Wall clock time and date at job start Tue Mar 31 2020 20:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99778 * 2 1 4 4 H 1.48495 * 109.47444 * 89.99730 * 3 2 1 5 5 H 1.48507 * 109.47068 * 329.99449 * 3 2 1 6 6 H 1.48505 * 109.46869 * 209.99645 * 3 2 1 7 7 C 1.38805 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99880 * 20.96952 * 7 2 1 9 9 N 1.36940 * 120.00228 * 200.96376 * 7 2 1 10 10 C 1.50238 * 130.83810 * 9.93220 * 9 7 2 11 11 H 1.08995 * 115.85513 * 0.39326 * 10 9 7 12 12 C 1.55841 * 101.05100 * 234.00270 * 10 9 7 13 13 C 1.54222 * 103.56437 * 327.15097 * 12 10 9 14 14 C 1.50236 * 130.83770 * 190.27114 * 9 7 2 15 15 H 1.08998 * 115.85956 * 359.60837 * 14 9 7 16 16 C 1.55842 * 101.04878 * 233.93333 * 14 9 7 17 17 H 1.09004 * 110.62877 * 85.55364 * 16 14 9 18 18 N 1.46499 * 110.62637 * 208.41221 * 16 14 9 19 19 C 1.34776 * 120.00482 * 274.64891 * 18 16 14 20 20 O 1.21575 * 119.99561 * 359.97438 * 19 18 16 21 21 C 1.47692 * 120.00537 * 179.97438 * 19 18 16 22 22 C 1.39655 * 120.15887 * 359.72137 * 21 19 18 23 23 C 1.37967 * 119.86380 * 179.69685 * 22 21 19 24 24 Cl 1.73599 * 119.90343 * 180.29882 * 23 22 21 25 25 C 1.38566 * 120.19030 * 0.60572 * 23 22 21 26 26 C 1.38187 * 120.32648 * 359.67239 * 25 23 22 27 27 C 1.38321 * 120.13015 * 0.02562 * 26 25 23 28 28 F 1.35101 * 120.09367 * 180.02562 * 27 26 25 29 29 C 1.54844 * 103.44682 * 327.06225 * 16 14 9 30 30 H 0.96994 * 119.99703 * 174.93048 * 1 2 3 31 31 H 1.08998 * 110.62355 * 85.54996 * 12 10 9 32 32 H 1.09002 * 110.62689 * 208.41390 * 12 10 9 33 33 H 1.09001 * 110.64291 * 241.43381 * 13 12 10 34 34 H 1.09005 * 110.49442 * 118.49511 * 13 12 10 35 35 H 0.97008 * 120.00304 * 94.64575 * 18 16 14 36 36 H 1.08006 * 120.06817 * 359.97438 * 22 21 19 37 37 H 1.07999 * 119.83599 * 179.69471 * 25 23 22 38 38 H 1.08001 * 119.93205 * 180.02562 * 26 25 23 39 39 H 1.08994 * 110.63105 * 118.49146 * 29 16 14 40 40 H 1.09007 * 110.62979 * 241.51324 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 1.4000 5 1 1.4476 2.6527 -0.7002 6 1 3.5478 1.4402 -0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.5240 -2.1066 -0.3338 9 7 3.3117 -1.2411 0.4248 10 6 4.1525 -0.2029 1.1122 11 1 3.6589 0.7460 1.3217 12 6 5.3857 -0.1398 0.1613 13 6 5.5130 -1.5849 -0.3623 14 6 4.3403 -2.3329 0.3404 15 1 4.0120 -3.2599 -0.1297 16 6 4.7724 -2.4522 1.8329 17 1 4.1023 -3.1199 2.3746 18 7 6.1569 -2.9205 1.9335 19 6 6.4255 -4.2409 1.9056 20 8 5.5187 -5.0435 1.7975 21 6 7.8213 -4.7130 2.0064 22 6 8.8660 -3.7938 2.1249 23 6 10.1671 -4.2417 2.2249 24 17 11.4659 -3.1003 2.3800 25 6 10.4408 -5.5998 2.1955 26 6 9.4136 -6.5160 2.0728 27 6 8.1037 -6.0820 1.9778 28 9 7.1000 -6.9784 1.8583 29 6 4.6434 -1.0028 2.3621 30 1 -0.4849 -0.8367 -0.0742 31 1 5.2004 0.5496 -0.6624 32 1 6.2802 0.1524 0.7114 33 1 6.4715 -2.0155 -0.0726 34 1 5.3909 -1.6106 -1.4452 35 1 6.8805 -2.2802 2.0201 36 1 8.6555 -2.7346 2.1426 37 1 11.4618 -5.9439 2.2693 38 1 9.6341 -7.5730 2.0510 39 1 3.9093 -0.9514 3.1662 40 1 5.6104 -0.6295 2.6993 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095718024.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:36 Heat of formation + Delta-G solvation = 0.502770 kcal Electronic energy + Delta-G solvation = -27145.353299 eV Core-core repulsion = 23095.306991 eV Total energy + Delta-G solvation = -4050.046308 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.15051 -40.60070 -39.52957 -38.28298 -36.84228 -34.30778 -32.63143 -31.92103 -30.71189 -29.72196 -29.26796 -28.23308 -24.78738 -23.62887 -23.09636 -21.72704 -20.86555 -20.13198 -18.96194 -18.49496 -17.57398 -17.36113 -16.94207 -16.20411 -16.02068 -15.80548 -15.49827 -15.01712 -14.93711 -14.23744 -13.89252 -13.78566 -13.67250 -13.44871 -13.20944 -13.00996 -12.54391 -12.11439 -11.99168 -11.85106 -11.66955 -11.53706 -11.50217 -11.34508 -11.19827 -10.77523 -10.36890 -10.08788 -9.89881 -9.77269 -9.68718 -9.47242 -9.19064 -9.08120 -8.91870 -8.52909 -7.22967 -6.31055 -3.18752 0.17120 0.47076 1.55899 2.46078 3.03828 3.29714 3.32490 3.47481 3.64057 3.69934 4.05326 4.17158 4.51726 4.57309 4.59403 4.74902 4.95417 5.06230 5.15484 5.20512 5.39025 5.40060 5.43367 5.51352 5.58256 5.65043 5.73809 5.79124 5.88986 5.93432 6.09762 6.20483 6.26074 6.33585 6.38680 6.58038 6.68366 6.84361 6.86845 7.39940 7.50720 8.19060 8.28658 8.99776 9.52483 10.31129 11.18245 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.003219 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.714147 B = 8695.544406 C = 9840.802817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.024 4.024 3 Si 1.060 2.940 4 H -0.295 1.295 5 H -0.301 1.301 6 H -0.276 1.276 7 C -0.310 4.310 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.118 3.882 11 H 0.097 0.903 12 C -0.138 4.138 13 C -0.131 4.131 14 C 0.134 3.866 15 H 0.093 0.907 16 C 0.130 3.870 17 H 0.090 0.910 18 N -0.705 5.705 19 C 0.553 3.447 20 O -0.517 6.517 21 C -0.154 4.154 22 C -0.050 4.050 23 C -0.057 4.057 24 Cl -0.056 7.056 25 C -0.059 4.059 26 C -0.152 4.152 27 C 0.165 3.835 28 F -0.107 7.107 29 C -0.134 4.134 30 H 0.262 0.738 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.394 0.606 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.073 0.927 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.177 -8.005 6.101 28.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.223 4.223 3 Si 0.894 3.106 4 H -0.224 1.224 5 H -0.229 1.229 6 H -0.202 1.202 7 C -0.437 4.437 8 H 0.097 0.903 9 N -0.324 5.324 10 C 0.011 3.989 11 H 0.115 0.885 12 C -0.178 4.178 13 C -0.171 4.171 14 C 0.025 3.975 15 H 0.111 0.889 16 C 0.025 3.975 17 H 0.108 0.892 18 N -0.357 5.357 19 C 0.338 3.662 20 O -0.394 6.394 21 C -0.158 4.158 22 C -0.070 4.070 23 C -0.084 4.084 24 Cl -0.027 7.027 25 C -0.078 4.078 26 C -0.171 4.171 27 C 0.144 3.856 28 F -0.085 7.085 29 C -0.174 4.174 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.230 0.770 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.170 0.830 39 H 0.092 0.908 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 25.115 -6.865 5.998 26.718 hybrid contribution 0.568 -1.381 -0.057 1.494 sum 25.683 -8.246 5.941 27.621 Atomic orbital electron populations 1.70902 1.05611 1.29820 1.50488 1.25776 0.96421 1.00751 0.99396 0.83897 0.74925 0.75953 0.75786 1.22443 1.22882 1.20202 1.20108 0.84231 0.96411 1.42977 0.90323 1.46842 1.08573 1.10314 1.66643 1.23308 0.90698 0.93729 0.91123 0.88542 1.23059 0.97601 0.97234 0.99865 1.22815 0.98199 0.95904 1.00160 1.23162 0.88693 0.93048 0.92608 0.88899 1.22612 0.80052 0.95404 0.99460 0.89155 1.46097 1.10108 1.06067 1.73403 1.17819 0.87211 0.83233 0.77957 1.90880 1.46097 1.53994 1.48392 1.20172 0.94980 0.92489 1.08179 1.21119 0.89833 1.00268 0.95757 1.20780 0.89489 0.91051 1.07097 1.98402 1.48197 1.59884 1.96247 1.21077 1.00352 0.90364 0.96006 1.21138 0.90121 1.01699 1.04119 1.17777 0.85267 0.85766 0.96807 1.91642 1.59078 1.65904 1.91875 1.23226 1.00434 0.94477 0.99245 0.92733 0.91445 0.92622 0.92667 0.92352 0.77004 0.83572 0.83432 0.82982 0.90780 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.12 13.70 55.49 0.76 -28.35 16 2 C -0.02 -0.69 5.50 -17.43 -0.10 -0.79 16 3 Si 1.06 25.85 25.01 -169.99 -4.25 21.60 16 4 H -0.29 -6.78 6.60 56.52 0.37 -6.41 16 5 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.28 -6.13 4.94 56.52 0.28 -5.85 16 7 C -0.31 -8.82 10.81 -15.06 -0.16 -8.99 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 9 N -0.60 -14.29 2.83 -145.55 -0.41 -14.70 16 10 C 0.12 2.36 3.61 -62.55 -0.23 2.14 16 11 H 0.10 2.07 3.44 -51.93 -0.18 1.89 16 12 C -0.14 -2.34 6.20 -24.57 -0.15 -2.50 16 13 C -0.13 -2.21 6.30 -24.57 -0.15 -2.37 16 14 C 0.13 2.67 5.34 -62.81 -0.34 2.34 16 15 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 16 C 0.13 2.23 3.06 -65.44 -0.20 2.03 16 17 H 0.09 1.76 7.72 -51.93 -0.40 1.36 16 18 N -0.71 -9.38 3.59 -52.39 -0.19 -9.57 16 19 C 0.55 8.10 7.76 -12.40 -0.10 8.01 16 20 O -0.52 -9.84 15.08 5.30 0.08 -9.76 16 21 C -0.15 -1.73 5.88 -104.92 -0.62 -2.35 16 22 C -0.05 -0.42 9.31 -39.15 -0.36 -0.79 16 23 C -0.06 -0.42 6.31 -39.56 -0.25 -0.67 16 24 Cl -0.06 -0.39 28.95 -51.86 -1.50 -1.89 16 25 C -0.06 -0.37 9.82 -39.48 -0.39 -0.76 16 26 C -0.15 -1.11 10.01 -39.57 -0.40 -1.51 16 27 C 0.16 1.81 7.28 -38.96 -0.28 1.53 16 28 F -0.11 -1.48 15.55 2.25 0.04 -1.45 16 29 C -0.13 -2.20 6.23 -23.98 -0.15 -2.35 16 30 H 0.26 8.19 8.73 -40.82 -0.36 7.84 16 31 H 0.07 1.23 6.51 -51.93 -0.34 0.89 16 32 H 0.06 0.74 7.83 -51.93 -0.41 0.33 16 33 H 0.05 0.77 6.50 -51.93 -0.34 0.43 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.39 3.98 6.07 -40.82 -0.25 3.73 16 36 H 0.15 0.97 6.41 -52.48 -0.34 0.63 16 37 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.06 0.81 7.36 -51.93 -0.38 0.43 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -33.77 335.93 -8.75 -42.52 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -4.47 Total: 3.57 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -3.87 Total: -7.03 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 0.16 Total: -52.63 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -4.25 Total: 21.60 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.50 Total: -1.89 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.77 -8.75 -42.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095718024.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.026 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds