Wall clock time and date at job start Tue Mar 31 2020 20:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00068 * 2 1 4 4 H 1.48496 * 109.47170 * 240.00288 * 3 2 1 5 5 H 1.48497 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46890 * 120.00341 * 3 2 1 7 7 C 1.38820 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99763 * 191.93502 * 7 2 1 9 9 N 1.36937 * 119.99833 * 11.93498 * 7 2 1 10 10 C 1.46619 * 119.88620 * 203.13740 * 9 7 2 11 11 C 1.53103 * 108.04994 * 237.35072 * 10 9 7 12 12 C 1.53013 * 109.44872 * 301.00293 * 11 10 9 13 13 H 1.08996 * 113.42017 * 274.22887 * 12 11 10 14 14 C 1.54657 * 110.83525 * 143.88585 * 12 11 10 15 15 N 1.47803 * 85.79001 * 270.23151 * 14 12 11 16 16 C 1.34776 * 135.01290 * 153.84266 * 15 14 12 17 17 O 1.21563 * 120.00175 * 174.64756 * 16 15 14 18 18 C 1.47777 * 119.99820 * 354.65188 * 16 15 14 19 19 C 1.39632 * 120.14608 * 28.92926 * 18 16 15 20 20 C 1.37902 * 119.91381 * 179.77071 * 19 18 16 21 21 C 1.38393 * 120.20786 * 0.53280 * 20 19 18 22 22 C 1.38461 * 120.29095 * 359.70008 * 21 20 19 23 23 F 1.35108 * 119.95477 * 180.02562 * 22 21 20 24 24 C 1.38377 * 120.08425 * 0.04295 * 22 21 20 25 25 Cl 1.73598 * 120.10602 * 180.02562 * 24 22 21 26 26 C 1.46819 * 89.97949 * 333.80764 * 15 14 12 27 27 H 1.09001 * 111.55993 * 274.48810 * 26 15 14 28 28 C 1.45773 * 119.95827 * 23.19286 * 9 7 2 29 29 H 0.97002 * 119.99794 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.75492 * 117.69935 * 10 9 7 31 31 H 1.09005 * 109.75387 * 357.00530 * 10 9 7 32 32 H 1.09006 * 109.47554 * 60.99498 * 11 10 9 33 33 H 1.09000 * 109.47454 * 181.00293 * 11 10 9 34 34 H 1.08996 * 113.81880 * 24.44808 * 14 12 11 35 35 H 1.09000 * 113.81740 * 155.89131 * 14 12 11 36 36 H 1.08004 * 120.04252 * 0.02562 * 19 18 16 37 37 H 1.08002 * 119.89029 * 180.25683 * 20 19 18 38 38 H 1.08000 * 119.85230 * 179.72543 * 21 20 19 39 39 H 1.08996 * 108.70348 * 19.73601 * 28 9 7 40 40 H 1.09002 * 108.69133 * 261.73045 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0728 -1.2124 0.1929 9 7 1.3477 -2.3752 -0.2463 10 6 1.9061 -3.6437 0.2318 11 6 2.0911 -4.5660 -0.9762 12 6 0.7407 -4.7846 -1.6617 13 1 0.1597 -5.5969 -1.2252 14 6 0.9107 -4.8722 -3.1964 15 7 0.7210 -3.4063 -3.1917 16 6 1.0993 -2.3937 -3.9966 17 8 0.7027 -1.2650 -3.7807 18 6 1.9960 -2.6554 -5.1416 19 6 1.9853 -3.9023 -5.7700 20 6 2.8208 -4.1397 -6.8412 21 6 3.6780 -3.1496 -7.2886 22 6 3.6991 -1.9117 -6.6687 23 9 4.5383 -0.9498 -7.1114 24 6 2.8621 -1.6585 -5.5962 25 17 2.8877 -0.1064 -4.8191 26 6 -0.0510 -3.5108 -1.9473 27 1 -1.1012 -3.7261 -2.1443 28 6 0.0901 -2.3602 -0.9833 29 1 -0.4850 0.8401 0.0004 30 1 1.2206 -4.1028 0.9442 31 1 2.8693 -3.4653 0.7101 32 1 2.7860 -4.1079 -1.6801 33 1 2.4895 -5.5246 -0.6439 34 1 1.9055 -5.1863 -3.5119 35 1 0.1122 -5.4197 -3.6972 36 1 1.3206 -4.6783 -5.4203 37 1 2.8092 -5.1030 -7.3295 38 1 4.3330 -3.3433 -8.1251 39 1 0.0231 -1.4263 -1.5413 40 1 -0.7333 -2.3984 -0.2701 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084683194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:19 Heat of formation + Delta-G solvation = -0.812972 kcal Electronic energy + Delta-G solvation = -28116.654309 eV Core-core repulsion = 24066.550947 eV Total energy + Delta-G solvation = -4050.103363 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.10882 -41.93961 -40.25442 -38.63138 -37.57611 -37.01448 -34.01924 -32.63328 -31.87897 -31.65040 -30.13797 -28.61241 -25.79005 -25.39772 -24.22704 -23.66452 -22.57717 -21.43090 -19.71998 -19.18875 -18.02789 -17.82198 -17.67372 -17.32727 -16.96046 -16.89194 -16.64504 -16.19934 -15.63008 -15.36627 -15.12809 -14.94423 -14.55879 -14.51428 -14.28074 -13.95077 -13.84198 -13.54073 -13.21539 -13.15025 -12.85332 -12.72877 -12.69874 -12.58906 -12.33635 -12.23861 -12.08321 -11.98880 -11.66712 -11.45421 -11.14201 -10.68168 -10.29998 -10.14852 -9.84912 -9.46548 -8.68525 -7.85125 -5.26780 -0.41553 -0.14573 0.98562 1.29392 1.37176 1.39396 1.75154 1.89411 2.44928 2.50889 2.94350 3.30519 3.34114 3.48446 3.70871 3.74440 3.76507 4.00764 4.08245 4.20508 4.30485 4.48456 4.53170 4.57141 4.68751 4.72550 4.78926 4.81696 4.89664 4.97739 5.01929 5.08924 5.10572 5.16624 5.34696 5.46451 5.55593 5.60017 5.74649 5.90786 6.40933 6.90000 7.19270 7.28545 7.97716 8.34301 9.18032 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.011165 B = 0.005877 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.163428 B = 4763.559635 C = 6504.021726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.042 4.042 3 Si 0.944 3.056 4 H -0.296 1.296 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.249 4.249 8 H 0.059 0.941 9 N -0.603 5.603 10 C 0.137 3.863 11 C -0.106 4.106 12 C -0.099 4.099 13 H 0.131 0.869 14 C 0.103 3.897 15 N -0.630 5.630 16 C 0.558 3.442 17 O -0.560 6.560 18 C -0.108 4.108 19 C -0.080 4.080 20 C -0.069 4.069 21 C -0.108 4.108 22 C 0.082 3.918 23 F -0.136 7.136 24 C -0.065 4.065 25 Cl -0.062 7.062 26 C 0.113 3.887 27 H 0.092 0.908 28 C 0.173 3.827 29 H 0.242 0.758 30 H 0.030 0.970 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.129 0.871 36 H 0.174 0.826 37 H 0.202 0.798 38 H 0.186 0.814 39 H 0.062 0.938 40 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.138 -20.255 -16.094 26.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.237 4.237 3 Si 0.774 3.226 4 H -0.223 1.223 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.380 4.380 8 H 0.077 0.923 9 N -0.326 5.326 10 C 0.012 3.988 11 C -0.145 4.145 12 C -0.118 4.118 13 H 0.148 0.852 14 C -0.018 4.018 15 N -0.365 5.365 16 C 0.348 3.652 17 O -0.438 6.438 18 C -0.111 4.111 19 C -0.098 4.098 20 C -0.086 4.086 21 C -0.127 4.127 22 C 0.062 3.938 23 F -0.115 7.115 24 C -0.094 4.094 25 Cl -0.033 7.033 26 C 0.009 3.991 27 H 0.110 0.890 28 C 0.047 3.953 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.147 0.853 36 H 0.191 0.809 37 H 0.219 0.781 38 H 0.204 0.796 39 H 0.080 0.920 40 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges 4.918 -19.173 -16.018 25.462 hybrid contribution 0.278 2.765 0.482 2.820 sum 5.195 -16.407 -15.536 23.185 Atomic orbital electron populations 1.70144 1.06115 1.24820 1.56631 1.25466 0.95948 1.00444 1.01887 0.85679 0.77950 0.81154 0.77847 1.22343 1.22072 1.19079 1.19325 0.91118 0.85860 1.41700 0.92303 1.43740 1.24476 1.02429 1.61963 1.21004 0.96723 0.86156 0.94906 1.21742 0.95479 0.99961 0.97335 1.22871 0.96961 0.95830 0.96091 0.85155 1.24040 1.04414 0.77918 0.95378 1.49884 1.53670 1.08262 1.24648 1.18107 0.81285 0.83967 0.81884 1.90889 1.57176 1.23520 1.72264 1.19804 0.97804 0.95401 0.98138 1.21928 0.99208 0.93405 0.95278 1.21675 0.91963 1.00833 0.94156 1.21809 1.00782 0.89165 1.00901 1.17666 0.92160 0.88916 0.95109 1.91519 1.68850 1.62917 1.88218 1.21446 1.01064 0.89397 0.97503 1.98450 1.97694 1.27084 1.80068 1.22670 0.96331 0.96592 0.83495 0.89045 1.19825 0.86454 0.97268 0.91763 0.94854 0.95223 0.93312 0.94251 0.88005 0.87819 0.85287 0.80893 0.78103 0.79640 0.91985 0.98861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.74 10.67 21.65 0.23 -60.51 16 2 C -0.04 -2.64 5.03 84.86 0.43 -2.22 16 3 Si 0.94 51.62 29.57 68.60 2.03 53.65 16 4 H -0.30 -16.61 7.11 99.48 0.71 -15.91 16 5 H -0.29 -16.14 7.11 99.48 0.71 -15.43 16 6 H -0.27 -13.49 7.11 99.48 0.71 -12.78 16 7 C -0.25 -14.97 9.59 84.04 0.81 -14.16 16 8 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 9 N -0.60 -31.56 3.03 -707.56 -2.15 -33.71 16 10 C 0.14 5.45 6.47 86.39 0.56 6.01 16 11 C -0.11 -3.03 5.66 30.63 0.17 -2.86 16 12 C -0.10 -2.38 4.39 -10.31 -0.05 -2.43 16 13 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 14 C 0.10 1.86 5.73 86.34 0.49 2.36 16 15 N -0.63 -21.04 3.34 -826.31 -2.76 -23.80 16 16 C 0.56 22.69 7.51 86.77 0.65 23.34 16 17 O -0.56 -29.88 13.97 -3.91 -0.05 -29.93 16 18 C -0.11 -3.36 5.82 -20.07 -0.12 -3.47 16 19 C -0.08 -1.38 8.66 22.53 0.20 -1.18 16 20 C -0.07 -0.71 10.03 22.23 0.22 -0.49 16 21 C -0.11 -1.58 10.02 22.36 0.22 -1.36 16 22 C 0.08 2.14 7.27 22.36 0.16 2.30 16 23 F -0.14 -3.89 16.83 44.97 0.76 -3.14 16 24 C -0.07 -2.25 6.34 22.65 0.14 -2.10 16 25 Cl -0.06 -2.74 26.14 -2.72 -0.07 -2.81 16 26 C 0.11 4.09 4.22 43.74 0.18 4.27 16 27 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 28 C 0.17 8.95 4.64 85.79 0.40 9.35 16 29 H 0.24 15.67 8.31 -92.71 -0.77 14.90 16 30 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 1.96 7.87 -2.38 -0.02 1.94 16 32 H 0.04 1.30 7.69 -2.38 -0.02 1.28 16 33 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.10 1.43 7.14 -2.39 -0.02 1.41 16 35 H 0.13 1.24 8.11 -2.39 -0.02 1.22 16 36 H 0.17 1.86 5.68 -2.91 -0.02 1.85 16 37 H 0.20 -0.07 8.06 -2.91 -0.02 -0.10 16 38 H 0.19 1.28 8.06 -2.91 -0.02 1.25 16 39 H 0.06 3.89 4.70 -2.39 -0.01 3.88 16 40 H -0.01 -0.36 8.01 -2.39 -0.02 -0.38 16 Total: -1.00 -91.64 340.24 3.55 -88.09 By element: Atomic # 1 Polarization: -6.28 SS G_CDS: 1.08 Total: -5.20 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 4.48 Total: 17.36 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -4.67 Total: -118.02 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.05 Total: -29.93 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.76 Total: -3.14 kcal Atomic # 14 Polarization: 51.62 SS G_CDS: 2.03 Total: 53.65 kcal Atomic # 17 Polarization: -2.74 SS G_CDS: -0.07 Total: -2.81 kcal Total: -91.64 3.55 -88.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084683194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.274 kcal (2) G-P(sol) polarization free energy of solvation -91.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds