Wall clock time and date at job start Tue Mar 31 2020 20:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48497 * 109.47238 * 275.14249 * 3 2 1 5 5 H 1.48506 * 109.46961 * 35.13908 * 3 2 1 6 6 H 1.48499 * 109.47045 * 155.13745 * 3 2 1 7 7 C 1.38811 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99815 * 338.55104 * 7 2 1 9 9 N 1.36934 * 120.00061 * 158.55386 * 7 2 1 10 10 C 1.46619 * 119.89074 * 330.52933 * 9 7 2 11 11 C 1.53097 * 108.01007 * 237.32756 * 10 9 7 12 12 C 1.51933 * 109.85826 * 301.65377 * 11 10 9 13 13 H 1.08997 * 112.47630 * 274.12647 * 12 11 10 14 14 C 1.54646 * 111.51621 * 143.19992 * 12 11 10 15 15 N 1.45810 * 85.76244 * 269.57040 * 14 12 11 16 16 C 1.34777 * 134.22661 * 154.11301 * 15 14 12 17 17 O 1.21577 * 119.99976 * 179.47733 * 16 15 14 18 18 C 1.47623 * 120.00175 * 359.48216 * 16 15 14 19 19 C 1.39896 * 120.17455 * 89.71918 * 18 16 15 20 20 F 1.35097 * 120.10755 * 0.02562 * 19 18 16 21 21 C 1.38245 * 119.78599 * 179.72865 * 19 18 16 22 22 C 1.38286 * 120.15412 * 0.57415 * 21 19 18 23 23 C 1.38344 * 120.36501 * 359.70052 * 22 21 19 24 24 C 1.38075 * 120.20375 * 0.02562 * 23 22 21 25 25 Cl 1.73595 * 120.07800 * 180.02562 * 24 23 22 26 26 C 1.46810 * 90.75747 * 333.74484 * 15 14 12 27 27 H 1.09000 * 111.56918 * 274.85030 * 26 15 14 28 28 C 1.45683 * 119.89137 * 150.55404 * 9 7 2 29 29 H 0.97005 * 120.00170 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.75328 * 356.95953 * 10 9 7 31 31 H 1.08999 * 109.75422 * 117.70024 * 10 9 7 32 32 H 1.09003 * 109.47433 * 61.02044 * 11 10 9 33 33 H 1.09000 * 109.47283 * 181.02588 * 11 10 9 34 34 H 1.09000 * 113.82386 * 23.73296 * 14 12 11 35 35 H 1.09004 * 113.82374 * 155.17555 * 14 12 11 36 36 H 1.08000 * 119.91579 * 180.32215 * 21 19 18 37 37 H 1.08004 * 119.81370 * 179.72065 * 22 21 19 38 38 H 1.07995 * 119.89672 * 180.02562 * 23 22 21 39 39 H 1.09004 * 108.71484 * 19.75960 * 28 9 7 40 40 H 1.08997 * 108.71590 * 261.73806 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3890 2.1092 -1.3944 5 1 1.5061 2.6189 0.8059 6 1 3.5978 1.4112 0.5886 7 6 2.0103 -1.2021 -0.0005 8 1 1.5263 -2.1053 0.3411 9 7 3.3085 -1.2430 -0.4341 10 6 3.7701 -0.2913 -1.4495 11 6 4.3166 -1.0915 -2.6347 12 6 5.4454 -1.9961 -2.1701 13 1 6.4100 -1.4886 -2.1628 14 6 5.4261 -3.3534 -2.9111 15 7 4.5708 -3.8124 -1.8230 16 6 3.6301 -4.7706 -1.7069 17 8 3.0661 -4.9430 -0.6437 18 6 3.2846 -5.6107 -2.8705 19 6 3.9751 -6.8045 -3.1057 20 9 4.9609 -7.1935 -2.2679 21 6 3.6411 -7.5879 -4.1947 22 6 2.6360 -7.1878 -5.0561 23 6 1.9530 -6.0056 -4.8328 24 6 2.2704 -5.2145 -3.7466 25 17 1.4108 -3.7321 -3.4691 26 6 5.1578 -2.8183 -0.9162 27 1 6.0757 -3.1865 -0.4578 28 6 4.2264 -2.2323 0.1145 29 1 -0.4851 0.8401 -0.0004 30 1 2.9369 0.3304 -1.7774 31 1 4.5582 0.3369 -1.0344 32 1 3.5220 -1.7092 -3.0534 33 1 4.6839 -0.4054 -3.3979 34 1 4.9259 -3.3195 -3.8790 35 1 6.3969 -3.8474 -2.9504 36 1 4.1692 -8.5125 -4.3753 37 1 2.3827 -7.8019 -5.9077 38 1 1.1691 -5.7007 -5.5101 39 1 3.6451 -3.0397 0.5598 40 1 4.8219 -1.7612 0.8965 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084791124.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:57 Heat of formation + Delta-G solvation = 16.743432 kcal Electronic energy + Delta-G solvation = -28255.728732 eV Core-core repulsion = 24206.386672 eV Total energy + Delta-G solvation = -4049.342060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.18456 -40.87656 -39.31931 -37.55530 -36.38686 -35.56237 -32.09853 -31.51911 -31.14331 -30.72679 -29.02845 -27.21101 -24.45918 -23.71320 -23.15518 -22.94500 -21.25631 -20.38417 -18.41256 -17.73565 -17.26398 -16.92290 -16.57658 -16.16366 -15.71121 -15.40854 -15.33113 -15.10352 -14.79156 -13.93102 -13.76200 -13.64391 -13.44937 -13.29202 -13.23609 -12.76041 -12.59612 -12.30361 -12.21086 -11.87910 -11.80071 -11.45473 -11.37039 -11.15493 -10.93571 -10.82026 -10.64150 -10.30655 -9.95830 -9.71162 -9.40744 -9.32438 -9.15618 -8.94963 -8.60910 -8.31640 -6.85005 -5.84518 -3.20098 0.60732 0.72946 2.05481 2.78047 2.91911 3.16012 3.36039 3.53252 3.56608 3.88154 4.26902 4.45940 4.50443 4.60911 4.70001 4.82873 4.99543 5.02764 5.07866 5.23538 5.41818 5.44052 5.48510 5.58369 5.62971 5.67319 5.73093 5.82862 5.85564 5.92537 6.01517 6.21751 6.32320 6.35871 6.38445 6.63507 6.69336 6.84077 6.98315 7.96010 8.12386 8.37651 8.48435 9.09108 9.83839 10.17833 11.31549 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.016439 B = 0.004806 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.893581 B = 5824.744084 C = 6498.836528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.877 3.123 4 H -0.291 1.291 5 H -0.305 1.305 6 H -0.270 1.270 7 C -0.248 4.248 8 H 0.084 0.916 9 N -0.594 5.594 10 C 0.130 3.870 11 C -0.123 4.123 12 C -0.105 4.105 13 H 0.089 0.911 14 C 0.095 3.905 15 N -0.615 5.615 16 C 0.588 3.412 17 O -0.505 6.505 18 C -0.142 4.142 19 C 0.139 3.861 20 F -0.126 7.126 21 C -0.156 4.156 22 C -0.068 4.068 23 C -0.125 4.125 24 C 0.012 3.988 25 Cl -0.008 7.008 26 C 0.133 3.867 27 H 0.084 0.916 28 C 0.143 3.857 29 H 0.260 0.740 30 H 0.074 0.926 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.081 0.919 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.575 -12.379 -14.268 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.708 3.292 4 H -0.219 1.219 5 H -0.233 1.233 6 H -0.195 1.195 7 C -0.376 4.376 8 H 0.102 0.898 9 N -0.317 5.317 10 C 0.004 3.996 11 C -0.162 4.162 12 C -0.124 4.124 13 H 0.107 0.893 14 C -0.028 4.028 15 N -0.350 5.350 16 C 0.375 3.625 17 O -0.380 6.380 18 C -0.147 4.147 19 C 0.119 3.881 20 F -0.104 7.104 21 C -0.175 4.175 22 C -0.087 4.087 23 C -0.144 4.144 24 C -0.016 4.016 25 Cl 0.022 6.978 26 C 0.030 3.970 27 H 0.102 0.898 28 C 0.017 3.983 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.099 0.901 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 10.910 -12.422 -13.546 21.373 hybrid contribution 0.571 0.885 0.055 1.055 sum 11.481 -11.537 -13.491 21.141 Atomic orbital electron populations 1.69868 1.05720 1.26208 1.53321 1.25273 0.95146 0.97272 0.99791 0.86991 0.80367 0.85110 0.76757 1.21888 1.23288 1.19505 1.18920 0.85248 0.94667 1.38783 0.89821 1.43775 1.09033 1.35711 1.43194 1.21187 0.97694 0.92012 0.88660 1.21723 0.96933 0.98384 0.99149 1.22661 1.00158 0.94451 0.95145 0.89251 1.23220 0.93873 0.93249 0.92495 1.49254 1.36641 1.33607 1.15513 1.17233 0.79697 0.78610 0.86970 1.90850 1.51336 1.67816 1.27960 1.19949 0.99386 0.96856 0.98479 1.17478 0.87665 0.93141 0.89849 1.91549 1.58642 1.90356 1.69894 1.21141 1.00564 1.01056 0.94738 1.21071 0.93710 0.95334 0.98549 1.21142 1.01493 0.94677 0.97079 1.20987 0.94214 0.91609 0.94791 1.98537 1.74304 1.29508 1.95465 1.22470 0.95522 0.85426 0.93555 0.89846 1.20198 0.92248 0.93488 0.92401 0.93002 0.90818 0.95578 0.91092 0.92275 0.90474 0.90196 0.83715 0.83744 0.83673 0.90108 0.95571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.56 13.97 55.49 0.78 -27.78 16 2 C 0.02 0.69 5.18 -17.43 -0.09 0.60 16 3 Si 0.88 22.60 24.44 -169.99 -4.15 18.44 16 4 H -0.29 -7.19 6.71 56.52 0.38 -6.81 16 5 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 6 H -0.27 -6.79 6.73 56.52 0.38 -6.41 16 7 C -0.25 -7.18 9.94 -15.06 -0.15 -7.33 16 8 H 0.08 2.73 8.02 -52.48 -0.42 2.31 16 9 N -0.59 -14.40 2.74 -175.07 -0.48 -14.88 16 10 C 0.13 2.80 4.19 -3.93 -0.02 2.78 16 11 C -0.12 -2.08 5.68 -27.22 -0.15 -2.24 16 12 C -0.10 -1.49 4.30 -90.64 -0.39 -1.88 16 13 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 14 C 0.10 1.21 7.83 -4.10 -0.03 1.18 16 15 N -0.62 -10.39 3.27 -182.31 -0.60 -10.99 16 16 C 0.59 11.29 6.11 -12.43 -0.08 11.21 16 17 O -0.51 -11.93 16.24 5.30 0.09 -11.85 16 18 C -0.14 -2.24 5.35 -104.88 -0.56 -2.80 16 19 C 0.14 1.83 7.29 -38.96 -0.28 1.55 16 20 F -0.13 -1.78 16.83 2.25 0.04 -1.75 16 21 C -0.16 -1.46 10.01 -39.56 -0.40 -1.86 16 22 C -0.07 -0.55 10.03 -39.52 -0.40 -0.95 16 23 C -0.13 -1.30 9.81 -39.60 -0.39 -1.69 16 24 C 0.01 0.17 6.35 -39.08 -0.25 -0.08 16 25 Cl -0.01 -0.14 28.04 -51.86 -1.45 -1.59 16 26 C 0.13 2.22 4.30 -69.60 -0.30 1.92 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 C 0.14 3.03 6.18 -5.60 -0.03 3.00 16 29 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 30 H 0.07 1.77 4.50 -51.93 -0.23 1.53 16 31 H 0.03 0.54 7.30 -51.93 -0.38 0.16 16 32 H 0.07 1.33 7.66 -51.93 -0.40 0.93 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.93 7.97 -51.93 -0.41 0.52 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 38 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.08 1.94 6.34 -51.93 -0.33 1.61 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -35.51 343.63 -8.86 -44.37 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -4.74 Total: -2.59 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -3.52 Total: 3.44 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.30 Total: -53.65 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.15 Total: 18.44 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.45 Total: -1.59 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.51 -8.86 -44.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084791124.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.111 kcal (2) G-P(sol) polarization free energy of solvation -35.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds