Wall clock time and date at job start Tue Mar 31 2020 20:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 120.00456 * 2 1 4 4 H 1.48497 * 109.47198 * 270.00072 * 3 2 1 5 5 H 1.48506 * 109.46870 * 29.99639 * 3 2 1 6 6 H 1.48496 * 109.47522 * 149.99517 * 3 2 1 7 7 C 1.38801 * 119.99448 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00555 * 359.97438 * 7 2 1 9 9 S 1.76203 * 119.99499 * 180.02562 * 7 2 1 10 10 C 1.81010 * 99.99917 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47167 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99843 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99894 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99890 * 179.97438 * 13 11 10 15 15 H 1.08999 * 115.49801 * 9.61876 * 14 13 11 16 16 C 1.53004 * 117.44728 * 224.22943 * 14 13 11 17 17 H 1.09000 * 119.52209 * 4.09653 * 16 14 13 18 18 C 1.54381 * 118.12821 * 160.68509 * 16 14 13 19 19 N 1.48559 * 104.59247 * 87.23320 * 18 16 14 20 20 C 1.38535 * 110.99903 * 200.95741 * 19 18 16 21 21 N 1.32456 * 119.18622 * 295.41710 * 20 19 18 22 22 C 1.32303 * 120.76077 * 179.97438 * 21 20 19 23 23 C 1.38773 * 119.17021 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.74622 * 179.97438 * 23 22 21 25 25 C 1.38785 * 118.50983 * 0.25198 * 23 22 21 26 26 N 1.32298 * 119.16680 * 359.49443 * 25 23 22 27 27 C 1.48556 * 104.22235 * 320.51763 * 19 18 16 28 28 C 1.52998 * 117.44417 * 155.00364 * 14 13 11 29 29 H 1.09004 * 120.23174 * 356.19361 * 28 14 13 30 30 H 0.97005 * 119.99989 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46890 * 59.99906 * 10 9 7 32 32 H 1.09002 * 109.46933 * 300.00012 * 10 9 7 33 33 H 0.96999 * 119.99962 * 0.02562 * 13 11 10 34 34 H 1.08994 * 110.41132 * 328.45116 * 18 16 14 35 35 H 1.09006 * 110.40871 * 206.01266 * 18 16 14 36 36 H 1.08000 * 120.41367 * 180.02562 * 22 21 20 37 37 H 1.08004 * 120.41397 * 179.74602 * 25 23 22 38 38 H 1.09000 * 110.41145 * 158.26264 * 27 19 18 39 39 H 1.09000 * 110.40970 * 280.58728 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7722 -1.2021 0.0001 10 6 4.0865 -2.9847 -0.0001 11 6 5.5729 -3.2328 -0.0002 12 8 6.3439 -2.2965 -0.0006 13 7 6.0455 -4.4949 0.0001 14 6 7.4905 -4.7360 -0.0006 15 1 8.1130 -3.8564 0.1630 16 6 8.0255 -5.8122 -0.9475 17 1 7.3413 -6.3136 -1.6321 18 6 9.5262 -5.7834 -1.3085 19 7 10.1852 -6.5668 -0.2320 20 6 11.5316 -6.2532 -0.1429 21 7 12.3302 -6.5394 -1.1601 22 6 13.6209 -6.2531 -1.1085 23 6 14.1342 -5.6465 0.0292 24 9 15.4473 -5.3406 0.1161 25 6 13.2695 -5.3663 1.0780 26 7 11.9887 -5.6751 0.9577 27 6 9.4629 -6.1688 1.0036 28 6 7.9838 -6.0657 0.5735 29 1 7.2780 -6.7664 1.0197 30 1 -0.4850 0.8401 -0.0004 31 1 3.6439 -3.4315 -0.8904 32 1 3.6432 -3.4319 0.8896 33 1 5.4288 -5.2437 0.0000 34 1 9.8963 -4.7582 -1.3136 35 1 9.6932 -6.2536 -2.2776 36 1 14.2669 -6.4887 -1.9413 37 1 13.6369 -4.8984 1.9794 38 1 9.5822 -6.9292 1.7754 39 1 9.8245 -5.2048 1.3615 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093217350.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:05 Heat of formation + Delta-G solvation = 9.038211 kcal Electronic energy + Delta-G solvation = -24959.815919 eV Core-core repulsion = 20944.476193 eV Total energy + Delta-G solvation = -4015.339726 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.07286 -42.58794 -41.21632 -40.07291 -36.58586 -35.11422 -34.66885 -34.13275 -31.51770 -30.41877 -29.76438 -27.85854 -26.30933 -25.99995 -23.61440 -22.16727 -21.91083 -21.41097 -19.88358 -19.27197 -18.95563 -18.53057 -18.10314 -17.89381 -17.21277 -17.09111 -16.48424 -16.30048 -15.98970 -15.80109 -15.58622 -15.19266 -14.95333 -14.84508 -14.50445 -14.25387 -14.08568 -13.91296 -13.57267 -13.42801 -13.33428 -13.01887 -13.01651 -12.66085 -12.63492 -12.23457 -11.98340 -11.87195 -11.41801 -11.16769 -11.12306 -10.92843 -10.53394 -10.38261 -9.89654 -9.59220 -8.99302 -8.51083 -6.21855 -0.48419 -0.21697 0.96627 1.31690 1.42587 1.45063 1.52731 1.86601 2.12391 2.25223 2.34317 2.53720 2.70012 2.72714 2.87228 2.91986 3.39156 3.41689 3.55909 3.61457 3.64687 3.77515 3.81286 3.95736 4.16379 4.24000 4.26566 4.45662 4.47545 4.54456 4.67088 4.77765 4.95559 5.01746 5.06897 5.14601 5.36860 5.41305 5.71295 5.91659 6.12382 6.38982 6.78620 6.94186 7.12427 8.61102 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.025049 B = 0.001868 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.528465 B =14987.676380 C =15662.678202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.045 3.955 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.237 1.237 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.177 6.177 10 C -0.110 4.110 11 C 0.542 3.458 12 O -0.560 6.560 13 N -0.680 5.680 14 C 0.106 3.894 15 H 0.111 0.889 16 C -0.164 4.164 17 H 0.147 0.853 18 C 0.084 3.916 19 N -0.443 5.443 20 C 0.461 3.539 21 N -0.516 5.516 22 C 0.152 3.848 23 C -0.032 4.032 24 F -0.119 7.119 25 C 0.149 3.851 26 N -0.539 5.539 27 C 0.077 3.923 28 C -0.150 4.150 29 H 0.152 0.848 30 H 0.277 0.723 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.422 0.578 34 H 0.046 0.954 35 H 0.112 0.888 36 H 0.213 0.787 37 H 0.208 0.792 38 H 0.107 0.893 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.049 -18.110 0.039 33.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.184 1.184 6 H -0.161 1.161 7 C -0.675 4.675 8 H 0.082 0.918 9 S 0.050 5.950 10 C -0.261 4.261 11 C 0.328 3.672 12 O -0.437 6.437 13 N -0.332 5.332 14 C -0.001 4.001 15 H 0.128 0.872 16 C -0.184 4.184 17 H 0.165 0.835 18 C -0.041 4.041 19 N -0.163 5.163 20 C 0.105 3.895 21 N -0.233 5.233 22 C -0.016 4.016 23 C -0.057 4.057 24 F -0.098 7.098 25 C -0.019 4.019 26 N -0.257 5.257 27 C -0.049 4.049 28 C -0.170 4.170 29 H 0.169 0.831 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.260 0.740 34 H 0.064 0.936 35 H 0.130 0.870 36 H 0.230 0.770 37 H 0.225 0.775 38 H 0.125 0.875 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 28.108 -17.285 -0.128 32.998 hybrid contribution -0.199 0.267 0.198 0.387 sum 27.909 -17.018 0.069 32.689 Atomic orbital electron populations 1.70016 1.07264 1.28987 1.49133 1.25559 0.95277 1.02241 0.92971 0.85875 0.80691 0.79690 0.80170 1.18759 1.18441 1.16052 1.22457 0.90186 0.96723 1.58180 0.91758 1.84755 1.06505 1.06157 1.97606 1.23256 0.95252 0.99698 1.07885 1.19980 0.89548 0.82975 0.74654 1.90699 1.59327 1.43798 1.49901 1.44937 1.06321 1.07277 1.74623 1.21572 0.82221 0.93829 1.02504 0.87158 1.24014 0.96255 1.03860 0.94298 0.83501 1.22558 0.91039 0.95520 0.95009 1.62241 0.97092 1.49507 1.07507 1.21482 0.93109 0.88795 0.86087 1.68147 1.04799 1.20717 1.29617 1.23862 0.90816 0.89951 0.97020 1.19379 0.80756 1.06679 0.98909 1.91568 1.30661 1.91138 1.96420 1.23792 0.86970 0.92420 0.98713 1.68504 1.16243 1.14437 1.26536 1.22586 0.89578 1.02264 0.90521 1.23990 0.97496 0.99218 0.96339 0.83081 0.91396 0.86423 0.86381 0.73965 0.93578 0.86975 0.77043 0.77538 0.87503 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.24 13.97 21.65 0.30 -54.94 16 2 C 0.04 2.61 5.50 84.86 0.47 3.08 16 3 Si 0.91 44.58 27.74 68.60 1.90 46.48 16 4 H -0.26 -12.53 7.11 99.48 0.71 -11.83 16 5 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.24 -11.51 6.74 99.48 0.67 -10.84 16 7 C -0.53 -30.19 10.04 67.95 0.68 -29.51 16 8 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 9 S -0.18 -8.72 18.55 -56.49 -1.05 -9.77 16 10 C -0.11 -3.91 6.16 71.23 0.44 -3.47 16 11 C 0.54 17.53 7.85 87.66 0.69 18.22 16 12 O -0.56 -23.11 15.43 -3.04 -0.05 -23.16 16 13 N -0.68 -14.50 5.56 -442.54 -2.46 -16.96 16 14 C 0.11 2.10 5.98 44.99 0.27 2.37 16 15 H 0.11 2.83 7.40 -2.39 -0.02 2.81 16 16 C -0.16 -2.45 7.05 -9.90 -0.07 -2.52 16 17 H 0.15 1.74 8.14 -2.39 -0.02 1.72 16 18 C 0.08 1.41 6.08 86.45 0.53 1.93 16 19 N -0.44 -7.92 5.46 -694.77 -3.80 -11.71 16 20 C 0.46 8.76 6.94 261.46 1.81 10.58 16 21 N -0.52 -9.11 10.26 -197.79 -2.03 -11.14 16 22 C 0.15 1.83 11.29 84.75 0.96 2.79 16 23 C -0.03 -0.38 7.38 22.53 0.17 -0.21 16 24 F -0.12 -1.38 17.30 44.97 0.78 -0.61 16 25 C 0.15 1.88 11.29 84.75 0.96 2.83 16 26 N -0.54 -9.48 8.42 -197.78 -1.66 -11.15 16 27 C 0.08 1.23 5.70 86.45 0.49 1.72 16 28 C -0.15 -2.11 7.05 -9.90 -0.07 -2.18 16 29 H 0.15 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.28 15.44 8.31 -92.70 -0.77 14.67 16 31 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 32 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 33 H 0.42 5.97 8.83 -92.71 -0.82 5.15 16 34 H 0.05 0.89 7.97 -2.39 -0.02 0.87 16 35 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.21 1.04 8.06 -2.91 -0.02 1.02 16 37 H 0.21 1.29 8.06 -2.91 -0.02 1.27 16 38 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.28 7.11 -2.39 -0.02 1.27 16 Total: -1.00 -75.92 354.55 -0.49 -76.41 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.25 Total: 10.90 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 7.32 Total: 5.63 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -9.65 Total: -105.89 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.05 Total: -23.16 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.78 Total: -0.61 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.90 Total: 46.48 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.05 Total: -9.77 kcal Total: -75.92 -0.49 -76.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093217350.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.448 kcal (2) G-P(sol) polarization free energy of solvation -75.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds