Wall clock time and date at job start Tue Mar 31 2020 20:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00095 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99845 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99838 * 3 2 1 7 7 C 1.38801 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99941 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.80995 * 99.99933 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47163 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00101 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99720 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99750 * 180.02562 * 13 11 10 15 15 H 1.08999 * 115.52061 * 350.57474 * 14 13 11 16 16 C 1.53004 * 117.44606 * 205.16075 * 14 13 11 17 17 H 1.09005 * 119.52147 * 5.64311 * 16 14 13 18 18 C 1.54379 * 118.13261 * 160.68066 * 16 14 13 19 19 N 1.48564 * 104.59161 * 87.23043 * 18 16 14 20 20 C 1.39153 * 110.99968 * 200.96107 * 19 18 16 21 21 C 1.39204 * 120.06193 * 179.72897 * 20 19 18 22 22 N 1.32011 * 119.93331 * 179.71126 * 21 20 19 23 23 C 1.32399 * 120.04976 * 0.56108 * 22 21 20 24 24 F 1.35104 * 119.93358 * 179.73651 * 23 22 21 25 25 C 1.38466 * 120.12897 * 359.70907 * 23 22 21 26 26 N 1.32211 * 120.06531 * 0.02562 * 25 23 22 27 27 C 1.48557 * 104.22340 * 320.51924 * 19 18 16 28 28 C 1.53000 * 117.44786 * 136.00483 * 14 13 11 29 29 H 1.08999 * 119.52622 * 355.90195 * 28 14 13 30 30 H 0.97001 * 120.00200 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47176 * 299.99944 * 10 9 7 32 32 H 1.08998 * 109.47231 * 59.99799 * 10 9 7 33 33 H 0.96997 * 120.00437 * 359.97438 * 13 11 10 34 34 H 1.08999 * 110.41122 * 206.00881 * 18 16 14 35 35 H 1.09000 * 110.41386 * 328.33824 * 18 16 14 36 36 H 1.08001 * 120.03451 * 359.97438 * 21 20 19 37 37 H 1.08000 * 119.96953 * 179.97438 * 25 23 22 38 38 H 1.08998 * 110.41493 * 158.25898 * 27 19 18 39 39 H 1.08999 * 110.40906 * 280.58646 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1041 1.6964 -1.2125 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3430 0.0018 14 6 2.3303 -7.7150 0.0019 15 1 1.2568 -7.8145 0.1624 16 6 3.2336 -8.8063 0.5798 17 1 4.1761 -8.5290 1.0523 18 6 2.5823 -10.1381 1.0103 19 7 2.5689 -10.9645 -0.2242 20 6 1.6196 -11.9780 -0.1355 21 6 1.4438 -12.8635 -1.1952 22 7 0.5465 -13.8276 -1.1061 23 6 -0.1935 -13.9458 -0.0146 24 9 -1.1149 -14.9301 0.0719 25 6 -0.0246 -13.0629 1.0386 26 7 0.8764 -12.0987 0.9567 27 6 2.2226 -10.0036 -1.3029 28 6 2.9982 -8.7182 -0.9407 29 1 3.7769 -8.3778 -1.6232 30 1 -0.4850 -0.8400 -0.0004 31 1 3.1243 -3.7313 -0.8894 32 1 3.1244 -3.7313 0.8905 33 1 3.8008 -6.1835 0.0015 34 1 3.1792 -10.6205 1.7843 35 1 1.5663 -9.9668 1.3663 36 1 2.0440 -12.7644 -2.0876 37 1 -0.6299 -13.1614 1.9276 38 1 2.5487 -10.3847 -2.2706 39 1 1.1494 -9.8131 -1.3122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093219314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:04 Heat of formation + Delta-G solvation = -1.048532 kcal Electronic energy + Delta-G solvation = -24924.132491 eV Core-core repulsion = 20908.355371 eV Total energy + Delta-G solvation = -4015.777120 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.20848 -42.63357 -41.27554 -40.14216 -36.83813 -35.39736 -34.74887 -34.11573 -31.37267 -30.30991 -29.81263 -27.11761 -26.42091 -25.94415 -23.64490 -22.14973 -21.93910 -21.43972 -20.41397 -19.31943 -19.22291 -18.52474 -18.17850 -17.96640 -17.49382 -16.72150 -16.53362 -16.03235 -15.90030 -15.70605 -15.50844 -15.19303 -15.06591 -14.78597 -14.59459 -14.46083 -14.20191 -13.98577 -13.83139 -13.50753 -13.43870 -13.02187 -12.73165 -12.60947 -12.51359 -12.01200 -11.95185 -11.57886 -11.43868 -11.17030 -11.09184 -10.94520 -10.47947 -10.32785 -9.91013 -9.49601 -8.91989 -8.87233 -6.27591 -0.59847 -0.25620 1.14535 1.38077 1.52597 1.61403 1.81178 1.89782 2.10651 2.22356 2.34478 2.41101 2.51796 2.98035 3.02766 3.11069 3.15198 3.40813 3.52372 3.62609 3.75771 3.76644 3.86809 3.99899 4.16972 4.17634 4.26567 4.35268 4.37471 4.49019 4.65908 4.77767 4.94114 4.97966 5.02960 5.10649 5.36559 5.61240 5.64944 5.94547 6.15066 6.35107 6.36248 7.06239 7.09222 8.51404 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.030437 B = 0.001750 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.726742 B =15998.392043 C =16479.427116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.020 4.020 3 Si 1.136 2.864 4 H -0.282 1.282 5 H -0.262 1.262 6 H -0.263 1.263 7 C -0.613 4.613 8 H 0.077 0.923 9 S -0.197 6.197 10 C -0.109 4.109 11 C 0.540 3.460 12 O -0.563 6.563 13 N -0.679 5.679 14 C 0.093 3.907 15 H 0.105 0.895 16 C -0.151 4.151 17 H 0.148 0.852 18 C 0.071 3.929 19 N -0.440 5.440 20 C 0.238 3.762 21 C 0.096 3.904 22 N -0.472 5.472 23 C 0.216 3.784 24 F -0.107 7.107 25 C 0.074 3.926 26 N -0.464 5.464 27 C 0.067 3.933 28 C -0.155 4.155 29 H 0.150 0.850 30 H 0.260 0.740 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.422 0.578 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.210 0.790 37 H 0.209 0.791 38 H 0.131 0.869 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.049 -27.747 -0.523 29.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.223 4.223 3 Si 0.954 3.046 4 H -0.207 1.207 5 H -0.187 1.187 6 H -0.188 1.188 7 C -0.760 4.760 8 H 0.095 0.905 9 S 0.030 5.970 10 C -0.260 4.260 11 C 0.326 3.674 12 O -0.441 6.441 13 N -0.330 5.330 14 C -0.014 4.014 15 H 0.123 0.877 16 C -0.171 4.171 17 H 0.166 0.834 18 C -0.056 4.056 19 N -0.159 5.159 20 C 0.003 3.997 21 C -0.069 4.069 22 N -0.191 5.191 23 C 0.061 3.939 24 F -0.086 7.086 25 C -0.088 4.088 26 N -0.183 5.183 27 C -0.058 4.058 28 C -0.175 4.175 29 H 0.167 0.833 30 H 0.071 0.929 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.260 0.740 34 H 0.123 0.877 35 H 0.080 0.920 36 H 0.227 0.773 37 H 0.226 0.774 38 H 0.149 0.851 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.356 -26.758 -0.596 28.353 hybrid contribution 0.623 -1.333 0.270 1.496 sum 9.980 -28.091 -0.326 29.813 Atomic orbital electron populations 1.70922 1.08058 1.30005 1.45913 1.27833 0.96313 1.06440 0.91737 0.82719 0.73934 0.69485 0.78477 1.20709 1.18716 1.18752 1.24035 0.96579 0.92701 1.62735 0.90453 1.85106 1.13184 1.01242 1.97500 1.23211 1.02226 0.93115 1.07448 1.20029 0.86176 0.86507 0.74702 1.90703 1.17495 1.85941 1.49932 1.44914 1.10276 1.03224 1.74627 1.21621 0.97297 0.78770 1.03685 0.87738 1.23930 1.02014 0.94510 0.96683 0.83386 1.22567 1.01244 0.90323 0.91465 1.62925 1.36616 1.09376 1.06957 1.21281 0.90253 0.96603 0.91563 1.23547 0.94769 0.88529 1.00073 1.67756 1.05536 1.21480 1.24325 1.19207 0.91339 0.89985 0.93386 1.91649 1.61928 1.59265 1.95793 1.23829 0.96079 0.89502 0.99368 1.68520 1.04351 1.19854 1.25554 1.22870 0.98400 0.88919 0.95591 1.24006 1.03305 0.96251 0.93940 0.83271 0.92878 0.86556 0.86676 0.73979 0.87742 0.92039 0.77327 0.77395 0.85106 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.55 13.67 21.65 0.30 -57.26 16 2 C -0.02 -1.15 5.49 84.86 0.47 -0.69 16 3 Si 1.14 48.35 29.92 68.60 2.05 50.40 16 4 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 7 C -0.61 -34.56 9.50 67.95 0.65 -33.91 16 8 H 0.08 4.05 7.80 -2.91 -0.02 4.02 16 9 S -0.20 -10.57 19.60 -56.49 -1.11 -11.68 16 10 C -0.11 -4.02 6.16 71.24 0.44 -3.58 16 11 C 0.54 18.40 7.85 87.66 0.69 19.09 16 12 O -0.56 -24.86 15.43 -3.03 -0.05 -24.90 16 13 N -0.68 -14.77 5.56 -442.53 -2.46 -17.23 16 14 C 0.09 1.83 5.98 44.99 0.27 2.10 16 15 H 0.10 2.76 7.40 -2.39 -0.02 2.74 16 16 C -0.15 -1.94 7.04 -9.95 -0.07 -2.01 16 17 H 0.15 1.35 8.14 -2.38 -0.02 1.33 16 18 C 0.07 1.01 5.73 86.45 0.50 1.50 16 19 N -0.44 -5.74 5.41 -687.35 -3.72 -9.45 16 20 C 0.24 3.58 6.16 132.95 0.82 4.39 16 21 C 0.10 1.28 10.66 84.90 0.91 2.19 16 22 N -0.47 -8.37 10.50 -195.82 -2.06 -10.43 16 23 C 0.22 3.62 8.43 84.66 0.71 4.33 16 24 F -0.11 -1.85 17.29 44.97 0.78 -1.07 16 25 C 0.07 1.04 11.20 84.69 0.95 1.99 16 26 N -0.46 -7.76 8.60 -192.41 -1.65 -9.41 16 27 C 0.07 0.77 5.86 86.47 0.51 1.28 16 28 C -0.15 -1.93 7.04 -9.93 -0.07 -2.00 16 29 H 0.15 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.26 17.05 7.12 -92.71 -0.66 16.39 16 31 H 0.12 3.81 8.14 -2.40 -0.02 3.79 16 32 H 0.12 3.80 8.14 -2.40 -0.02 3.78 16 33 H 0.42 5.94 8.83 -92.71 -0.82 5.12 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.11 7.16 -2.39 -0.02 1.10 16 36 H 0.21 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.21 1.60 8.06 -2.91 -0.02 1.57 16 38 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.05 0.74 7.97 -2.39 -0.02 0.72 16 Total: -1.00 -80.45 355.65 -0.76 -81.21 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.40 Total: 15.15 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 6.76 Total: -5.31 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -9.59 Total: -103.78 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.05 Total: -24.90 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.78 Total: -1.07 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.05 Total: 50.40 kcal Atomic # 16 Polarization: -10.57 SS G_CDS: -1.11 Total: -11.68 kcal Total: -80.45 -0.76 -81.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093219314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.157 kcal (2) G-P(sol) polarization free energy of solvation -80.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds