Wall clock time and date at job start Tue Mar 31 2020 20:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86793 * 119.99985 * 2 1 4 4 H 1.48504 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47185 * 299.99869 * 3 2 1 6 6 H 1.48495 * 109.47279 * 59.99889 * 3 2 1 7 7 C 1.38799 * 119.99702 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00008 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99694 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46885 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00256 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00100 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99956 * 179.97438 * 13 11 10 15 15 H 1.09000 * 115.49705 * 9.61960 * 14 13 11 16 16 C 1.53001 * 117.44341 * 224.23052 * 14 13 11 17 17 H 1.08997 * 119.52725 * 4.09201 * 16 14 13 18 18 C 1.54378 * 118.12734 * 160.69158 * 16 14 13 19 19 N 1.48559 * 104.59942 * 87.22849 * 18 16 14 20 20 C 1.39119 * 110.99947 * 200.96043 * 19 18 16 21 21 N 1.32557 * 120.10710 * 115.44449 * 20 19 18 22 22 C 1.32313 * 119.94358 * 179.97438 * 21 20 19 23 23 C 1.38064 * 120.16452 * 359.97438 * 22 21 20 24 24 N 1.32354 * 120.21924 * 0.02562 * 23 22 21 25 25 C 1.32066 * 120.05744 * 0.02562 * 24 23 22 26 26 F 1.35096 * 120.08422 * 180.02562 * 25 24 23 27 27 C 1.48557 * 104.22025 * 320.51854 * 19 18 16 28 28 C 1.53001 * 117.44235 * 155.00619 * 14 13 11 29 29 H 1.09005 * 120.23031 * 356.18914 * 28 14 13 30 30 H 0.96999 * 120.00335 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.46950 * 60.00177 * 10 9 7 32 32 H 1.09000 * 109.47395 * 299.99944 * 10 9 7 33 33 H 0.97000 * 120.00224 * 0.02562 * 13 11 10 34 34 H 1.09003 * 110.41118 * 328.44740 * 18 16 14 35 35 H 1.09004 * 110.41050 * 206.00925 * 18 16 14 36 36 H 1.07991 * 119.91942 * 179.97438 * 22 21 20 37 37 H 1.07995 * 119.88791 * 180.28255 * 23 22 21 38 38 H 1.08994 * 110.41437 * 158.26118 * 27 19 18 39 39 H 1.09003 * 110.41117 * 280.70013 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 2.3302 -7.7151 0.0019 15 1 1.2571 -7.8144 -0.1613 16 6 2.9950 -8.7162 0.9489 17 1 3.7716 -8.3744 1.6330 18 6 2.2198 -10.0014 1.3103 19 7 2.5683 -10.9642 0.2339 20 6 1.6194 -11.9776 0.1451 21 7 0.8791 -12.1014 -0.9476 22 6 -0.0221 -13.0667 -1.0288 23 6 -0.1933 -13.9462 0.0216 24 7 0.5423 -13.8286 1.1156 25 6 1.4437 -12.8676 1.2064 26 9 2.1952 -12.7473 2.3226 27 6 2.5843 -10.1399 -1.0018 28 6 3.2348 -8.8073 -0.5722 29 1 4.1944 -8.5466 -1.0189 30 1 -0.4850 0.8400 -0.0004 31 1 3.1243 -3.7314 0.8905 32 1 3.1244 -3.7314 -0.8894 33 1 3.8008 -6.1836 0.0004 34 1 1.1469 -9.8093 1.3158 35 1 2.5439 -10.3809 2.2794 36 1 -0.6252 -13.1670 -1.9190 37 1 -0.9270 -14.7353 -0.0514 38 1 3.1828 -10.6235 -1.7738 39 1 1.5684 -9.9694 -1.3583 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093217518.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:13 Heat of formation + Delta-G solvation = 4.830716 kcal Electronic energy + Delta-G solvation = -25234.899941 eV Core-core repulsion = 21219.377764 eV Total energy + Delta-G solvation = -4015.522177 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.21605 -42.49851 -41.28073 -40.12783 -36.93373 -35.16851 -34.58673 -33.95498 -31.40150 -30.33562 -29.83263 -27.68809 -26.60445 -25.47759 -23.78387 -22.17727 -21.89503 -21.43754 -19.84164 -19.29858 -19.17393 -18.50952 -18.07258 -17.84134 -17.50493 -16.88190 -16.43186 -16.28728 -16.03311 -15.73717 -15.43208 -15.13873 -14.91185 -14.74666 -14.60156 -14.47082 -13.95164 -13.87661 -13.60475 -13.43179 -13.16184 -12.99519 -12.91920 -12.61720 -12.57861 -12.44414 -12.00928 -11.72889 -11.41549 -11.15989 -11.07838 -10.91818 -10.42976 -10.27755 -9.89140 -9.50388 -8.67082 -8.35067 -6.13017 -0.53598 -0.20766 1.23426 1.41665 1.44832 1.46250 1.56798 1.89480 2.10377 2.25727 2.26985 2.51785 2.56128 2.99437 3.08038 3.09911 3.26968 3.43186 3.55537 3.60454 3.85390 3.86561 3.93828 4.12565 4.14476 4.24140 4.30292 4.41043 4.47621 4.50536 4.62742 4.75542 4.93275 4.98924 5.05402 5.10775 5.39827 5.42585 5.64092 5.97582 6.20122 6.41690 6.44243 7.06637 7.16543 8.74355 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.030978 B = 0.001841 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.661964 B =15206.466426 C =15463.613759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.085 0.915 9 S -0.152 6.152 10 C -0.128 4.128 11 C 0.541 3.459 12 O -0.562 6.562 13 N -0.681 5.681 14 C 0.105 3.895 15 H 0.108 0.892 16 C -0.164 4.164 17 H 0.146 0.854 18 C 0.068 3.932 19 N -0.451 5.451 20 C 0.229 3.771 21 N -0.465 5.465 22 C 0.077 3.923 23 C 0.068 3.932 24 N -0.475 5.475 25 C 0.232 3.768 26 F -0.106 7.106 27 C 0.076 3.924 28 C -0.149 4.149 29 H 0.151 0.849 30 H 0.271 0.729 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.422 0.578 34 H 0.048 0.952 35 H 0.109 0.891 36 H 0.222 0.778 37 H 0.224 0.776 38 H 0.107 0.893 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.359 -28.722 -2.029 29.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.075 5.925 10 C -0.279 4.279 11 C 0.327 3.673 12 O -0.440 6.440 13 N -0.333 5.333 14 C -0.002 4.002 15 H 0.126 0.874 16 C -0.184 4.184 17 H 0.164 0.836 18 C -0.058 4.058 19 N -0.169 5.169 20 C -0.007 4.007 21 N -0.184 5.184 22 C -0.084 4.084 23 C -0.092 4.092 24 N -0.195 5.195 25 C 0.073 3.927 26 F -0.085 7.085 27 C -0.051 4.051 28 C -0.169 4.169 29 H 0.169 0.831 30 H 0.080 0.920 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.260 0.740 34 H 0.067 0.933 35 H 0.127 0.873 36 H 0.238 0.762 37 H 0.240 0.760 38 H 0.126 0.874 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.845 -29.154 -1.862 29.793 hybrid contribution 1.358 1.519 0.286 2.058 sum 7.203 -27.635 -1.577 28.602 Atomic orbital electron populations 1.70187 1.07978 1.28546 1.48101 1.26138 0.95977 1.03370 0.93798 0.84896 0.78661 0.76321 0.78013 1.17923 1.20000 1.20035 1.23242 0.95405 0.91889 1.58681 0.89733 1.85615 1.10507 0.99312 1.97066 1.23357 1.03648 0.93719 1.07201 1.20106 0.86124 0.86561 0.74496 1.90700 1.17496 1.85966 1.49813 1.44959 1.10348 1.03124 1.74835 1.21564 0.97319 0.78845 1.02503 0.87415 1.23955 1.03685 0.96360 0.94408 0.83596 1.22731 0.98297 0.89421 0.95306 1.62857 1.37121 1.09583 1.07370 1.20776 0.92441 0.96546 0.90911 1.68574 1.04970 1.21976 1.22912 1.24485 0.93655 0.88924 1.01342 1.24279 0.97426 1.00669 0.86798 1.67804 1.04706 1.18794 1.28201 1.18675 0.93955 0.95363 0.84710 1.91615 1.72688 1.94677 1.49551 1.22562 1.01574 0.90082 0.90848 1.24005 1.02095 0.94667 0.96142 0.83096 0.92014 0.86832 0.86766 0.74033 0.93331 0.87279 0.76151 0.76000 0.87427 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.64 13.22 21.65 0.29 -55.35 16 2 C 0.01 0.67 5.49 84.86 0.47 1.13 16 3 Si 1.00 43.15 29.55 68.60 2.03 45.18 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.54 -30.61 9.50 67.95 0.65 -29.96 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.31 20.57 -56.49 -1.16 -9.47 16 10 C -0.13 -4.85 6.16 71.24 0.44 -4.41 16 11 C 0.54 19.13 7.85 87.66 0.69 19.82 16 12 O -0.56 -25.51 15.43 -3.04 -0.05 -25.56 16 13 N -0.68 -16.01 5.56 -442.53 -2.46 -18.47 16 14 C 0.11 2.30 5.98 44.99 0.27 2.57 16 15 H 0.11 3.03 7.40 -2.39 -0.02 3.02 16 16 C -0.16 -2.75 7.05 -9.90 -0.07 -2.82 16 17 H 0.15 1.99 8.14 -2.39 -0.02 1.97 16 18 C 0.07 1.24 5.64 86.45 0.49 1.73 16 19 N -0.45 -8.43 5.31 -687.15 -3.65 -12.08 16 20 C 0.23 4.47 6.16 133.10 0.82 5.29 16 21 N -0.47 -7.84 8.60 -192.42 -1.66 -9.50 16 22 C 0.08 0.73 11.21 84.58 0.95 1.67 16 23 C 0.07 0.65 11.21 84.57 0.95 1.60 16 24 N -0.48 -8.62 10.50 -195.80 -2.06 -10.68 16 25 C 0.23 4.80 8.19 84.99 0.70 5.50 16 26 F -0.11 -2.35 15.87 44.97 0.71 -1.64 16 27 C 0.08 1.28 5.73 86.45 0.50 1.77 16 28 C -0.15 -2.31 7.05 -9.90 -0.07 -2.38 16 29 H 0.15 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 32 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 33 H 0.42 6.67 8.83 -92.71 -0.82 5.85 16 34 H 0.05 1.01 7.97 -2.39 -0.02 0.99 16 35 H 0.11 1.86 7.26 -2.38 -0.02 1.85 16 36 H 0.22 0.14 8.06 -2.92 -0.02 0.12 16 37 H 0.22 0.07 8.06 -2.91 -0.02 0.05 16 38 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 1.31 7.16 -2.39 -0.02 1.29 16 Total: -1.00 -81.45 354.71 -0.95 -82.40 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.29 Total: 13.66 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 6.76 Total: 1.51 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -9.53 Total: -106.07 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.05 Total: -25.56 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.71 Total: -1.64 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Total: -81.45 -0.95 -82.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093217518.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.227 kcal (2) G-P(sol) polarization free energy of solvation -81.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds