Wall clock time and date at job start Tue Mar 31 2020 20:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00095 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99845 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99838 * 3 2 1 7 7 C 1.38801 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99941 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.80995 * 99.99933 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47163 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00101 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99720 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99750 * 180.02562 * 13 11 10 15 15 H 1.08999 * 115.52061 * 350.57474 * 14 13 11 16 16 C 1.53004 * 117.44606 * 205.16075 * 14 13 11 17 17 H 1.09005 * 119.52147 * 5.64311 * 16 14 13 18 18 C 1.54379 * 118.13261 * 160.68066 * 16 14 13 19 19 N 1.48564 * 104.59161 * 87.23043 * 18 16 14 20 20 C 1.39153 * 110.99968 * 200.96107 * 19 18 16 21 21 C 1.39204 * 120.06193 * 179.72897 * 20 19 18 22 22 N 1.32011 * 119.93331 * 179.71126 * 21 20 19 23 23 C 1.32399 * 120.04976 * 0.56108 * 22 21 20 24 24 F 1.35104 * 119.93358 * 179.73651 * 23 22 21 25 25 C 1.38466 * 120.12897 * 359.70907 * 23 22 21 26 26 N 1.32211 * 120.06531 * 0.02562 * 25 23 22 27 27 C 1.48557 * 104.22340 * 320.51924 * 19 18 16 28 28 C 1.53000 * 117.44786 * 136.00483 * 14 13 11 29 29 H 1.08999 * 119.52622 * 355.90195 * 28 14 13 30 30 H 0.97001 * 120.00200 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47176 * 299.99944 * 10 9 7 32 32 H 1.08998 * 109.47231 * 59.99799 * 10 9 7 33 33 H 0.96997 * 120.00437 * 359.97438 * 13 11 10 34 34 H 1.08999 * 110.41122 * 206.00881 * 18 16 14 35 35 H 1.09000 * 110.41386 * 328.33824 * 18 16 14 36 36 H 1.08001 * 120.03451 * 359.97438 * 21 20 19 37 37 H 1.08000 * 119.96953 * 179.97438 * 25 23 22 38 38 H 1.08998 * 110.41493 * 158.25898 * 27 19 18 39 39 H 1.08999 * 110.40906 * 280.58646 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1041 1.6964 -1.2125 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3430 0.0018 14 6 2.3303 -7.7150 0.0019 15 1 1.2568 -7.8145 0.1624 16 6 3.2336 -8.8063 0.5798 17 1 4.1761 -8.5290 1.0523 18 6 2.5823 -10.1381 1.0103 19 7 2.5689 -10.9645 -0.2242 20 6 1.6196 -11.9780 -0.1355 21 6 1.4438 -12.8635 -1.1952 22 7 0.5465 -13.8276 -1.1061 23 6 -0.1935 -13.9458 -0.0146 24 9 -1.1149 -14.9301 0.0719 25 6 -0.0246 -13.0629 1.0386 26 7 0.8764 -12.0987 0.9567 27 6 2.2226 -10.0036 -1.3029 28 6 2.9982 -8.7182 -0.9407 29 1 3.7769 -8.3778 -1.6232 30 1 -0.4850 -0.8400 -0.0004 31 1 3.1243 -3.7313 -0.8894 32 1 3.1244 -3.7313 0.8905 33 1 3.8008 -6.1835 0.0015 34 1 3.1792 -10.6205 1.7843 35 1 1.5663 -9.9668 1.3663 36 1 2.0440 -12.7644 -2.0876 37 1 -0.6299 -13.1614 1.9276 38 1 2.5487 -10.3847 -2.2706 39 1 1.1494 -9.8131 -1.3122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093219314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:04 Heat of formation + Delta-G solvation = 25.201262 kcal Electronic energy + Delta-G solvation = -24922.994214 eV Core-core repulsion = 20908.355371 eV Total energy + Delta-G solvation = -4014.638843 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.55652 -42.01300 -40.44172 -38.97816 -36.01971 -34.70254 -33.09901 -32.57973 -30.45232 -29.20920 -29.12188 -25.78712 -25.33873 -24.86193 -22.91472 -21.38395 -20.87249 -20.61128 -18.69469 -18.60251 -18.39731 -17.86940 -17.25734 -16.83404 -16.61810 -15.55404 -15.30945 -15.11239 -14.93843 -14.69941 -14.49320 -14.15356 -13.98311 -13.86819 -13.44746 -13.37807 -12.97819 -12.87850 -12.45501 -12.40918 -12.35391 -11.93899 -11.89299 -11.85150 -11.15499 -10.95438 -10.80296 -10.30122 -10.20744 -9.86973 -9.71511 -9.63404 -9.06954 -8.94669 -8.86684 -8.29288 -6.73825 -6.66959 -4.05857 0.00225 0.35531 2.54011 2.65259 2.72916 2.82992 2.99932 3.25915 3.28495 3.34708 3.37236 3.54662 3.57697 3.71304 4.12859 4.18717 4.20541 4.26733 4.39783 4.45579 4.59786 4.75791 4.82120 4.86724 4.91051 5.10670 5.17703 5.27499 5.37100 5.46066 5.56934 5.62234 5.66125 5.69830 5.72990 5.91785 6.21953 6.36198 6.54615 6.96488 7.41325 7.86548 8.32396 8.44986 9.21745 10.76832 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.030437 B = 0.001750 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.726742 B =15998.392043 C =16479.427116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.036 3.964 3 Si 1.084 2.916 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.609 4.609 8 H 0.066 0.934 9 S -0.114 6.114 10 C -0.131 4.131 11 C 0.537 3.463 12 O -0.512 6.512 13 N -0.707 5.707 14 C 0.127 3.873 15 H 0.135 0.865 16 C -0.173 4.173 17 H 0.127 0.873 18 C 0.072 3.928 19 N -0.447 5.447 20 C 0.245 3.755 21 C 0.091 3.909 22 N -0.450 5.450 23 C 0.228 3.772 24 F -0.102 7.102 25 C 0.071 3.929 26 N -0.446 5.446 27 C 0.070 3.930 28 C -0.175 4.175 29 H 0.128 0.872 30 H 0.278 0.722 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.403 0.597 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.184 0.816 37 H 0.184 0.816 38 H 0.102 0.898 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.759 -26.956 -0.137 28.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.175 4.175 3 Si 0.910 3.090 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.757 4.757 8 H 0.085 0.915 9 S 0.112 5.888 10 C -0.282 4.282 11 C 0.324 3.676 12 O -0.385 6.385 13 N -0.359 5.359 14 C 0.019 3.981 15 H 0.153 0.847 16 C -0.194 4.194 17 H 0.145 0.855 18 C -0.054 4.054 19 N -0.166 5.166 20 C 0.010 3.990 21 C -0.074 4.074 22 N -0.169 5.169 23 C 0.072 3.928 24 F -0.082 7.082 25 C -0.092 4.092 26 N -0.165 5.165 27 C -0.055 4.055 28 C -0.196 4.196 29 H 0.146 0.854 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.237 0.763 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.200 0.800 37 H 0.201 0.799 38 H 0.121 0.879 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.009 -25.895 -0.212 26.584 hybrid contribution 1.612 -1.394 0.140 2.136 sum 7.622 -27.288 -0.072 28.333 Atomic orbital electron populations 1.70805 1.06710 1.30963 1.43179 1.26068 0.96318 1.02174 0.92952 0.83326 0.74771 0.74172 0.76729 1.20245 1.21115 1.21105 1.23694 0.96034 0.92106 1.63847 0.91541 1.84849 1.07836 0.98832 1.97246 1.23315 1.05362 0.94038 1.05490 1.20356 0.86488 0.86143 0.74661 1.90711 1.15339 1.85426 1.47038 1.45315 1.10018 1.03701 1.76831 1.21623 0.98048 0.79054 0.99373 0.84707 1.23915 1.02668 0.96457 0.96341 0.85524 1.22569 1.01988 0.89982 0.90909 1.62865 1.36956 1.09629 1.07121 1.21102 0.90177 0.96329 0.91360 1.23161 0.95251 0.89452 0.99515 1.67754 1.04782 1.20577 1.23747 1.19041 0.91131 0.89633 0.92950 1.91666 1.61731 1.59033 1.95741 1.23487 0.96409 0.90414 0.98917 1.68493 1.03738 1.19282 1.24947 1.22742 0.99134 0.89159 0.94477 1.23935 1.04209 0.97864 0.93607 0.85391 0.90996 0.88705 0.88698 0.76266 0.88511 0.90326 0.79959 0.79875 0.87933 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.11 13.67 55.49 0.76 -26.35 16 2 C 0.04 1.02 5.49 -17.43 -0.10 0.92 16 3 Si 1.08 24.48 29.92 -169.99 -5.09 19.40 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.61 -17.18 9.50 30.94 0.29 -16.89 16 8 H 0.07 1.79 7.80 -52.49 -0.41 1.38 16 9 S -0.11 -2.98 19.60 -107.50 -2.11 -5.09 16 10 C -0.13 -2.50 6.16 36.01 0.22 -2.28 16 11 C 0.54 9.29 7.85 -10.99 -0.09 9.20 16 12 O -0.51 -10.95 15.43 5.56 0.09 -10.86 16 13 N -0.71 -8.38 5.56 -53.80 -0.30 -8.68 16 14 C 0.13 1.32 5.98 -67.93 -0.41 0.92 16 15 H 0.14 1.71 7.40 -51.93 -0.38 1.33 16 16 C -0.17 -1.35 7.04 -89.31 -0.63 -1.97 16 17 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 18 C 0.07 0.58 5.73 -2.18 -0.01 0.56 16 19 N -0.45 -3.41 5.41 -168.61 -0.91 -4.32 16 20 C 0.25 2.02 6.16 -154.63 -0.95 1.06 16 21 C 0.09 0.69 10.66 -17.12 -0.18 0.50 16 22 N -0.45 -4.18 10.50 -13.24 -0.14 -4.32 16 23 C 0.23 1.96 8.43 -17.22 -0.15 1.82 16 24 F -0.10 -0.90 17.29 2.25 0.04 -0.86 16 25 C 0.07 0.52 11.20 -17.30 -0.19 0.32 16 26 N -0.45 -3.90 8.60 -12.17 -0.10 -4.01 16 27 C 0.07 0.49 5.86 -2.16 -0.01 0.47 16 28 C -0.18 -1.35 7.04 -89.29 -0.63 -1.98 16 29 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.28 8.70 7.12 -40.82 -0.29 8.41 16 31 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 32 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 33 H 0.40 3.53 8.83 -40.82 -0.36 3.17 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.73 7.16 -51.93 -0.37 0.35 16 36 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.51 7.97 -51.93 -0.41 0.09 16 LS Contribution 355.65 15.07 5.36 5.36 Total: -1.00 -35.34 355.65 -9.64 -44.98 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.41 Total: 2.08 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -2.83 Total: -7.33 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.70 Total: -47.68 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 9 Polarization: -0.90 SS G_CDS: 0.04 Total: -0.86 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.09 Total: 19.40 kcal Atomic # 16 Polarization: -2.98 SS G_CDS: -2.11 Total: -5.09 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.34 -9.64 -44.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093219314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.186 kcal (2) G-P(sol) polarization free energy of solvation -35.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds