Wall clock time and date at job start Tue Mar 31 2020 20:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39899 * 109.47205 * 2 1 4 4 F 1.39889 * 109.47422 * 239.99715 * 2 1 3 5 5 C 1.50700 * 109.46860 * 119.99706 * 2 1 3 6 6 O 1.21276 * 120.00439 * 341.00291 * 5 2 1 7 7 N 1.34777 * 119.99888 * 161.00814 * 5 2 1 8 8 C 1.46473 * 120.91885 * 7.70210 * 7 5 2 9 9 C 1.52189 * 110.85251 * 127.74395 * 8 7 5 10 10 N 1.44357 * 114.20325 * 29.35875 * 9 8 7 11 11 C 1.36930 * 116.72124 * 157.20261 * 10 9 8 12 12 H 1.08003 * 120.00252 * 188.86565 * 11 10 9 13 13 C 1.38810 * 120.00235 * 8.85941 * 11 10 9 14 14 N 1.31617 * 119.99601 * 42.66818 * 13 11 10 15 15 Si 1.86802 * 120.00399 * 222.66437 * 13 11 10 16 16 H 1.48505 * 109.46920 * 179.97438 * 15 13 11 17 17 H 1.48504 * 109.46769 * 60.00436 * 15 13 11 18 18 H 1.48498 * 109.47241 * 300.00026 * 15 13 11 19 19 C 1.45110 * 126.55692 * 336.91399 * 10 9 8 20 20 H 1.08997 * 109.80610 * 152.74756 * 19 10 9 21 21 C 1.54965 * 109.12139 * 273.15028 * 19 10 9 22 22 S 1.83204 * 102.91187 * 161.07403 * 21 19 10 23 23 O 1.42093 * 109.34849 * 90.60451 * 22 21 19 24 24 O 1.42098 * 109.34747 * 223.79482 * 22 21 19 25 25 C 1.82878 * 97.05191 * 337.19667 * 22 21 19 26 26 C 1.46869 * 120.91589 * 187.73320 * 7 5 2 27 27 H 1.09002 * 110.07402 * 120.48643 * 26 7 5 28 28 H 1.09006 * 109.47453 * 300.00302 * 1 2 3 29 29 H 1.09006 * 109.46976 * 59.99900 * 1 2 3 30 30 H 1.09000 * 109.47151 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.17915 * 248.46974 * 8 7 5 32 32 H 1.09001 * 109.17624 * 7.74767 * 8 7 5 33 33 H 1.08994 * 108.99687 * 267.84796 * 9 8 7 34 34 H 1.09001 * 108.19931 * 150.28363 * 9 8 7 35 35 H 0.97002 * 120.00425 * 356.59070 * 14 13 11 36 36 H 1.08992 * 110.72687 * 279.43207 * 21 19 10 37 37 H 1.09000 * 110.72154 * 42.54443 * 21 19 10 38 38 H 1.09002 * 110.28401 * 117.70432 * 25 22 21 39 39 H 1.08995 * 110.28629 * 239.71184 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1421 5 6 2.0322 -0.7104 1.2305 6 8 1.2981 -0.8656 2.1833 7 7 3.2974 -1.1731 1.2723 8 6 4.2512 -0.8534 0.2076 9 6 5.5353 -0.2765 0.7858 10 7 5.8514 -0.7489 2.1127 11 6 7.1640 -0.6756 2.4959 12 1 7.4851 -1.1426 3.4154 13 6 8.0821 -0.0014 1.7026 14 7 7.7611 1.1554 1.1629 15 14 9.7731 -0.7355 1.4010 16 1 10.5583 0.1728 0.5271 17 1 9.6281 -2.0565 0.7381 18 1 10.4768 -0.9068 2.6974 19 6 4.9175 -1.2883 3.0835 20 1 5.4352 -1.9773 3.7509 21 6 4.3071 -0.1229 3.9025 22 16 2.7970 -0.8730 4.6190 23 8 3.1079 -1.4408 5.8838 24 8 1.7148 0.0398 4.4974 25 6 2.6034 -2.2096 3.3859 26 6 3.7576 -2.0123 2.3863 27 1 4.0961 -2.9784 2.0119 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.4794 -1.7600 -0.3528 32 1 3.8052 -0.1201 -0.4643 33 1 5.4541 0.8100 0.8158 34 1 6.3570 -0.5400 0.1200 35 1 6.8668 1.5131 1.2786 36 1 4.9907 0.1949 4.6897 37 1 4.0539 0.7144 3.2522 38 1 2.6874 -3.1836 3.8680 39 1 1.6422 -2.1207 2.8799 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094598020.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:50 Heat of formation + Delta-G solvation = -107.351870 kcal Electronic energy + Delta-G solvation = -30494.771066 eV Core-core repulsion = 26011.322312 eV Total energy + Delta-G solvation = -4483.448754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -49.42802 -47.32749 -40.92909 -38.15666 -36.54449 -35.55535 -34.96082 -34.12578 -31.80922 -31.17535 -29.13196 -28.20782 -25.71443 -24.50439 -23.78132 -22.39416 -20.91450 -19.30704 -18.68258 -18.13485 -17.97688 -17.33018 -17.08308 -16.56771 -16.35133 -15.93904 -15.44603 -14.99287 -14.70242 -14.58890 -14.18625 -14.07205 -13.92756 -13.65447 -13.63001 -13.54302 -13.17150 -12.89285 -12.77502 -12.65736 -12.57177 -12.27463 -11.84808 -11.71827 -11.65415 -11.55499 -11.18875 -11.09208 -10.90504 -10.64927 -10.52060 -10.13774 -10.06620 -9.82750 -9.33053 -8.79643 -8.32637 -7.30648 -6.49260 -3.35418 0.49460 1.81886 2.34210 2.95415 3.34499 3.37173 3.42723 3.59963 3.67752 3.91403 4.14736 4.30071 4.35983 4.47317 4.55002 4.76029 4.89922 4.94180 5.05334 5.18841 5.23002 5.29622 5.33244 5.39698 5.48650 5.55335 5.66600 5.67715 5.79297 6.07780 6.24528 6.44623 6.62782 6.68615 7.00263 7.58746 7.77120 8.28568 8.79291 9.58708 9.78131 10.84196 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012036 B = 0.006217 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.749851 B = 4502.422751 C = 6140.638465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.281 3.719 3 F -0.178 7.178 4 F -0.186 7.186 5 C 0.480 3.520 6 O -0.487 6.487 7 N -0.577 5.577 8 C 0.085 3.915 9 C 0.145 3.855 10 N -0.569 5.569 11 C -0.402 4.402 12 H 0.074 0.926 13 C -0.007 4.007 14 N -0.885 5.885 15 Si 1.056 2.944 16 H -0.286 1.286 17 H -0.292 1.292 18 H -0.291 1.291 19 C 0.186 3.814 20 H 0.096 0.904 21 C -0.597 4.597 22 S 2.380 3.620 23 O -0.958 6.958 24 O -0.933 6.933 25 C -0.653 4.653 26 C 0.147 3.853 27 H 0.112 0.888 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.273 0.727 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.828 -5.701 -4.246 13.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.241 3.759 3 F -0.159 7.159 4 F -0.167 7.167 5 C 0.265 3.735 6 O -0.365 6.365 7 N -0.307 5.307 8 C -0.038 4.038 9 C 0.019 3.981 10 N -0.289 5.289 11 C -0.530 4.530 12 H 0.092 0.908 13 C -0.213 4.213 14 N -0.523 5.523 15 Si 0.885 3.115 16 H -0.212 1.212 17 H -0.219 1.219 18 H -0.217 1.217 19 C 0.073 3.927 20 H 0.114 0.886 21 C -0.732 4.732 22 S 2.564 3.436 23 O -0.955 6.955 24 O -0.929 6.929 25 C -0.780 4.780 26 C 0.043 3.957 27 H 0.130 0.870 28 H 0.123 0.877 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.151 0.849 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -11.250 -5.241 -3.751 12.965 hybrid contribution -0.623 -0.288 -0.046 0.688 sum -11.873 -5.529 -3.798 13.637 Atomic orbital electron populations 1.22631 0.88596 1.06297 1.06333 1.21397 0.95847 0.76414 0.82211 1.93119 1.90396 1.35868 1.96517 1.93044 1.90197 1.80743 1.52754 1.21041 0.82654 0.80916 0.88916 1.90324 1.57826 1.54157 1.34212 1.47868 1.09898 1.48209 1.24712 1.22450 0.90585 1.01854 0.88922 1.20650 0.93338 0.97310 0.86828 1.42955 1.04969 1.72024 1.08996 1.19993 0.82952 1.38800 1.11223 0.90793 1.25726 1.04204 0.93495 0.97879 1.70966 1.21276 1.11138 1.48926 0.83625 0.75340 0.75934 0.76608 1.21169 1.21881 1.21732 1.20967 0.89413 0.91758 0.90556 0.88620 1.31450 1.18083 1.11351 1.12317 1.09242 0.78619 0.78831 0.76947 1.93554 1.85255 1.78638 1.38074 1.93566 1.51361 1.61006 1.87007 1.32274 1.12139 1.18160 1.15460 1.21934 0.92373 0.95234 0.86163 0.87042 0.87666 0.89192 0.88806 0.90375 0.89035 0.94911 0.90707 0.91396 0.84924 0.85674 0.85325 0.76957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 8.84 37.16 0.33 -1.40 16 2 C 0.28 3.59 1.76 -27.88 -0.05 3.55 16 3 F -0.18 -2.60 16.43 2.25 0.04 -2.56 16 4 F -0.19 -2.30 14.58 2.25 0.03 -2.27 16 5 C 0.48 7.06 7.00 -10.99 -0.08 6.98 16 6 O -0.49 -7.58 9.42 -16.07 -0.15 -7.73 16 7 N -0.58 -8.75 2.80 -165.50 -0.46 -9.22 16 8 C 0.08 1.32 5.67 -4.47 -0.03 1.29 16 9 C 0.15 2.92 4.95 -5.60 -0.03 2.90 16 10 N -0.57 -12.19 2.79 -167.37 -0.47 -12.66 16 11 C -0.40 -9.95 9.23 -15.06 -0.14 -10.08 16 12 H 0.07 1.85 7.85 -52.48 -0.41 1.44 16 13 C -0.01 -0.19 4.16 -17.43 -0.07 -0.26 16 14 N -0.88 -23.99 12.76 55.49 0.71 -23.28 16 15 Si 1.06 23.01 30.06 -169.99 -5.11 17.90 16 16 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 19 C 0.19 3.34 2.82 -67.39 -0.19 3.15 16 20 H 0.10 1.66 7.78 -51.93 -0.40 1.25 16 21 C -0.60 -10.71 6.78 38.20 0.26 -10.45 16 22 S 2.38 40.20 5.83 -107.50 -0.63 39.58 16 23 O -0.96 -18.37 18.14 -57.71 -1.05 -19.42 16 24 O -0.93 -18.30 16.31 -66.29 -1.08 -19.38 16 25 C -0.65 -9.00 6.07 37.65 0.23 -8.77 16 26 C 0.15 2.20 3.43 -66.98 -0.23 1.97 16 27 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.10 1.05 7.91 -51.93 -0.41 0.64 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.34 4.98 -51.93 -0.26 1.09 16 33 H 0.03 0.74 6.16 -51.93 -0.32 0.42 16 34 H 0.07 1.64 6.87 -51.93 -0.36 1.29 16 35 H 0.27 7.43 6.01 -40.82 -0.25 7.19 16 36 H 0.13 2.38 8.14 -51.93 -0.42 1.95 16 37 H 0.12 2.38 8.14 -51.93 -0.42 1.96 16 38 H 0.13 1.43 8.14 -51.93 -0.42 1.00 16 39 H 0.22 2.98 4.19 -58.83 -0.25 2.74 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -31.82 319.90 -7.75 -39.57 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -4.41 Total: 5.76 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 0.01 Total: -11.12 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.22 Total: -45.15 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -2.28 Total: -46.53 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.07 Total: -4.83 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.11 Total: 17.90 kcal Atomic # 16 Polarization: 40.20 SS G_CDS: -0.63 Total: 39.58 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.82 -7.75 -39.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094598020.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.781 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds