Wall clock time and date at job start Tue Mar 31 2020 20:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48497 * 109.47238 * 275.14249 * 3 2 1 5 5 H 1.48506 * 109.46961 * 35.13908 * 3 2 1 6 6 H 1.48499 * 109.47045 * 155.13745 * 3 2 1 7 7 C 1.38811 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99815 * 338.55104 * 7 2 1 9 9 N 1.36934 * 120.00061 * 158.55386 * 7 2 1 10 10 C 1.46619 * 119.89074 * 330.52933 * 9 7 2 11 11 C 1.53097 * 108.01007 * 237.32756 * 10 9 7 12 12 C 1.51933 * 109.85826 * 301.65377 * 11 10 9 13 13 H 1.08997 * 112.47630 * 274.12647 * 12 11 10 14 14 C 1.54646 * 111.51621 * 143.19992 * 12 11 10 15 15 N 1.45810 * 85.76244 * 269.57040 * 14 12 11 16 16 C 1.34777 * 134.22661 * 154.11301 * 15 14 12 17 17 O 1.21577 * 119.99976 * 179.47733 * 16 15 14 18 18 C 1.47623 * 120.00175 * 359.48216 * 16 15 14 19 19 C 1.39896 * 120.17455 * 89.71918 * 18 16 15 20 20 F 1.35097 * 120.10755 * 0.02562 * 19 18 16 21 21 C 1.38245 * 119.78599 * 179.72865 * 19 18 16 22 22 C 1.38286 * 120.15412 * 0.57415 * 21 19 18 23 23 C 1.38344 * 120.36501 * 359.70052 * 22 21 19 24 24 C 1.38075 * 120.20375 * 0.02562 * 23 22 21 25 25 Cl 1.73595 * 120.07800 * 180.02562 * 24 23 22 26 26 C 1.46810 * 90.75747 * 333.74484 * 15 14 12 27 27 H 1.09000 * 111.56918 * 274.85030 * 26 15 14 28 28 C 1.45683 * 119.89137 * 150.55404 * 9 7 2 29 29 H 0.97005 * 120.00170 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.75328 * 356.95953 * 10 9 7 31 31 H 1.08999 * 109.75422 * 117.70024 * 10 9 7 32 32 H 1.09003 * 109.47433 * 61.02044 * 11 10 9 33 33 H 1.09000 * 109.47283 * 181.02588 * 11 10 9 34 34 H 1.09000 * 113.82386 * 23.73296 * 14 12 11 35 35 H 1.09004 * 113.82374 * 155.17555 * 14 12 11 36 36 H 1.08000 * 119.91579 * 180.32215 * 21 19 18 37 37 H 1.08004 * 119.81370 * 179.72065 * 22 21 19 38 38 H 1.07995 * 119.89672 * 180.02562 * 23 22 21 39 39 H 1.09004 * 108.71484 * 19.75960 * 28 9 7 40 40 H 1.08997 * 108.71590 * 261.73806 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3890 2.1092 -1.3944 5 1 1.5061 2.6189 0.8059 6 1 3.5978 1.4112 0.5886 7 6 2.0103 -1.2021 -0.0005 8 1 1.5263 -2.1053 0.3411 9 7 3.3085 -1.2430 -0.4341 10 6 3.7701 -0.2913 -1.4495 11 6 4.3166 -1.0915 -2.6347 12 6 5.4454 -1.9961 -2.1701 13 1 6.4100 -1.4886 -2.1628 14 6 5.4261 -3.3534 -2.9111 15 7 4.5708 -3.8124 -1.8230 16 6 3.6301 -4.7706 -1.7069 17 8 3.0661 -4.9430 -0.6437 18 6 3.2846 -5.6107 -2.8705 19 6 3.9751 -6.8045 -3.1057 20 9 4.9609 -7.1935 -2.2679 21 6 3.6411 -7.5879 -4.1947 22 6 2.6360 -7.1878 -5.0561 23 6 1.9530 -6.0056 -4.8328 24 6 2.2704 -5.2145 -3.7466 25 17 1.4108 -3.7321 -3.4691 26 6 5.1578 -2.8183 -0.9162 27 1 6.0757 -3.1865 -0.4578 28 6 4.2264 -2.2323 0.1145 29 1 -0.4851 0.8401 -0.0004 30 1 2.9369 0.3304 -1.7774 31 1 4.5582 0.3369 -1.0344 32 1 3.5220 -1.7092 -3.0534 33 1 4.6839 -0.4054 -3.3979 34 1 4.9259 -3.3195 -3.8790 35 1 6.3969 -3.8474 -2.9504 36 1 4.1692 -8.5125 -4.3753 37 1 2.3827 -7.8019 -5.9077 38 1 1.1691 -5.7007 -5.5101 39 1 3.6451 -3.0397 0.5598 40 1 4.8219 -1.7612 0.8965 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084791124.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:56 Heat of formation + Delta-G solvation = -8.217723 kcal Electronic energy + Delta-G solvation = -28256.811129 eV Core-core repulsion = 24206.386672 eV Total energy + Delta-G solvation = -4050.424457 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.18805 -42.17087 -40.35828 -38.93659 -37.55675 -37.34340 -34.00303 -32.87569 -32.64383 -31.61506 -30.46886 -28.78102 -25.69901 -25.51996 -24.38126 -23.90021 -22.86128 -21.66348 -19.66538 -19.10322 -18.61610 -18.10075 -17.95574 -17.46583 -17.23848 -16.86080 -16.68412 -16.21659 -15.80212 -15.56667 -15.30067 -15.04502 -14.77918 -14.56210 -14.47367 -14.31821 -14.07425 -13.97933 -13.52713 -13.19521 -12.90290 -12.75477 -12.72017 -12.62138 -12.51105 -12.30913 -12.21698 -12.01776 -11.54581 -11.45629 -11.37079 -10.74602 -10.73043 -10.15795 -9.89465 -9.69539 -8.87007 -8.15236 -5.47785 -0.31816 -0.15300 0.95394 1.28280 1.40725 1.42907 1.51662 1.76719 2.25937 2.41919 2.95693 3.04252 3.17225 3.30396 3.38703 3.69432 3.77771 3.87440 4.02330 4.07972 4.20738 4.25055 4.34359 4.44945 4.49585 4.54921 4.60722 4.71307 4.78211 4.84696 4.86885 4.97290 4.99795 5.03469 5.07986 5.16010 5.21396 5.54406 5.56659 5.91310 6.13947 6.68111 6.97284 7.01131 7.66711 8.00451 9.05778 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.016439 B = 0.004806 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.893581 B = 5824.744084 C = 6498.836528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.037 4.037 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.313 1.313 6 H -0.254 1.254 7 C -0.237 4.237 8 H 0.019 0.981 9 N -0.605 5.605 10 C 0.123 3.877 11 C -0.118 4.118 12 C -0.093 4.093 13 H 0.139 0.861 14 C 0.106 3.894 15 N -0.622 5.622 16 C 0.579 3.421 17 O -0.577 6.577 18 C -0.171 4.171 19 C 0.122 3.878 20 F -0.137 7.137 21 C -0.135 4.135 22 C -0.042 4.042 23 C -0.116 4.116 24 C -0.009 4.009 25 Cl -0.056 7.056 26 C 0.121 3.879 27 H 0.120 0.880 28 C 0.143 3.857 29 H 0.260 0.740 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.184 0.816 37 H 0.199 0.801 38 H 0.168 0.832 39 H 0.034 0.966 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.529 -13.094 -18.135 27.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.231 4.231 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.242 1.242 6 H -0.178 1.178 7 C -0.367 4.367 8 H 0.037 0.963 9 N -0.329 5.329 10 C -0.002 4.002 11 C -0.157 4.157 12 C -0.111 4.111 13 H 0.156 0.844 14 C -0.015 4.015 15 N -0.355 5.355 16 C 0.368 3.632 17 O -0.457 6.457 18 C -0.175 4.175 19 C 0.102 3.898 20 F -0.116 7.116 21 C -0.153 4.153 22 C -0.060 4.060 23 C -0.135 4.135 24 C -0.036 4.036 25 Cl -0.027 7.027 26 C 0.018 3.982 27 H 0.137 0.863 28 C 0.017 3.983 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.139 0.861 36 H 0.201 0.799 37 H 0.216 0.784 38 H 0.186 0.814 39 H 0.052 0.948 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.954 -13.134 -17.474 26.485 hybrid contribution -0.685 0.912 1.211 1.664 sum 14.269 -12.222 -16.263 24.848 Atomic orbital electron populations 1.70039 1.07817 1.27117 1.55816 1.25974 0.95833 1.01231 1.00072 0.85716 0.78986 0.79178 0.77630 1.19567 1.24211 1.17820 1.18565 0.87408 0.92513 1.38200 0.96281 1.43791 1.07644 1.37062 1.44402 1.21303 0.97267 0.91986 0.89598 1.21646 0.97386 0.98748 0.97927 1.22645 1.00932 0.94607 0.92946 0.84359 1.23464 0.94713 0.91868 0.91497 1.49520 1.36368 1.32504 1.17139 1.17882 0.79281 0.78932 0.87152 1.90800 1.53883 1.70096 1.30893 1.19830 1.01430 0.98073 0.98215 1.17775 0.87898 0.92984 0.91131 1.91516 1.59103 1.90330 1.70625 1.21645 0.99994 1.01171 0.92479 1.21675 0.91410 0.93985 0.98941 1.21531 1.01755 0.94660 0.95552 1.21136 0.94680 0.91029 0.96782 1.98516 1.75451 1.32816 1.95922 1.22657 0.95250 0.86524 0.93817 0.86285 1.20206 0.91982 0.91676 0.94419 0.93103 0.93637 0.93377 0.93658 0.88346 0.89774 0.86129 0.79851 0.78439 0.81410 0.94772 0.94435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.43 13.97 21.65 0.30 -64.13 16 2 C -0.04 -2.31 5.18 84.86 0.44 -1.87 16 3 Si 0.96 48.18 24.44 68.60 1.68 49.86 16 4 H -0.27 -12.53 6.71 99.48 0.67 -11.86 16 5 H -0.31 -16.09 7.11 99.48 0.71 -15.38 16 6 H -0.25 -12.00 6.73 99.48 0.67 -11.33 16 7 C -0.24 -14.80 9.94 84.03 0.84 -13.96 16 8 H 0.02 1.42 8.02 -2.91 -0.02 1.39 16 9 N -0.60 -30.38 2.74 -707.79 -1.94 -32.32 16 10 C 0.12 5.14 4.19 86.39 0.36 5.50 16 11 C -0.12 -3.73 5.68 30.28 0.17 -3.56 16 12 C -0.09 -2.26 4.30 -10.63 -0.05 -2.30 16 13 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 14 C 0.11 2.34 7.83 86.71 0.68 3.02 16 15 N -0.62 -20.93 3.27 -848.96 -2.78 -23.71 16 16 C 0.58 23.44 6.11 86.72 0.53 23.97 16 17 O -0.58 -30.10 16.24 -3.96 -0.06 -30.17 16 18 C -0.17 -5.46 5.35 -20.03 -0.11 -5.57 16 19 C 0.12 3.04 7.29 22.67 0.17 3.21 16 20 F -0.14 -3.77 16.83 44.97 0.76 -3.01 16 21 C -0.13 -1.92 10.01 22.28 0.22 -1.70 16 22 C -0.04 -0.46 10.03 22.31 0.22 -0.24 16 23 C -0.12 -2.10 9.81 22.26 0.22 -1.89 16 24 C -0.01 -0.25 6.35 22.60 0.14 -0.11 16 25 Cl -0.06 -2.13 28.04 -2.72 -0.08 -2.21 16 26 C 0.12 3.87 4.30 43.74 0.19 4.06 16 27 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 28 C 0.14 6.30 6.18 85.81 0.53 6.83 16 29 H 0.26 16.42 8.31 -92.70 -0.77 15.65 16 30 H 0.05 2.15 4.50 -2.39 -0.01 2.14 16 31 H 0.05 1.83 7.30 -2.39 -0.02 1.81 16 32 H 0.04 1.68 7.66 -2.39 -0.02 1.66 16 33 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.08 1.78 7.97 -2.39 -0.02 1.76 16 35 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.20 0.22 8.06 -2.91 -0.02 0.19 16 38 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.03 1.81 6.34 -2.38 -0.02 1.79 16 40 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -91.67 343.63 3.43 -88.24 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: 1.00 Total: 2.06 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 4.56 Total: 15.38 kcal Atomic # 7 Polarization: -115.74 SS G_CDS: -4.42 Total: -120.16 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.06 Total: -30.17 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.76 Total: -3.01 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 1.68 Total: 49.86 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.08 Total: -2.21 kcal Total: -91.67 3.43 -88.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084791124.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.022 kcal (2) G-P(sol) polarization free energy of solvation -91.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds