Wall clock time and date at job start Tue Mar 31 2020 21:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86797 * 119.99884 * 2 1 4 4 H 1.48501 * 109.47348 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47452 * 299.99892 * 3 2 1 6 6 H 1.48503 * 109.47341 * 60.00031 * 3 2 1 7 7 C 1.38814 * 120.00489 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00346 * 180.02562 * 7 2 1 9 9 N 1.36948 * 119.99585 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99798 * 179.97438 * 9 7 2 11 11 C 1.53781 * 113.61383 * 155.00021 * 10 9 7 12 12 C 1.53779 * 87.08138 * 89.11600 * 11 10 9 13 13 C 1.52993 * 113.61638 * 139.98094 * 12 11 10 14 14 N 1.46497 * 109.47686 * 176.52926 * 13 12 11 15 15 C 1.34771 * 120.00542 * 180.02562 * 14 13 12 16 16 O 1.21777 * 119.99827 * 0.02562 * 15 14 13 17 17 C 1.41714 * 120.00207 * 180.02562 * 15 14 13 18 18 S 1.75653 * 125.10294 * 359.97234 * 17 15 14 19 19 C 1.75561 * 91.21430 * 179.97438 * 18 17 15 20 20 C 1.34203 * 110.67785 * 359.96894 * 19 18 17 21 21 C 1.37155 * 125.10236 * 180.02562 * 17 15 14 22 22 O 1.37658 * 124.48752 * 0.33192 * 21 17 15 23 23 C 1.43315 * 114.54923 * 163.36726 * 22 21 17 24 24 C 1.53219 * 109.18983 * 46.34846 * 23 22 21 25 25 O 1.38242 * 124.14446 * 180.22240 * 20 19 18 26 26 C 1.53781 * 87.17501 * 25.39054 * 12 11 10 27 27 H 0.97001 * 120.00551 * 359.97438 * 1 2 3 28 28 H 0.96997 * 119.99698 * 0.02562 * 9 7 2 29 29 H 1.09005 * 112.84950 * 23.80225 * 10 9 7 30 30 H 1.09005 * 113.61137 * 334.56960 * 11 10 9 31 31 H 1.08995 * 113.61210 * 203.66759 * 11 10 9 32 32 H 1.08998 * 113.61524 * 270.80452 * 12 11 10 33 33 H 1.09001 * 109.47149 * 56.52790 * 13 12 11 34 34 H 1.09006 * 109.47263 * 296.53048 * 13 12 11 35 35 H 0.97004 * 119.99467 * 0.02562 * 14 13 12 36 36 H 1.07998 * 124.65809 * 179.97438 * 19 18 17 37 37 H 1.08999 * 109.43893 * 286.47193 * 23 22 21 38 38 H 1.08998 * 109.61711 * 166.33589 * 23 22 21 39 39 H 1.09005 * 109.52305 * 177.90129 * 24 23 22 40 40 H 1.08995 * 109.52370 * 57.70915 * 24 23 22 41 41 H 1.09004 * 113.61592 * 89.15023 * 26 12 11 42 42 H 1.08992 * 113.61804 * 220.05996 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.2602 -4.8293 0.5917 12 6 0.7205 -5.0784 -0.8266 13 6 0.6197 -6.5605 -1.1925 14 7 0.0212 -6.6956 -2.5228 15 6 -0.1676 -7.9189 -3.0558 16 8 0.1590 -8.9121 -2.4315 17 6 -0.7460 -8.0495 -4.3429 18 16 -1.2653 -6.7128 -5.3573 19 6 -1.7866 -7.8209 -6.6152 20 6 -1.5634 -9.0926 -6.2488 21 6 -0.9854 -9.2386 -4.9831 22 8 -0.7006 -10.4783 -4.4568 23 6 -1.3598 -11.5692 -5.1121 24 6 -1.2196 -11.4043 -6.6290 25 8 -1.8653 -10.1903 -7.0329 26 6 1.9978 -4.4003 -1.3495 27 1 -0.4851 0.8400 0.0004 28 1 0.3556 -2.3881 -0.0023 29 1 3.0657 -3.5641 0.4028 30 1 0.4938 -4.5201 1.3025 31 1 1.8871 -5.6374 0.9685 32 1 -0.1910 -4.5242 -1.0505 33 1 -0.0031 -7.0741 -0.4600 34 1 1.6161 -7.0026 -1.1958 35 1 -0.2393 -5.9044 -3.0200 36 1 -2.2265 -7.5206 -7.5547 37 1 -2.4157 -11.5700 -4.8418 38 1 -0.9041 -12.5103 -4.8042 39 1 -1.6870 -12.2508 -7.1321 40 1 -0.1634 -11.3595 -6.8944 41 1 2.8268 -5.0910 -1.5043 42 1 1.8262 -3.7453 -2.2036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091308177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:28 Heat of formation + Delta-G solvation = -34.395352 kcal Electronic energy + Delta-G solvation = -26073.858516 eV Core-core repulsion = 22147.802923 eV Total energy + Delta-G solvation = -3926.055593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.41946 -39.75483 -38.47881 -37.36260 -35.98814 -34.59688 -33.20507 -30.68675 -30.22788 -29.85163 -27.42938 -25.07235 -24.88983 -24.15075 -23.59120 -21.79754 -21.17907 -19.64668 -19.42646 -18.31938 -17.68960 -17.38030 -17.08347 -16.73978 -15.90570 -15.60933 -15.20500 -15.14603 -15.07778 -14.72763 -14.64835 -14.11790 -14.01982 -13.57543 -13.54066 -13.32359 -12.98382 -12.86699 -12.25084 -11.90636 -11.68937 -11.48703 -11.44238 -11.32542 -11.15710 -11.03648 -10.86110 -10.47628 -10.19892 -10.12020 -9.82261 -9.69405 -9.46759 -9.10078 -8.89850 -8.80581 -8.34363 -7.00072 -5.81140 -3.10033 0.07483 0.99540 1.23125 1.82287 2.82851 3.02790 3.17182 3.21072 3.41294 3.47411 3.49417 3.72247 4.12267 4.39827 4.44813 4.55558 4.82153 4.90152 4.92445 5.04739 5.07906 5.08765 5.16324 5.25788 5.45520 5.56246 5.64777 5.72900 5.88774 5.97815 6.12291 6.22835 6.23460 6.38490 6.42239 6.60174 6.67109 6.75640 6.91134 7.05249 7.47740 7.69504 8.18439 8.38087 9.48861 10.06584 10.40799 11.41353 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.022195 B = 0.002172 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.214429 B =12888.061478 C =13836.999528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.168 3.832 11 C -0.147 4.147 12 C -0.121 4.121 13 C 0.133 3.867 14 N -0.722 5.722 15 C 0.588 3.412 16 O -0.523 6.523 17 C -0.279 4.279 18 S 0.223 5.777 19 C -0.211 4.211 20 C 0.031 3.969 21 C 0.127 3.873 22 O -0.260 6.260 23 C 0.012 3.988 24 C 0.018 3.982 25 O -0.291 6.291 26 C -0.169 4.169 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.398 0.602 36 H 0.183 0.817 37 H 0.079 0.921 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.740 -22.872 -14.756 27.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.140 4.140 13 C 0.011 3.989 14 N -0.374 5.374 15 C 0.375 3.625 16 O -0.402 6.402 17 C -0.399 4.399 18 S 0.486 5.514 19 C -0.348 4.348 20 C -0.025 4.025 21 C 0.065 3.935 22 O -0.172 6.172 23 C -0.064 4.064 24 C -0.059 4.059 25 O -0.207 6.207 26 C -0.210 4.210 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.232 0.768 36 H 0.200 0.800 37 H 0.097 0.903 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.364 -21.883 -14.099 26.395 hybrid contribution -0.159 -0.487 -0.658 0.834 sum -4.523 -22.371 -14.757 27.179 Atomic orbital electron populations 1.69664 1.05125 1.25658 1.57591 1.24763 0.95546 0.97789 1.02849 0.86102 0.78823 0.83994 0.77177 1.20501 1.21850 1.21860 1.19340 0.91155 0.83956 1.42748 0.90933 1.42184 1.05694 0.99452 1.87113 1.21093 0.95099 0.85577 0.92712 1.23435 1.00492 0.99692 0.95049 1.22724 0.99643 0.92892 0.98707 1.21493 0.98091 0.97131 0.82230 1.45951 1.63982 1.07285 1.20193 1.15532 0.78985 0.84017 0.83994 1.90875 1.50832 1.36896 1.61554 1.22634 1.19200 0.95768 1.02322 1.84341 1.56875 1.04262 1.05894 1.24993 1.10244 0.93762 1.05803 1.18225 1.05137 0.88805 0.90341 1.18878 0.97705 0.86617 0.90312 1.87182 1.64867 1.11080 1.54119 1.23725 0.99591 0.90651 0.92457 1.23633 0.99650 0.86890 0.95687 1.87049 1.66999 1.15497 1.51158 1.23923 0.95686 0.99635 1.01757 0.93498 0.78111 0.91933 0.91282 0.90418 0.88871 0.91614 0.91360 0.76809 0.80010 0.90255 0.85571 0.85716 0.90350 0.91359 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.57 9.97 -15.05 -0.15 -6.72 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.71 -17.25 5.31 -52.54 -0.28 -17.53 16 10 C 0.17 3.25 4.57 -67.03 -0.31 2.94 16 11 C -0.15 -2.36 7.39 -25.92 -0.19 -2.55 16 12 C -0.12 -1.83 3.62 -89.81 -0.33 -2.16 16 13 C 0.13 1.88 5.50 -4.05 -0.02 1.85 16 14 N -0.72 -9.81 5.54 -63.20 -0.35 -10.16 16 15 C 0.59 8.90 7.59 -14.93 -0.11 8.79 16 16 O -0.52 -9.64 15.86 -11.89 -0.19 -9.83 16 17 C -0.28 -3.60 6.25 -38.65 -0.24 -3.84 16 18 S 0.22 2.09 22.17 -107.50 -2.38 -0.29 16 19 C -0.21 -1.85 11.17 29.31 0.33 -1.53 16 20 C 0.03 0.33 6.55 -40.38 -0.26 0.07 16 21 C 0.13 1.59 6.58 -39.35 -0.26 1.33 16 22 O -0.26 -3.29 9.60 -49.16 -0.47 -3.76 16 23 C 0.01 0.09 7.14 37.27 0.27 0.35 16 24 C 0.02 0.11 7.14 37.27 0.27 0.37 16 25 O -0.29 -2.72 10.77 -35.40 -0.38 -3.10 16 26 C -0.17 -2.81 7.44 -25.82 -0.19 -3.01 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.38 9.94 7.90 -40.82 -0.32 9.62 16 29 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.08 1.09 8.10 -51.93 -0.42 0.66 16 32 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 35 H 0.40 4.80 7.41 -40.82 -0.30 4.49 16 36 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.13 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 1.03 7.92 -51.93 -0.41 0.62 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -34.14 366.20 -9.77 -43.91 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -5.64 Total: 9.67 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -1.30 Total: -4.57 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.10 Total: -54.61 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -1.04 Total: -16.69 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.38 Total: -0.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.14 -9.77 -43.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091308177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.516 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds