Wall clock time and date at job start Tue Mar 31 2020 20:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86793 * 119.99985 * 2 1 4 4 H 1.48504 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47185 * 299.99869 * 3 2 1 6 6 H 1.48495 * 109.47279 * 59.99889 * 3 2 1 7 7 C 1.38799 * 119.99702 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00008 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99694 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46885 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00256 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00100 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99956 * 179.97438 * 13 11 10 15 15 H 1.09000 * 115.49705 * 9.61960 * 14 13 11 16 16 C 1.53001 * 117.44341 * 224.23052 * 14 13 11 17 17 H 1.08997 * 119.52725 * 4.09201 * 16 14 13 18 18 C 1.54378 * 118.12734 * 160.69158 * 16 14 13 19 19 N 1.48559 * 104.59942 * 87.22849 * 18 16 14 20 20 C 1.39119 * 110.99947 * 200.96043 * 19 18 16 21 21 N 1.32557 * 120.10710 * 115.44449 * 20 19 18 22 22 C 1.32313 * 119.94358 * 179.97438 * 21 20 19 23 23 C 1.38064 * 120.16452 * 359.97438 * 22 21 20 24 24 N 1.32354 * 120.21924 * 0.02562 * 23 22 21 25 25 C 1.32066 * 120.05744 * 0.02562 * 24 23 22 26 26 F 1.35096 * 120.08422 * 180.02562 * 25 24 23 27 27 C 1.48557 * 104.22025 * 320.51854 * 19 18 16 28 28 C 1.53001 * 117.44235 * 155.00619 * 14 13 11 29 29 H 1.09005 * 120.23031 * 356.18914 * 28 14 13 30 30 H 0.96999 * 120.00335 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.46950 * 60.00177 * 10 9 7 32 32 H 1.09000 * 109.47395 * 299.99944 * 10 9 7 33 33 H 0.97000 * 120.00224 * 0.02562 * 13 11 10 34 34 H 1.09003 * 110.41118 * 328.44740 * 18 16 14 35 35 H 1.09004 * 110.41050 * 206.00925 * 18 16 14 36 36 H 1.07991 * 119.91942 * 179.97438 * 22 21 20 37 37 H 1.07995 * 119.88791 * 180.28255 * 23 22 21 38 38 H 1.08994 * 110.41437 * 158.26118 * 27 19 18 39 39 H 1.09003 * 110.41117 * 280.70013 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 2.3302 -7.7151 0.0019 15 1 1.2571 -7.8144 -0.1613 16 6 2.9950 -8.7162 0.9489 17 1 3.7716 -8.3744 1.6330 18 6 2.2198 -10.0014 1.3103 19 7 2.5683 -10.9642 0.2339 20 6 1.6194 -11.9776 0.1451 21 7 0.8791 -12.1014 -0.9476 22 6 -0.0221 -13.0667 -1.0288 23 6 -0.1933 -13.9462 0.0216 24 7 0.5423 -13.8286 1.1156 25 6 1.4437 -12.8676 1.2064 26 9 2.1952 -12.7473 2.3226 27 6 2.5843 -10.1399 -1.0018 28 6 3.2348 -8.8073 -0.5722 29 1 4.1944 -8.5466 -1.0189 30 1 -0.4850 0.8400 -0.0004 31 1 3.1243 -3.7314 0.8905 32 1 3.1244 -3.7314 -0.8894 33 1 3.8008 -6.1836 0.0004 34 1 1.1469 -9.8093 1.3158 35 1 2.5439 -10.3809 2.2794 36 1 -0.6252 -13.1670 -1.9190 37 1 -0.9270 -14.7353 -0.0514 38 1 3.1828 -10.6235 -1.7738 39 1 1.5684 -9.9694 -1.3583 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093217518.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:14 Heat of formation + Delta-G solvation = 31.441307 kcal Electronic energy + Delta-G solvation = -25233.746019 eV Core-core repulsion = 21219.377764 eV Total energy + Delta-G solvation = -4014.368255 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.48880 -41.84864 -40.42366 -38.88802 -36.07811 -34.39728 -32.93579 -32.46359 -30.56196 -29.11941 -29.02993 -25.92959 -25.49624 -24.82704 -23.02502 -21.31359 -20.79274 -20.50041 -18.65023 -18.52414 -17.96227 -17.76861 -17.08291 -16.80430 -16.38429 -15.63609 -15.10183 -14.96179 -14.83692 -14.78181 -14.44370 -14.20149 -14.03121 -13.93439 -13.34248 -13.19735 -12.90262 -12.86954 -12.53837 -12.32581 -12.23357 -11.79945 -11.77710 -11.10622 -11.05981 -11.05408 -10.80276 -10.67792 -10.22740 -9.85979 -9.80956 -9.56556 -9.11045 -8.86892 -8.81162 -8.28775 -6.54777 -6.25400 -3.96455 0.06029 0.40248 2.54610 2.75504 2.80685 2.88254 3.15905 3.19382 3.24466 3.29013 3.35347 3.53383 3.64239 3.72111 4.16555 4.22276 4.30582 4.38713 4.44127 4.58409 4.65831 4.82444 4.93127 4.96218 5.01191 5.10106 5.18682 5.41212 5.43847 5.58289 5.60517 5.67965 5.79565 5.81137 5.83206 6.06844 6.30293 6.46801 6.56627 7.02705 7.53027 7.56820 8.31838 8.45407 9.20182 10.82086 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.030978 B = 0.001841 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.661964 B =15206.466426 C =15463.613759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.538 3.462 12 O -0.512 6.512 13 N -0.708 5.708 14 C 0.132 3.868 15 H 0.136 0.864 16 C -0.177 4.177 17 H 0.128 0.872 18 C 0.068 3.932 19 N -0.448 5.448 20 C 0.245 3.755 21 N -0.448 5.448 22 C 0.068 3.932 23 C 0.056 3.944 24 N -0.451 5.451 25 C 0.257 3.743 26 F -0.095 7.095 27 C 0.074 3.926 28 C -0.174 4.174 29 H 0.127 0.873 30 H 0.268 0.732 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.402 0.598 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.182 0.818 37 H 0.182 0.818 38 H 0.097 0.903 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.336 -27.627 -1.261 28.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.325 3.675 12 O -0.385 6.385 13 N -0.360 5.360 14 C 0.024 3.976 15 H 0.153 0.847 16 C -0.198 4.198 17 H 0.146 0.854 18 C -0.057 4.057 19 N -0.166 5.166 20 C 0.008 3.992 21 N -0.167 5.167 22 C -0.092 4.092 23 C -0.102 4.102 24 N -0.171 5.171 25 C 0.096 3.904 26 F -0.074 7.074 27 C -0.052 4.052 28 C -0.195 4.195 29 H 0.145 0.855 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.237 0.763 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.199 0.801 37 H 0.199 0.801 38 H 0.115 0.885 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.736 -28.028 -1.113 28.297 hybrid contribution 2.083 1.438 0.116 2.534 sum 5.819 -26.590 -0.997 27.238 Atomic orbital electron populations 1.70023 1.05960 1.27414 1.46840 1.25002 0.95047 0.99089 0.94496 0.86101 0.79571 0.81803 0.77922 1.19600 1.20548 1.20549 1.22903 0.94955 0.91549 1.58975 0.90804 1.85424 1.04699 0.96379 1.96736 1.23532 1.06793 0.94856 1.05178 1.20389 0.86452 0.86134 0.74548 1.90709 1.15348 1.85435 1.46999 1.45362 1.10041 1.03663 1.76929 1.21609 0.97981 0.79108 0.98937 0.84652 1.23942 1.04362 0.97847 0.93664 0.85367 1.22744 0.99050 0.89158 0.94787 1.62830 1.36700 1.09702 1.07405 1.20796 0.91599 0.96342 0.90476 1.68533 1.04212 1.20732 1.23179 1.23741 0.94819 0.90451 1.00160 1.23505 0.98205 1.00383 0.88157 1.67762 1.04191 1.18613 1.26520 1.18568 0.92962 0.94308 0.84565 1.91661 1.72235 1.94482 1.48995 1.22560 1.02030 0.89948 0.90646 1.23966 1.02513 0.96536 0.96446 0.85529 0.92192 0.88976 0.88951 0.76326 0.91903 0.87823 0.80095 0.80099 0.88485 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.54 -15.01 9.50 30.94 0.29 -14.72 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -2.96 6.16 36.01 0.22 -2.73 16 11 C 0.54 9.57 7.85 -10.99 -0.09 9.48 16 12 O -0.51 -11.19 15.43 5.55 0.09 -11.11 16 13 N -0.71 -8.85 5.56 -53.80 -0.30 -9.15 16 14 C 0.13 1.48 5.98 -67.93 -0.41 1.08 16 15 H 0.14 1.81 7.40 -51.93 -0.38 1.43 16 16 C -0.18 -1.61 7.05 -89.24 -0.63 -2.24 16 17 H 0.13 1.05 8.14 -51.93 -0.42 0.62 16 18 C 0.07 0.62 5.64 -2.18 -0.01 0.61 16 19 N -0.45 -4.30 5.31 -168.54 -0.89 -5.20 16 20 C 0.25 2.43 6.16 -154.59 -0.95 1.47 16 21 N -0.45 -4.01 8.60 -12.17 -0.10 -4.11 16 22 C 0.07 0.40 11.21 -17.41 -0.20 0.21 16 23 C 0.06 0.34 11.21 -17.39 -0.19 0.14 16 24 N -0.45 -4.28 10.50 -13.24 -0.14 -4.42 16 25 C 0.26 2.65 8.19 -16.93 -0.14 2.51 16 26 F -0.09 -1.02 15.87 2.25 0.04 -0.98 16 27 C 0.07 0.67 5.73 -2.18 -0.01 0.65 16 28 C -0.17 -1.52 7.05 -89.24 -0.63 -2.15 16 29 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 32 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 33 H 0.40 3.78 8.83 -40.82 -0.36 3.42 16 34 H 0.06 0.62 7.97 -51.93 -0.41 0.21 16 35 H 0.10 0.89 7.26 -51.93 -0.38 0.51 16 36 H 0.18 0.41 8.06 -52.49 -0.42 -0.01 16 37 H 0.18 0.38 8.06 -52.49 -0.42 -0.04 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.78 7.16 -51.93 -0.37 0.41 16 LS Contribution 354.71 15.07 5.35 5.35 Total: -1.00 -35.45 354.71 -9.72 -45.17 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.41 Total: 0.96 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -2.84 Total: -3.73 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.70 Total: -48.02 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.45 -9.72 -45.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093217518.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.607 kcal (2) G-P(sol) polarization free energy of solvation -35.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds