Wall clock time and date at job start Tue Mar 31 2020 20:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39899 * 109.47205 * 2 1 4 4 F 1.39889 * 109.47422 * 239.99715 * 2 1 3 5 5 C 1.50700 * 109.46860 * 119.99706 * 2 1 3 6 6 O 1.21276 * 120.00439 * 341.00291 * 5 2 1 7 7 N 1.34777 * 119.99888 * 161.00814 * 5 2 1 8 8 C 1.46473 * 120.91885 * 7.70210 * 7 5 2 9 9 C 1.52189 * 110.85251 * 127.74395 * 8 7 5 10 10 N 1.44357 * 114.20325 * 29.35875 * 9 8 7 11 11 C 1.36930 * 116.72124 * 157.20261 * 10 9 8 12 12 H 1.08003 * 120.00252 * 188.86565 * 11 10 9 13 13 C 1.38810 * 120.00235 * 8.85941 * 11 10 9 14 14 N 1.31617 * 119.99601 * 42.66818 * 13 11 10 15 15 Si 1.86802 * 120.00399 * 222.66437 * 13 11 10 16 16 H 1.48505 * 109.46920 * 179.97438 * 15 13 11 17 17 H 1.48504 * 109.46769 * 60.00436 * 15 13 11 18 18 H 1.48498 * 109.47241 * 300.00026 * 15 13 11 19 19 C 1.45110 * 126.55692 * 336.91399 * 10 9 8 20 20 H 1.08997 * 109.80610 * 152.74756 * 19 10 9 21 21 C 1.54965 * 109.12139 * 273.15028 * 19 10 9 22 22 S 1.83204 * 102.91187 * 161.07403 * 21 19 10 23 23 O 1.42093 * 109.34849 * 90.60451 * 22 21 19 24 24 O 1.42098 * 109.34747 * 223.79482 * 22 21 19 25 25 C 1.82878 * 97.05191 * 337.19667 * 22 21 19 26 26 C 1.46869 * 120.91589 * 187.73320 * 7 5 2 27 27 H 1.09002 * 110.07402 * 120.48643 * 26 7 5 28 28 H 1.09006 * 109.47453 * 300.00302 * 1 2 3 29 29 H 1.09006 * 109.46976 * 59.99900 * 1 2 3 30 30 H 1.09000 * 109.47151 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.17915 * 248.46974 * 8 7 5 32 32 H 1.09001 * 109.17624 * 7.74767 * 8 7 5 33 33 H 1.08994 * 108.99687 * 267.84796 * 9 8 7 34 34 H 1.09001 * 108.19931 * 150.28363 * 9 8 7 35 35 H 0.97002 * 120.00425 * 356.59070 * 14 13 11 36 36 H 1.08992 * 110.72687 * 279.43207 * 21 19 10 37 37 H 1.09000 * 110.72154 * 42.54443 * 21 19 10 38 38 H 1.09002 * 110.28401 * 117.70432 * 25 22 21 39 39 H 1.08995 * 110.28629 * 239.71184 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1421 5 6 2.0322 -0.7104 1.2305 6 8 1.2981 -0.8656 2.1833 7 7 3.2974 -1.1731 1.2723 8 6 4.2512 -0.8534 0.2076 9 6 5.5353 -0.2765 0.7858 10 7 5.8514 -0.7489 2.1127 11 6 7.1640 -0.6756 2.4959 12 1 7.4851 -1.1426 3.4154 13 6 8.0821 -0.0014 1.7026 14 7 7.7611 1.1554 1.1629 15 14 9.7731 -0.7355 1.4010 16 1 10.5583 0.1728 0.5271 17 1 9.6281 -2.0565 0.7381 18 1 10.4768 -0.9068 2.6974 19 6 4.9175 -1.2883 3.0835 20 1 5.4352 -1.9773 3.7509 21 6 4.3071 -0.1229 3.9025 22 16 2.7970 -0.8730 4.6190 23 8 3.1079 -1.4408 5.8838 24 8 1.7148 0.0398 4.4974 25 6 2.6034 -2.2096 3.3859 26 6 3.7576 -2.0123 2.3863 27 1 4.0961 -2.9784 2.0119 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.4794 -1.7600 -0.3528 32 1 3.8052 -0.1201 -0.4643 33 1 5.4541 0.8100 0.8158 34 1 6.3570 -0.5400 0.1200 35 1 6.8668 1.5131 1.2786 36 1 4.9907 0.1949 4.6897 37 1 4.0539 0.7144 3.2522 38 1 2.6874 -3.1836 3.8680 39 1 1.6422 -2.1207 2.8799 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094598020.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:49 Heat of formation + Delta-G solvation = -130.154873 kcal Electronic energy + Delta-G solvation = -30495.759879 eV Core-core repulsion = 26011.322312 eV Total energy + Delta-G solvation = -4484.437567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.45365 -48.36475 -42.16960 -39.56475 -38.02580 -37.04572 -36.49455 -35.47810 -33.06010 -32.56629 -30.42610 -29.77544 -26.92935 -25.95934 -25.20708 -23.84241 -22.10153 -20.66559 -20.13836 -19.70504 -19.04776 -18.71188 -18.23352 -17.85899 -17.68311 -17.17979 -16.78862 -16.40791 -16.01961 -15.99156 -15.65983 -15.52548 -15.28893 -15.11127 -14.80428 -14.67345 -14.40634 -14.33775 -14.03057 -13.61812 -13.47297 -13.36127 -13.22299 -13.13888 -13.03923 -13.01223 -12.71560 -12.61624 -12.44109 -12.24673 -12.03235 -11.87978 -11.69688 -11.31268 -10.51011 -10.29462 -10.00026 -9.08581 -8.46712 -5.29891 -0.88875 0.65038 1.21107 1.58799 1.61756 1.66839 1.86831 2.22289 2.52494 2.63906 2.75849 3.01013 3.08052 3.14914 3.25059 3.38264 3.43239 3.56934 3.68683 3.73723 3.93242 4.10289 4.14920 4.26212 4.40029 4.52167 4.56429 4.59843 4.67516 4.82067 4.95892 5.00513 5.07272 5.25767 5.75917 5.85875 6.30632 6.41289 6.95922 7.75862 7.93573 8.85584 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012036 B = 0.006217 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.749851 B = 4502.422751 C = 6140.638465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.278 3.722 3 F -0.193 7.193 4 F -0.182 7.182 5 C 0.477 3.523 6 O -0.494 6.494 7 N -0.582 5.582 8 C 0.097 3.903 9 C 0.154 3.846 10 N -0.579 5.579 11 C -0.401 4.401 12 H 0.067 0.933 13 C -0.055 4.055 14 N -0.917 5.917 15 Si 1.104 2.896 16 H -0.298 1.298 17 H -0.275 1.275 18 H -0.282 1.282 19 C 0.173 3.827 20 H 0.104 0.896 21 C -0.605 4.605 22 S 2.393 3.607 23 O -0.980 6.980 24 O -0.961 6.961 25 C -0.622 4.622 26 C 0.150 3.850 27 H 0.145 0.855 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.099 0.901 33 H -0.001 1.001 34 H 0.052 0.948 35 H 0.260 0.740 36 H 0.122 0.878 37 H 0.106 0.894 38 H 0.170 0.830 39 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.232 -8.288 -4.952 16.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.239 3.761 3 F -0.174 7.174 4 F -0.163 7.163 5 C 0.262 3.738 6 O -0.373 6.373 7 N -0.312 5.312 8 C -0.026 4.026 9 C 0.027 3.973 10 N -0.300 5.300 11 C -0.529 4.529 12 H 0.085 0.915 13 C -0.255 4.255 14 N -0.558 5.558 15 Si 0.929 3.071 16 H -0.224 1.224 17 H -0.201 1.201 18 H -0.208 1.208 19 C 0.062 3.938 20 H 0.122 0.878 21 C -0.738 4.738 22 S 2.580 3.420 23 O -0.977 6.977 24 O -0.958 6.958 25 C -0.753 4.753 26 C 0.045 3.955 27 H 0.162 0.838 28 H 0.117 0.883 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.016 0.984 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.140 0.860 37 H 0.125 0.875 38 H 0.188 0.812 39 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -12.671 -7.816 -4.420 15.530 hybrid contribution -0.241 0.508 0.248 0.615 sum -12.912 -7.308 -4.173 15.413 Atomic orbital electron populations 1.22709 0.85748 1.07812 1.07150 1.21627 0.97645 0.75428 0.81444 1.93097 1.90787 1.36964 1.96534 1.93050 1.90345 1.80554 1.52338 1.21403 0.82350 0.80482 0.89520 1.90316 1.58027 1.54358 1.34640 1.47901 1.10098 1.48536 1.24650 1.22261 0.88509 1.03044 0.88752 1.20434 0.95076 0.95595 0.86200 1.43062 1.04782 1.72110 1.10087 1.20188 0.84756 1.37227 1.10706 0.91459 1.26816 1.07254 0.93338 0.98132 1.71072 1.20756 1.12661 1.51319 0.82983 0.71948 0.75515 0.76620 1.22439 1.20090 1.20771 1.21274 0.90410 0.91701 0.90422 0.87817 1.31326 1.19528 1.10927 1.12016 1.08652 0.77071 0.79167 0.77108 1.93524 1.85265 1.78820 1.40116 1.93530 1.51657 1.62978 1.87594 1.32100 1.12067 1.17788 1.13332 1.22000 0.91348 0.95933 0.86175 0.83755 0.88255 0.87018 0.86951 0.87691 0.88259 0.98384 0.92960 0.92862 0.85968 0.87491 0.81239 0.76048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 8.84 71.98 0.64 -2.23 16 2 C 0.28 6.53 1.76 29.85 0.05 6.58 16 3 F -0.19 -5.48 16.43 44.97 0.74 -4.74 16 4 F -0.18 -4.01 14.58 44.97 0.66 -3.36 16 5 C 0.48 12.93 7.00 87.66 0.61 13.54 16 6 O -0.49 -14.13 9.42 17.66 0.17 -13.96 16 7 N -0.58 -16.32 2.80 -795.90 -2.23 -18.55 16 8 C 0.10 2.89 5.67 86.12 0.49 3.38 16 9 C 0.15 6.29 4.95 86.51 0.43 6.72 16 10 N -0.58 -24.96 2.79 -683.42 -1.91 -26.87 16 11 C -0.40 -20.04 9.23 84.03 0.78 -19.26 16 12 H 0.07 3.39 7.85 -2.91 -0.02 3.37 16 13 C -0.06 -2.87 4.16 84.86 0.35 -2.52 16 14 N -0.92 -51.69 12.76 21.65 0.28 -51.42 16 15 Si 1.10 46.93 30.06 68.60 2.06 48.99 16 16 H -0.30 -13.16 7.11 99.48 0.71 -12.45 16 17 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 18 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 19 C 0.17 6.07 2.82 46.09 0.13 6.20 16 20 H 0.10 3.44 7.78 -2.39 -0.02 3.42 16 21 C -0.60 -22.00 6.78 72.65 0.49 -21.50 16 22 S 2.39 78.06 5.83 -56.49 -0.33 77.73 16 23 O -0.98 -36.38 18.14 -127.48 -2.31 -38.69 16 24 O -0.96 -37.08 16.31 -119.28 -1.95 -39.03 16 25 C -0.62 -14.82 6.07 72.30 0.44 -14.38 16 26 C 0.15 3.99 3.43 45.40 0.16 4.15 16 27 H 0.15 3.07 8.14 -2.39 -0.02 3.05 16 28 H 0.10 1.77 7.91 -2.38 -0.02 1.75 16 29 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.10 2.81 4.98 -2.39 -0.01 2.80 16 33 H 0.00 -0.07 6.16 -2.39 -0.01 -0.08 16 34 H 0.05 2.36 6.87 -2.39 -0.02 2.34 16 35 H 0.26 14.94 6.01 -92.71 -0.56 14.38 16 36 H 0.12 4.59 8.14 -2.39 -0.02 4.57 16 37 H 0.11 4.26 8.14 -2.39 -0.02 4.24 16 38 H 0.17 2.80 8.14 -2.39 -0.02 2.79 16 39 H 0.23 5.29 4.19 -111.66 -0.47 4.82 16 Total: -1.00 -70.38 319.90 0.60 -69.78 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.86 Total: 19.44 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 4.57 Total: -19.33 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -3.86 Total: -96.83 kcal Atomic # 8 Polarization: -87.59 SS G_CDS: -4.09 Total: -91.68 kcal Atomic # 9 Polarization: -9.49 SS G_CDS: 1.39 Total: -8.10 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.06 Total: 48.99 kcal Atomic # 16 Polarization: 78.06 SS G_CDS: -0.33 Total: 77.73 kcal Total: -70.38 0.60 -69.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094598020.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.371 kcal (2) G-P(sol) polarization free energy of solvation -70.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds