Wall clock time and date at job start Tue Mar 31 2020 20:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 120.00456 * 2 1 4 4 H 1.48497 * 109.47198 * 270.00072 * 3 2 1 5 5 H 1.48506 * 109.46870 * 29.99639 * 3 2 1 6 6 H 1.48496 * 109.47522 * 149.99517 * 3 2 1 7 7 C 1.38801 * 119.99448 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00555 * 359.97438 * 7 2 1 9 9 S 1.76203 * 119.99499 * 180.02562 * 7 2 1 10 10 C 1.81010 * 99.99917 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47167 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99843 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99894 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99890 * 179.97438 * 13 11 10 15 15 H 1.08999 * 115.49801 * 9.61876 * 14 13 11 16 16 C 1.53004 * 117.44728 * 224.22943 * 14 13 11 17 17 H 1.09000 * 119.52209 * 4.09653 * 16 14 13 18 18 C 1.54381 * 118.12821 * 160.68509 * 16 14 13 19 19 N 1.48559 * 104.59247 * 87.23320 * 18 16 14 20 20 C 1.38535 * 110.99903 * 200.95741 * 19 18 16 21 21 N 1.32456 * 119.18622 * 295.41710 * 20 19 18 22 22 C 1.32303 * 120.76077 * 179.97438 * 21 20 19 23 23 C 1.38773 * 119.17021 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.74622 * 179.97438 * 23 22 21 25 25 C 1.38785 * 118.50983 * 0.25198 * 23 22 21 26 26 N 1.32298 * 119.16680 * 359.49443 * 25 23 22 27 27 C 1.48556 * 104.22235 * 320.51763 * 19 18 16 28 28 C 1.52998 * 117.44417 * 155.00364 * 14 13 11 29 29 H 1.09004 * 120.23174 * 356.19361 * 28 14 13 30 30 H 0.97005 * 119.99989 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46890 * 59.99906 * 10 9 7 32 32 H 1.09002 * 109.46933 * 300.00012 * 10 9 7 33 33 H 0.96999 * 119.99962 * 0.02562 * 13 11 10 34 34 H 1.08994 * 110.41132 * 328.45116 * 18 16 14 35 35 H 1.09006 * 110.40871 * 206.01266 * 18 16 14 36 36 H 1.08000 * 120.41367 * 180.02562 * 22 21 20 37 37 H 1.08004 * 120.41397 * 179.74602 * 25 23 22 38 38 H 1.09000 * 110.41145 * 158.26264 * 27 19 18 39 39 H 1.09000 * 110.40970 * 280.58728 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7722 -1.2021 0.0001 10 6 4.0865 -2.9847 -0.0001 11 6 5.5729 -3.2328 -0.0002 12 8 6.3439 -2.2965 -0.0006 13 7 6.0455 -4.4949 0.0001 14 6 7.4905 -4.7360 -0.0006 15 1 8.1130 -3.8564 0.1630 16 6 8.0255 -5.8122 -0.9475 17 1 7.3413 -6.3136 -1.6321 18 6 9.5262 -5.7834 -1.3085 19 7 10.1852 -6.5668 -0.2320 20 6 11.5316 -6.2532 -0.1429 21 7 12.3302 -6.5394 -1.1601 22 6 13.6209 -6.2531 -1.1085 23 6 14.1342 -5.6465 0.0292 24 9 15.4473 -5.3406 0.1161 25 6 13.2695 -5.3663 1.0780 26 7 11.9887 -5.6751 0.9577 27 6 9.4629 -6.1688 1.0036 28 6 7.9838 -6.0657 0.5735 29 1 7.2780 -6.7664 1.0197 30 1 -0.4850 0.8401 -0.0004 31 1 3.6439 -3.4315 -0.8904 32 1 3.6432 -3.4319 0.8896 33 1 5.4288 -5.2437 0.0000 34 1 9.8963 -4.7582 -1.3136 35 1 9.6932 -6.2536 -2.2776 36 1 14.2669 -6.4887 -1.9413 37 1 13.6369 -4.8984 1.9794 38 1 9.5822 -6.9292 1.7754 39 1 9.8245 -5.2048 1.3615 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093217350.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:05 Heat of formation + Delta-G solvation = 32.666196 kcal Electronic energy + Delta-G solvation = -24958.791333 eV Core-core repulsion = 20944.476193 eV Total energy + Delta-G solvation = -4014.315140 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.53301 -41.95321 -40.36601 -38.93141 -35.71815 -34.51519 -33.11466 -32.46827 -30.70668 -29.17859 -29.08047 -25.73282 -25.57242 -25.35682 -22.90088 -21.36058 -20.80536 -20.60469 -18.67802 -18.38266 -17.97401 -17.88431 -17.14002 -16.66145 -16.48347 -15.55514 -15.37252 -15.11021 -15.03134 -15.00699 -14.38276 -14.19188 -13.92532 -13.72433 -13.41823 -13.26565 -12.94223 -12.83141 -12.76447 -12.39397 -12.33923 -11.88449 -11.60009 -11.30279 -11.12119 -11.03189 -10.76627 -10.65559 -10.25548 -9.89758 -9.78272 -9.68126 -9.03962 -8.96299 -8.89596 -8.55176 -6.96334 -6.31895 -4.04341 0.11107 0.32700 2.46287 2.66237 2.68445 2.96481 3.14251 3.25580 3.27829 3.30841 3.47749 3.52387 3.54577 3.98441 4.10905 4.17172 4.22600 4.28837 4.30257 4.51298 4.62927 4.64857 4.82233 4.96254 4.97019 5.07153 5.10688 5.23045 5.44005 5.49443 5.61270 5.65679 5.68832 5.74946 5.80480 5.94484 5.99943 6.37686 6.54664 7.39840 7.43646 7.91029 8.33228 8.38599 9.14035 10.77233 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.025049 B = 0.001868 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.528465 B =14987.676380 C =15662.678202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.089 0.911 9 S -0.140 6.140 10 C -0.124 4.124 11 C 0.537 3.463 12 O -0.514 6.514 13 N -0.706 5.706 14 C 0.130 3.870 15 H 0.136 0.864 16 C -0.179 4.179 17 H 0.129 0.871 18 C 0.083 3.917 19 N -0.438 5.438 20 C 0.478 3.522 21 N -0.497 5.497 22 C 0.153 3.847 23 C -0.037 4.037 24 F -0.121 7.121 25 C 0.153 3.847 26 N -0.522 5.522 27 C 0.076 3.924 28 C -0.173 4.173 29 H 0.128 0.872 30 H 0.271 0.729 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.404 0.596 34 H 0.060 0.940 35 H 0.105 0.895 36 H 0.184 0.816 37 H 0.182 0.818 38 H 0.098 0.902 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.407 -16.697 0.072 31.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.107 0.893 9 S 0.086 5.914 10 C -0.275 4.275 11 C 0.324 3.676 12 O -0.387 6.387 13 N -0.358 5.358 14 C 0.022 3.978 15 H 0.153 0.847 16 C -0.199 4.199 17 H 0.147 0.853 18 C -0.042 4.042 19 N -0.159 5.159 20 C 0.122 3.878 21 N -0.213 5.213 22 C -0.017 4.017 23 C -0.062 4.062 24 F -0.100 7.100 25 C -0.016 4.016 26 N -0.240 5.240 27 C -0.050 4.050 28 C -0.194 4.194 29 H 0.146 0.854 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.239 0.761 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.201 0.799 37 H 0.199 0.801 38 H 0.116 0.884 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 26.452 -15.811 -0.099 30.817 hybrid contribution 0.158 -0.010 0.186 0.245 sum 26.610 -15.821 0.087 30.958 Atomic orbital electron populations 1.69938 1.05902 1.27802 1.47908 1.24716 0.94465 0.98981 0.93158 0.86734 0.81881 0.83281 0.79947 1.19193 1.19906 1.15929 1.22305 0.88162 0.97573 1.58955 0.89322 1.84815 1.09428 0.99686 1.97445 1.23279 0.93391 1.04717 1.06067 1.20349 0.90756 0.81886 0.74646 1.90707 1.58739 1.42071 1.47232 1.45304 1.05252 1.08526 1.76695 1.21611 0.83560 0.93401 0.99186 0.84653 1.24005 0.96373 1.05907 0.93665 0.85292 1.22571 0.90894 0.96150 0.94607 1.62199 0.96908 1.49404 1.07363 1.21343 0.92869 0.88058 0.85499 1.68121 1.03815 1.19883 1.29497 1.23366 0.91276 0.90888 0.96174 1.19382 0.80781 1.07074 0.98956 1.91558 1.30805 1.91198 1.96435 1.23334 0.87565 0.92978 0.97701 1.68485 1.15176 1.13847 1.26530 1.22588 0.89475 1.02599 0.90372 1.23963 0.97531 1.01361 0.96536 0.85396 0.91905 0.88248 0.88183 0.76147 0.92202 0.87650 0.79934 0.80069 0.88384 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.22 13.97 55.49 0.78 -25.45 16 2 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.51 27.74 -169.99 -4.71 16.80 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 7 C -0.52 -14.79 10.04 30.94 0.31 -14.48 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.46 18.55 -107.50 -1.99 -5.46 16 10 C -0.12 -2.28 6.16 36.00 0.22 -2.06 16 11 C 0.54 8.99 7.85 -10.99 -0.09 8.90 16 12 O -0.51 -10.60 15.43 5.56 0.09 -10.51 16 13 N -0.71 -8.26 5.56 -53.81 -0.30 -8.56 16 14 C 0.13 1.38 5.98 -67.93 -0.41 0.97 16 15 H 0.14 1.71 7.40 -51.93 -0.38 1.32 16 16 C -0.18 -1.53 7.05 -89.24 -0.63 -2.16 16 17 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 18 C 0.08 0.74 6.08 -2.18 -0.01 0.73 16 19 N -0.44 -4.17 5.46 -170.95 -0.93 -5.11 16 20 C 0.48 4.73 6.94 -322.72 -2.24 2.49 16 21 N -0.50 -4.64 10.26 -13.87 -0.14 -4.79 16 22 C 0.15 1.03 11.29 -17.15 -0.19 0.84 16 23 C -0.04 -0.24 7.38 -39.18 -0.29 -0.53 16 24 F -0.12 -0.81 17.30 2.25 0.04 -0.77 16 25 C 0.15 1.06 11.29 -17.15 -0.19 0.86 16 26 N -0.52 -4.79 8.42 -13.86 -0.12 -4.90 16 27 C 0.08 0.66 5.70 -2.18 -0.01 0.65 16 28 C -0.17 -1.42 7.05 -89.24 -0.63 -2.05 16 29 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 32 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 33 H 0.40 3.51 8.83 -40.82 -0.36 3.15 16 34 H 0.06 0.57 7.97 -51.93 -0.41 0.16 16 35 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.18 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.18 0.72 8.06 -52.48 -0.42 0.30 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.77 7.11 -51.93 -0.37 0.40 16 LS Contribution 354.55 15.07 5.34 5.34 Total: -1.00 -34.56 354.55 -10.70 -45.26 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.49 Total: 1.32 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -4.25 Total: -3.17 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.72 Total: -48.80 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 9 Polarization: -0.81 SS G_CDS: 0.04 Total: -0.77 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.80 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.46 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.56 -10.70 -45.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093217350.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.923 kcal (2) G-P(sol) polarization free energy of solvation -34.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds