Wall clock time and date at job start Tue Mar 31 2020 20:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00050 * 2 1 4 4 H 1.48491 * 109.47057 * 84.54961 * 3 2 1 5 5 H 1.48502 * 109.47202 * 324.54530 * 3 2 1 6 6 H 1.48503 * 109.47009 * 204.54980 * 3 2 1 7 7 C 1.38808 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99974 * 324.97852 * 7 2 1 9 9 N 1.36936 * 120.00462 * 144.97630 * 7 2 1 10 10 C 1.46622 * 119.89017 * 332.36803 * 9 7 2 11 11 C 1.51530 * 108.50898 * 236.94312 * 10 9 7 12 12 C 1.53014 * 110.10456 * 301.88190 * 11 10 9 13 13 H 1.08998 * 113.42385 * 274.11125 * 12 11 10 14 14 C 1.54648 * 111.40981 * 143.24874 * 12 11 10 15 15 N 1.47816 * 85.79326 * 270.17941 * 14 12 11 16 16 C 1.34776 * 135.00893 * 153.82753 * 15 14 12 17 17 O 1.21586 * 119.99505 * 175.34728 * 16 15 14 18 18 C 1.47642 * 120.00434 * 355.34171 * 16 15 14 19 19 C 1.39702 * 120.12475 * 28.65669 * 18 16 15 20 20 C 1.37782 * 119.88789 * 179.76459 * 19 18 16 21 21 C 1.38721 * 120.15774 * 0.51043 * 20 19 18 22 22 F 1.35095 * 119.87029 * 179.76666 * 21 20 19 23 23 C 1.38569 * 120.26074 * 359.73712 * 21 20 19 24 24 C 1.38027 * 120.10481 * 0.02562 * 23 21 20 25 25 Cl 1.73599 * 120.07774 * 180.02562 * 24 23 21 26 26 C 1.46820 * 89.97445 * 333.81147 * 15 14 12 27 27 H 1.09005 * 110.90511 * 274.54430 * 26 15 14 28 28 C 1.45684 * 119.89048 * 152.62699 * 9 7 2 29 29 H 0.96994 * 119.99718 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.75075 * 356.95051 * 10 9 7 31 31 H 1.08998 * 109.75548 * 117.69420 * 10 9 7 32 32 H 1.09001 * 109.89746 * 181.21928 * 11 10 9 33 33 H 1.08991 * 108.39183 * 61.61187 * 11 10 9 34 34 H 1.09006 * 113.82585 * 24.39636 * 14 12 11 35 35 H 1.09002 * 113.82137 * 155.96722 * 14 12 11 36 36 H 1.07996 * 120.05820 * 0.02562 * 19 18 16 37 37 H 1.07996 * 119.92300 * 180.23076 * 20 19 18 38 38 H 1.07996 * 119.94651 * 180.02562 * 23 21 20 39 39 H 1.08990 * 108.72084 * 261.75392 * 28 9 7 40 40 H 1.09005 * 108.71255 * 19.90364 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3826 2.1129 1.3937 5 1 1.5101 2.6167 -0.8121 6 1 3.6007 1.4096 -0.5817 7 6 2.0103 -1.2021 -0.0005 8 1 1.6169 -2.0531 0.5359 9 7 3.1937 -1.3093 -0.6812 10 6 3.4438 -0.4601 -1.8499 11 6 3.7438 -1.3523 -3.0374 12 6 4.9495 -2.2441 -2.7340 13 1 5.9058 -1.7693 -2.9533 14 6 4.7787 -3.6529 -3.3487 15 7 4.1336 -4.0141 -2.0687 16 6 3.2222 -4.9301 -1.6858 17 8 2.9360 -5.0482 -0.5100 18 6 2.5710 -5.7900 -2.6940 19 6 3.2412 -6.1156 -3.8758 20 6 2.6308 -6.9224 -4.8112 21 6 1.3490 -7.4030 -4.5868 22 9 0.7543 -8.1898 -5.5100 23 6 0.6765 -7.0798 -3.4192 24 6 1.2796 -6.2764 -2.4726 25 17 0.4366 -5.8725 -1.0097 26 6 4.8978 -2.9617 -1.3874 27 1 5.8806 -3.3263 -1.0884 28 6 4.1976 -2.2706 -0.2449 29 1 -0.4849 0.8400 0.0004 30 1 2.5640 0.1487 -2.0580 31 1 4.3021 0.1844 -1.6601 32 1 3.9549 -0.7423 -3.9158 33 1 2.8701 -1.9751 -3.2290 34 1 4.1044 -3.6809 -4.2047 35 1 5.7202 -4.1717 -3.5289 36 1 4.2375 -5.7391 -4.0540 37 1 3.1498 -7.1775 -5.7233 38 1 -0.3211 -7.4571 -3.2495 39 1 4.9417 -1.7502 0.3579 40 1 3.7130 -3.0258 0.3740 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084809652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:24 Heat of formation + Delta-G solvation = 25.416876 kcal Electronic energy + Delta-G solvation = -27711.264385 eV Core-core repulsion = 23662.298434 eV Total energy + Delta-G solvation = -4048.965951 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.25721 -40.87651 -39.29921 -37.41721 -36.31807 -35.52432 -32.13734 -31.44688 -31.18204 -30.95000 -28.85390 -27.31037 -24.17478 -23.94428 -23.29319 -22.79043 -21.27240 -20.37673 -18.39127 -17.84789 -17.36495 -16.82193 -16.59292 -15.97481 -15.69252 -15.48265 -15.16001 -14.94978 -14.31146 -14.17866 -13.92964 -13.74099 -13.66407 -13.40538 -12.98292 -12.83571 -12.71701 -12.48567 -12.22169 -11.78692 -11.63472 -11.54668 -11.35139 -11.10628 -10.92574 -10.74102 -10.63099 -10.23382 -9.97777 -9.79043 -9.31325 -9.28720 -9.18377 -8.88722 -8.47883 -8.26828 -6.90835 -5.94048 -3.14963 0.46743 0.78052 2.10535 2.75694 2.91683 3.43300 3.52005 3.55519 3.59852 3.87280 4.30688 4.37539 4.49947 4.56237 4.63517 4.87533 4.95643 5.00197 5.11132 5.18573 5.31145 5.36827 5.43581 5.53468 5.55967 5.65049 5.71198 5.78052 5.81176 5.93713 6.03892 6.25491 6.33654 6.37869 6.40206 6.63937 6.79025 6.82984 7.02265 7.95882 8.08006 8.43634 8.45298 9.07967 9.83291 10.18881 11.20828 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.004299 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.751851 B = 6511.895681 C = 7358.213233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.036 3.964 3 Si 0.835 3.165 4 H -0.295 1.295 5 H -0.297 1.297 6 H -0.254 1.254 7 C -0.262 4.262 8 H 0.080 0.920 9 N -0.591 5.591 10 C 0.145 3.855 11 C -0.122 4.122 12 C -0.106 4.106 13 H 0.090 0.910 14 C 0.089 3.911 15 N -0.625 5.625 16 C 0.581 3.419 17 O -0.503 6.503 18 C -0.123 4.123 19 C -0.053 4.053 20 C -0.161 4.161 21 C 0.129 3.871 22 F -0.131 7.131 23 C -0.157 4.157 24 C 0.038 3.962 25 Cl -0.008 7.008 26 C 0.135 3.865 27 H 0.081 0.919 28 C 0.141 3.859 29 H 0.260 0.740 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.151 0.849 39 H 0.024 0.976 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.655 -13.017 -12.867 20.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.164 4.164 3 Si 0.662 3.338 4 H -0.223 1.223 5 H -0.224 1.224 6 H -0.179 1.179 7 C -0.389 4.389 8 H 0.098 0.902 9 N -0.314 5.314 10 C 0.020 3.980 11 C -0.161 4.161 12 C -0.125 4.125 13 H 0.109 0.891 14 C -0.034 4.034 15 N -0.362 5.362 16 C 0.369 3.631 17 O -0.378 6.378 18 C -0.127 4.127 19 C -0.072 4.072 20 C -0.180 4.180 21 C 0.109 3.891 22 F -0.110 7.110 23 C -0.177 4.177 24 C 0.010 3.990 25 Cl 0.022 6.978 26 C 0.032 3.968 27 H 0.098 0.902 28 C 0.015 3.985 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.169 0.831 39 H 0.042 0.958 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.066 -13.162 -12.011 19.992 hybrid contribution 0.177 0.819 -0.127 0.847 sum 9.243 -12.343 -12.138 19.624 Atomic orbital electron populations 1.70110 1.06156 1.26524 1.49844 1.25184 0.94781 0.97267 0.99178 0.87627 0.82241 0.86144 0.77768 1.22323 1.22366 1.17900 1.18801 0.94583 0.96317 1.29222 0.90197 1.43767 1.16925 1.41720 1.29004 1.20919 0.99017 0.92102 0.86010 1.21652 0.96206 0.98765 0.99477 1.22859 1.00187 0.94330 0.95140 0.89143 1.23704 0.96692 0.94478 0.88538 1.49654 1.40470 1.33884 1.12177 1.17365 0.79252 0.78836 0.87622 1.90864 1.62032 1.67474 1.17398 1.19972 0.94405 1.01751 0.96576 1.21285 1.00083 0.94999 0.90805 1.21116 0.94184 1.00868 1.01797 1.17647 0.91843 0.92585 0.87033 1.91532 1.83628 1.71518 1.64296 1.20974 1.02200 1.01508 0.92987 1.20785 0.92152 0.95612 0.90489 1.98486 1.75860 1.91583 1.31897 1.22403 0.93622 0.85137 0.95684 0.90158 1.20209 0.92067 0.93104 0.93157 0.93003 0.91325 0.95481 0.92237 0.91537 0.90003 0.89822 0.83612 0.83696 0.83093 0.95798 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.39 13.97 55.49 0.78 -26.62 16 2 C 0.04 1.05 4.84 -17.43 -0.08 0.96 16 3 Si 0.83 21.26 26.37 -169.99 -4.48 16.78 16 4 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 5 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.25 -6.01 4.86 56.52 0.27 -5.73 16 7 C -0.26 -7.48 9.80 -15.06 -0.15 -7.62 16 8 H 0.08 2.56 8.00 -52.48 -0.42 2.14 16 9 N -0.59 -14.03 2.74 -176.02 -0.48 -14.51 16 10 C 0.15 3.04 4.23 -4.72 -0.02 3.02 16 11 C -0.12 -1.98 5.60 -27.47 -0.15 -2.13 16 12 C -0.11 -1.38 4.38 -89.97 -0.39 -1.77 16 13 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 14 C 0.09 0.94 5.73 -3.00 -0.02 0.93 16 15 N -0.63 -9.58 3.36 -175.15 -0.59 -10.17 16 16 C 0.58 10.26 7.52 -12.42 -0.09 10.16 16 17 O -0.50 -10.78 13.93 5.29 0.07 -10.70 16 18 C -0.12 -1.80 5.82 -104.94 -0.61 -2.41 16 19 C -0.05 -0.56 8.66 -39.20 -0.34 -0.90 16 20 C -0.16 -1.50 10.01 -39.57 -0.40 -1.89 16 21 C 0.13 1.40 7.31 -39.28 -0.29 1.11 16 22 F -0.13 -1.40 17.26 2.25 0.04 -1.36 16 23 C -0.16 -1.91 9.79 -39.54 -0.39 -2.30 16 24 C 0.04 0.57 6.33 -39.09 -0.25 0.32 16 25 Cl -0.01 -0.14 26.46 -51.86 -1.37 -1.52 16 26 C 0.13 2.09 4.22 -69.59 -0.29 1.80 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 C 0.14 2.87 6.19 -5.60 -0.03 2.84 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.07 1.60 5.40 -51.93 -0.28 1.32 16 31 H 0.03 0.55 6.78 -51.93 -0.35 0.20 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.23 7.75 -51.93 -0.40 0.83 16 34 H 0.08 0.80 7.21 -51.93 -0.37 0.43 16 35 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.15 1.18 5.67 -52.49 -0.30 0.88 16 37 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 1.85 6.37 -51.93 -0.33 1.52 16 LS Contribution 335.87 15.07 5.06 5.06 Total: -1.00 -34.07 335.87 -9.16 -43.23 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -4.68 Total: -2.30 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -3.51 Total: 2.11 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.30 Total: -51.30 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.70 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.48 Total: 16.78 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.37 Total: -1.52 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.07 -9.16 -43.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084809652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.650 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds