2124 0.1929 9 7 1.3477 -2.3752 -0.2463 10 6 1.9061 -3.6437 0.2318 11 6 2.0911 -4.5660 -0.9762 12 6 0.7407 -4.7846 -1.6617 13 1 0.1597 -5.5969 -1.2252 14 6 0.9107 -4.8722 -3.1964 15 7 0.7210 -3.4063 -3.1917 16 6 1.0993 -2.3937 -3.9966 17 8 0.7027 -1.2650 -3.7807 18 6 1.9960 -2.6554 -5.1416 19 6 1.9853 -3.9023 -5.7700 20 6 2.8208 -4.1397 -6.8412 21 6 3.6780 -3.1496 -7.2886 22 6 3.6991 -1.9117 -6.6687 23 9 4.5383 -0.9498 -7.1114 24 6 2.8621 -1.6585 -5.5962 25 17 2.8877 -0.1064 -4.8191 26 6 -0.0510 -3.5108 -1.9473 27 1 -1.1012 -3.7261 -2.1443 28 6 0.0901 -2.3602 -0.9833 29 1 -0.4850 0.8401 0.0004 30 1 1.2206 -4.1028 0.9442 31 1 2.8693 -3.4653 0.7101 32 1 2.7860 -4.1079 -1.6801 33 1 2.4895 -5.5246 -0.6439 34 1 1.9055 -5.1863 -3.5119 35 1 0.1122 -5.4197 -3.6972 36 1 1.3206 -4.6783 -5.4203 37 1 2.8092 -5.1030 -7.3295 38 1 4.3330 -3.3433 -8.1251 39 1 0.0231 -1.4263 -1.5413 40 1 -0.7333 -2.3984 -0.2701 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084683194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:20 Heat of formation + Delta-G solvation = 22.581359 kcal Electronic energy + Delta-G solvation = -28115.639855 eV Core-core repulsion = 24066.550947 eV Total energy + Delta-G solvation = -4049.088908 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.06950 -40.64843 -39.15294 -37.25341 -36.26905 -35.20045 -32.22456 -31.48180 -30.68478 -30.11601 -28.70390 -27.00277 -24.30452 -23.91351 -23.00366 -22.51942 -21.06647 -20.13587 -18.37220 -17.58698 -16.80455 -16.68774 -16.42107 -15.94324 -15.69746 -15.62021 -15.27355 -14.48318 -14.30328 -13.84122 -13.68835 -13.52056 -13.25692 -13.21644 -12.77882 -12.56053 -12.49620 -12.19365 -11.95591 -11.76928 -11.50847 -11.45187 -11.06474 -10.79499 -10.64906 -10.55786 -10.47786 -10.19197 -9.84482 -9.77969 -9.62930 -9.14697 -8.97520 -8.80922 -8.27793 -8.12645 -6.60208 -5.62184 -3.03726 0.57351 0.79430 2.18952 2.89119 3.08279 3.48657 3.54860 3.57426 3.63956 3.94168 4.34829 4.51807 4.61527 4.64058 4.73588 4.88543 5.13678 5.19105 5.36137 5.43462 5.48726 5.55088 5.61552 5.63922 5.70057 5.76373 5.87425 5.93846 6.12416 6.15834 6.30112 6.37912 6.41876 6.53140 6.58674 6.78095 6.99676 7.52673 7.80812 7.98304 8.21201 8.59736 8.66624 9.38220 10.01973 10.48696 11.45390 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.011165 B = 0.005877 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.163428 B = 4763.559635 C = 6504.021726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.011 3.989 3 Si 0.898 3.102 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.251 4.251 8 H 0.063 0.937 9 N -0.586 5.586 10 C 0.147 3.853 11 C -0.118 4.118 12 C -0.109 4.109 13 H 0.088 0.912 14 C 0.087 3.913 15 N -0.623 5.623 16 C 0.572 3.428 17 O -0.489 6.489 18 C -0.081 4.081 19 C -0.094 4.094 20 C -0.098 4.098 21 C -0.129 4.129 22 C 0.099 3.901 23 F -0.126 7.126 24 C -0.033 4.033 25 Cl -0.005 7.005 26 C 0.128 3.872 27 H 0.074 0.926 28 C 0.161 3.839 29 H 0.252 0.748 30 H 0.020 0.980 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.114 0.886 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.929 -14.262 -13.539 20.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.187 4.187 3 Si 0.729 3.271 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.380 4.380 8 H 0.081 0.919 9 N -0.308 5.308 10 C 0.021 3.979 11 C -0.157 4.157 12 C -0.128 4.128 13 H 0.106 0.894 14 C -0.036 4.036 15 N -0.360 5.360 16 C 0.359 3.641 17 O -0.362 6.362 18 C -0.085 4.085 19 C -0.113 4.113 20 C -0.116 4.116 21 C -0.148 4.148 22 C 0.078 3.922 23 F -0.104 7.104 24 C -0.062 4.062 25 Cl 0.025 6.975 26 C 0.025 3.975 27 H 0.092 0.908 28 C 0.035 3.965 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.132 0.868 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.675 -13.084 -13.473 19.137 hybrid contribution 0.619 1.070 -0.282 1.268 sum 4.294 -12.014 -13.755 18.761 Atomic orbital electron populations 1.69960 1.05077 1.25296 1.54625 1.24867 0.95292 0.97893 1.00649 0.86426 0.78957 0.83898 0.77863 1.21060 1.21629 1.21142 1.19059 0.91078 0.84218 1.43639 0.91929 1.43506 1.24496 1.01587 1.61221 1.20734 0.97318 0.87385 0.92508 1.21871 0.94484 0.99373 1.00001 1.22865 0.98562 0.97652 0.93721 0.89414 1.23700 1.01097 0.81536 0.97246 1.49699 1.54650 1.05816 1.25857 1.17376 0.81323 0.84407 0.80980 1.90927 1.54576 1.20599 1.70102 1.19929 0.97392 0.93167 0.98024 1.21538 0.98966 0.95333 0.95487 1.21008 0.95024 0.99293 0.96260 1.21235 1.01054 0.91335 1.01200 1.17297 0.92258 0.87422 0.95192 1.91549 1.68600 1.62055 1.88225 1.21165 0.98241 0.91156 0.95641 1.98485 1.97323 1.23060 1.78672 1.22736 0.94082 0.96925 0.83746 0.90829 1.20239 0.87863 0.96444 0.91934 0.93728 0.96194 0.92608 0.92107 0.92708 0.90428 0.90156 0.83958 0.83980 0.83680 0.86787 0.95138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 10.67 55.49 0.59 -26.87 16 2 C 0.01 0.33 5.03 -17.43 -0.09 0.24 16 3 Si 0.90 23.63 29.57 -169.99 -5.03 18.61 16 4 H -0.28 -7.59 7.11 56.52 0.40 -7.19 16 5 H -0.29 -7.68 7.11 56.52 0.40 -7.27 16 6 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.25 -7.14 9.59 -15.06 -0.14 -7.28 16 8 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 9 N -0.59 -14.78 3.03 -175.00 -0.53 -15.31 16 10 C 0.15 2.98 6.47 -3.92 -0.03 2.96 16 11 C -0.12 -1.89 5.66 -26.67 -0.15 -2.04 16 12 C -0.11 -1.56 4.39 -89.97 -0.40 -1.96 16 13 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 14 C 0.09 1.05 5.73 -3.00 -0.02 1.04 16 15 N -0.62 -10.90 3.34 -175.15 -0.58 -11.49 16 16 C 0.57 11.36 7.51 -12.36 -0.09 11.27 16 17 O -0.49 -12.01 13.97 5.31 0.07 -11.94 16 18 C -0.08 -1.31 5.82 -104.95 -0.61 -1.92 16 19 C -0.09 -1.07 8.66 -39.18 -0.34 -1.41 16 20 C -0.10 -0.86 10.03 -39.65 -0.40 -1.25 16 21 C -0.13 -1.28 10.02 -39.44 -0.40 -1.68 16 22 C 0.10 1.36 7.27 -39.45 -0.29 1.07 16 23 F -0.13 -1.80 16.83 2.25 0.04 -1.76 16 24 C -0.03 -0.56 6.34 -39.00 -0.25 -0.80 16 25 Cl -0.01 -0.10 26.14 -51.86 -1.36 -1.46 16 26 C 0.13 2.38 4.22 -69.59 -0.29 2.08 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 C 0.16 3.95 4.64 -5.56 -0.03 3.93 16 29 H 0.25 7.55 8.31 -40.82 -0.34 7.22 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 1.12 7.87 -51.93 -0.41 0.72 16 32 H 0.06 1.09 7.69 -51.93 -0.40 0.69 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.83 7.14 -51.93 -0.37 0.45 16 35 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 36 H 0.14 1.29 5.68 -52.48 -0.30 1.00 16 37 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.11 3.30 4.70 -51.93 -0.24 3.06 16 40 H 0.03 0.81 8.01 -51.93 -0.42 0.39 16 LS Contribution 340.24 15.07 5.13 5.13 Total: -1.00 -34.59 340.24 -9.81 -44.41 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -4.64 Total: -3.56 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -3.51 Total: 4.25 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.52 Total: -53.67 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.07 Total: -11.94 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -5.03 Total: 18.61 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.36 Total: -1.46 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.59 -9.81 -44.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084683194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.988 kcal (2) G-P(sol) polarization free energy of solvation -34.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds