Wall clock time and date at job start Tue Mar 31 2020 21:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86797 * 119.99884 * 2 1 4 4 H 1.48501 * 109.47348 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47452 * 299.99892 * 3 2 1 6 6 H 1.48503 * 109.47341 * 60.00031 * 3 2 1 7 7 C 1.38814 * 120.00489 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00346 * 180.02562 * 7 2 1 9 9 N 1.36948 * 119.99585 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99798 * 179.97438 * 9 7 2 11 11 C 1.53781 * 113.61383 * 155.00021 * 10 9 7 12 12 C 1.53779 * 87.08138 * 89.11600 * 11 10 9 13 13 C 1.52993 * 113.61638 * 139.98094 * 12 11 10 14 14 N 1.46497 * 109.47686 * 176.52926 * 13 12 11 15 15 C 1.34771 * 120.00542 * 180.02562 * 14 13 12 16 16 O 1.21777 * 119.99827 * 0.02562 * 15 14 13 17 17 C 1.41714 * 120.00207 * 180.02562 * 15 14 13 18 18 S 1.75653 * 125.10294 * 359.97234 * 17 15 14 19 19 C 1.75561 * 91.21430 * 179.97438 * 18 17 15 20 20 C 1.34203 * 110.67785 * 359.96894 * 19 18 17 21 21 C 1.37155 * 125.10236 * 180.02562 * 17 15 14 22 22 O 1.37658 * 124.48752 * 0.33192 * 21 17 15 23 23 C 1.43315 * 114.54923 * 163.36726 * 22 21 17 24 24 C 1.53219 * 109.18983 * 46.34846 * 23 22 21 25 25 O 1.38242 * 124.14446 * 180.22240 * 20 19 18 26 26 C 1.53781 * 87.17501 * 25.39054 * 12 11 10 27 27 H 0.97001 * 120.00551 * 359.97438 * 1 2 3 28 28 H 0.96997 * 119.99698 * 0.02562 * 9 7 2 29 29 H 1.09005 * 112.84950 * 23.80225 * 10 9 7 30 30 H 1.09005 * 113.61137 * 334.56960 * 11 10 9 31 31 H 1.08995 * 113.61210 * 203.66759 * 11 10 9 32 32 H 1.08998 * 113.61524 * 270.80452 * 12 11 10 33 33 H 1.09001 * 109.47149 * 56.52790 * 13 12 11 34 34 H 1.09006 * 109.47263 * 296.53048 * 13 12 11 35 35 H 0.97004 * 119.99467 * 0.02562 * 14 13 12 36 36 H 1.07998 * 124.65809 * 179.97438 * 19 18 17 37 37 H 1.08999 * 109.43893 * 286.47193 * 23 22 21 38 38 H 1.08998 * 109.61711 * 166.33589 * 23 22 21 39 39 H 1.09005 * 109.52305 * 177.90129 * 24 23 22 40 40 H 1.08995 * 109.52370 * 57.70915 * 24 23 22 41 41 H 1.09004 * 113.61592 * 89.15023 * 26 12 11 42 42 H 1.08992 * 113.61804 * 220.05996 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.2602 -4.8293 0.5917 12 6 0.7205 -5.0784 -0.8266 13 6 0.6197 -6.5605 -1.1925 14 7 0.0212 -6.6956 -2.5228 15 6 -0.1676 -7.9189 -3.0558 16 8 0.1590 -8.9121 -2.4315 17 6 -0.7460 -8.0495 -4.3429 18 16 -1.2653 -6.7128 -5.3573 19 6 -1.7866 -7.8209 -6.6152 20 6 -1.5634 -9.0926 -6.2488 21 6 -0.9854 -9.2386 -4.9831 22 8 -0.7006 -10.4783 -4.4568 23 6 -1.3598 -11.5692 -5.1121 24 6 -1.2196 -11.4043 -6.6290 25 8 -1.8653 -10.1903 -7.0329 26 6 1.9978 -4.4003 -1.3495 27 1 -0.4851 0.8400 0.0004 28 1 0.3556 -2.3881 -0.0023 29 1 3.0657 -3.5641 0.4028 30 1 0.4938 -4.5201 1.3025 31 1 1.8871 -5.6374 0.9685 32 1 -0.1910 -4.5242 -1.0505 33 1 -0.0031 -7.0741 -0.4600 34 1 1.6161 -7.0026 -1.1958 35 1 -0.2393 -5.9044 -3.0200 36 1 -2.2265 -7.5206 -7.5547 37 1 -2.4157 -11.5700 -4.8418 38 1 -0.9041 -12.5103 -4.8042 39 1 -1.6870 -12.2508 -7.1321 40 1 -0.1634 -11.3595 -6.8944 41 1 2.8268 -5.0910 -1.5043 42 1 1.8262 -3.7453 -2.2036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091308177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:27 Heat of formation + Delta-G solvation = -58.301216 kcal Electronic energy + Delta-G solvation = -26074.895152 eV Core-core repulsion = 22147.802923 eV Total energy + Delta-G solvation = -3927.092229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.16014 -40.90678 -39.84796 -38.10837 -36.75699 -35.99650 -34.97443 -32.21473 -31.14402 -30.79707 -28.68156 -26.43043 -26.09909 -25.31941 -24.74363 -23.12662 -22.20474 -20.44862 -20.36951 -19.65205 -19.29281 -18.42467 -18.09293 -17.52583 -16.95900 -16.66321 -16.52382 -16.16953 -15.98023 -15.85836 -15.64659 -15.42377 -15.32667 -14.74472 -14.69878 -14.59538 -14.15135 -13.84570 -13.61770 -13.27652 -12.94549 -12.91278 -12.65468 -12.43461 -12.12951 -12.11653 -12.03988 -12.03670 -11.82243 -11.57721 -11.47661 -11.17555 -10.92199 -10.78539 -10.21394 -9.67850 -9.08815 -8.98318 -7.93893 -5.22021 -0.77099 0.23009 0.47522 1.02378 1.49273 1.49634 1.59671 2.02627 2.10174 2.20419 2.45072 2.57012 3.05104 3.38771 3.51955 3.71754 3.78904 3.82778 3.90922 3.96514 4.03836 4.15177 4.23784 4.33137 4.38644 4.40642 4.50592 4.58216 4.72591 4.75201 4.85446 4.94237 4.99834 5.11867 5.24521 5.35460 5.47159 5.54868 5.58465 5.66904 5.95730 6.29920 6.39288 7.07678 7.34985 8.11982 8.34493 9.29538 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.022195 B = 0.002172 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.214429 B =12888.061478 C =13836.999528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.240 4.240 8 H 0.077 0.923 9 N -0.719 5.719 10 C 0.145 3.855 11 C -0.133 4.133 12 C -0.104 4.104 13 C 0.142 3.858 14 N -0.717 5.717 15 C 0.588 3.412 16 O -0.566 6.566 17 C -0.322 4.322 18 S 0.257 5.743 19 C -0.191 4.191 20 C 0.014 3.986 21 C 0.123 3.877 22 O -0.293 6.293 23 C 0.003 3.997 24 C 0.016 3.984 25 O -0.300 6.300 26 C -0.154 4.154 27 H 0.251 0.749 28 H 0.374 0.626 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.405 0.595 36 H 0.213 0.787 37 H 0.082 0.918 38 H 0.152 0.848 39 H 0.162 0.838 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.436 -23.868 -16.293 29.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.372 4.372 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.035 3.965 11 C -0.172 4.172 12 C -0.123 4.123 13 C 0.019 3.981 14 N -0.369 5.369 15 C 0.377 3.623 16 O -0.448 6.448 17 C -0.442 4.442 18 S 0.521 5.479 19 C -0.329 4.329 20 C -0.042 4.042 21 C 0.061 3.939 22 O -0.206 6.206 23 C -0.072 4.072 24 C -0.059 4.059 25 O -0.216 6.216 26 C -0.195 4.195 27 H 0.060 0.940 28 H 0.207 0.793 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.240 0.760 36 H 0.230 0.770 37 H 0.100 0.900 38 H 0.170 0.830 39 H 0.180 0.820 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.026 -22.905 -15.648 28.030 hybrid contribution -0.243 -0.304 -0.230 0.452 sum -4.269 -23.209 -15.878 28.442 Atomic orbital electron populations 1.69809 1.06526 1.25969 1.59602 1.25538 0.96390 1.01006 1.03852 0.85093 0.78267 0.79952 0.76566 1.19092 1.22070 1.22245 1.19705 0.91526 0.85151 1.40815 0.90547 1.42313 1.05345 1.00543 1.87556 1.21407 0.95088 0.84885 0.95100 1.23339 0.99986 0.98697 0.95207 1.22518 0.98530 0.93380 0.97900 1.21350 0.98290 0.95920 0.82564 1.45881 1.63637 1.07365 1.20015 1.15805 0.78332 0.83586 0.84576 1.90834 1.52928 1.38072 1.62930 1.22597 1.21483 0.97611 1.02487 1.84158 1.56001 1.02785 1.04993 1.25433 1.08075 0.93110 1.06267 1.18280 1.06031 0.89867 0.90010 1.19208 0.97098 0.86611 0.91014 1.87124 1.65714 1.12165 1.55617 1.24086 0.99752 0.90135 0.93228 1.23899 1.00110 0.86837 0.95052 1.87033 1.67463 1.15995 1.51063 1.23755 0.97190 0.99237 0.99298 0.94036 0.79328 0.92088 0.92233 0.87603 0.89953 0.91641 0.91141 0.75954 0.77035 0.89959 0.83041 0.82009 0.90284 0.89086 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.39 13.06 21.65 0.28 -58.11 16 2 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 3 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.24 -13.12 9.97 84.03 0.84 -12.29 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.72 -35.41 5.31 -320.15 -1.70 -37.10 16 10 C 0.15 5.53 4.57 45.58 0.21 5.74 16 11 C -0.13 -4.09 7.39 31.12 0.23 -3.86 16 12 C -0.10 -3.06 3.62 -10.27 -0.04 -3.10 16 13 C 0.14 3.85 5.50 86.38 0.47 4.32 16 14 N -0.72 -19.22 5.54 -472.04 -2.62 -21.83 16 15 C 0.59 17.96 7.59 85.10 0.65 18.61 16 16 O -0.57 -21.31 15.86 11.67 0.19 -21.12 16 17 C -0.32 -8.28 6.25 22.87 0.14 -8.13 16 18 S 0.26 4.49 22.17 -56.49 -1.25 3.23 16 19 C -0.19 -2.95 11.17 66.90 0.75 -2.20 16 20 C 0.01 0.28 6.55 21.75 0.14 0.42 16 21 C 0.12 3.07 6.58 22.42 0.15 3.22 16 22 O -0.29 -7.47 9.60 -90.59 -0.87 -8.34 16 23 C 0.00 0.04 7.14 72.06 0.51 0.55 16 24 C 0.02 0.17 7.14 72.06 0.51 0.68 16 25 O -0.30 -5.02 10.77 -112.99 -1.22 -6.24 16 26 C -0.15 -4.96 7.44 31.18 0.23 -4.72 16 27 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.37 19.73 7.90 -92.71 -0.73 18.99 16 29 H 0.06 2.33 8.10 -2.38 -0.02 2.31 16 30 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.11 2.69 8.10 -2.39 -0.02 2.67 16 32 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.07 1.92 7.88 -2.38 -0.02 1.90 16 35 H 0.40 9.55 7.41 -92.71 -0.69 8.86 16 36 H 0.21 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.15 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.16 0.40 8.14 -2.38 -0.02 0.38 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.09 2.54 7.92 -2.38 -0.02 2.52 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -75.06 366.20 -0.24 -75.29 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: -0.35 Total: 31.12 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 5.27 Total: -4.59 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -4.03 Total: -117.04 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -1.90 Total: -35.70 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 16 Polarization: 4.49 SS G_CDS: -1.25 Total: 3.23 kcal Total: -75.06 -0.24 -75.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091308177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.993 kcal (2) G-P(sol) polarization free energy of solvation -75.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds