Wall clock time and date at job start Tue Mar 31 2020 20:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99778 * 2 1 4 4 H 1.48495 * 109.47444 * 89.99730 * 3 2 1 5 5 H 1.48507 * 109.47068 * 329.99449 * 3 2 1 6 6 H 1.48505 * 109.46869 * 209.99645 * 3 2 1 7 7 C 1.38805 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99880 * 20.96952 * 7 2 1 9 9 N 1.36940 * 120.00228 * 200.96376 * 7 2 1 10 10 C 1.50238 * 130.83810 * 9.93220 * 9 7 2 11 11 H 1.08995 * 115.85513 * 0.39326 * 10 9 7 12 12 C 1.55841 * 101.05100 * 234.00270 * 10 9 7 13 13 C 1.54222 * 103.56437 * 327.15097 * 12 10 9 14 14 C 1.50236 * 130.83770 * 190.27114 * 9 7 2 15 15 H 1.08998 * 115.85956 * 359.60837 * 14 9 7 16 16 C 1.55842 * 101.04878 * 233.93333 * 14 9 7 17 17 H 1.09004 * 110.62877 * 85.55364 * 16 14 9 18 18 N 1.46499 * 110.62637 * 208.41221 * 16 14 9 19 19 C 1.34776 * 120.00482 * 274.64891 * 18 16 14 20 20 O 1.21575 * 119.99561 * 359.97438 * 19 18 16 21 21 C 1.47692 * 120.00537 * 179.97438 * 19 18 16 22 22 C 1.39655 * 120.15887 * 359.72137 * 21 19 18 23 23 C 1.37967 * 119.86380 * 179.69685 * 22 21 19 24 24 Cl 1.73599 * 119.90343 * 180.29882 * 23 22 21 25 25 C 1.38566 * 120.19030 * 0.60572 * 23 22 21 26 26 C 1.38187 * 120.32648 * 359.67239 * 25 23 22 27 27 C 1.38321 * 120.13015 * 0.02562 * 26 25 23 28 28 F 1.35101 * 120.09367 * 180.02562 * 27 26 25 29 29 C 1.54844 * 103.44682 * 327.06225 * 16 14 9 30 30 H 0.96994 * 119.99703 * 174.93048 * 1 2 3 31 31 H 1.08998 * 110.62355 * 85.54996 * 12 10 9 32 32 H 1.09002 * 110.62689 * 208.41390 * 12 10 9 33 33 H 1.09001 * 110.64291 * 241.43381 * 13 12 10 34 34 H 1.09005 * 110.49442 * 118.49511 * 13 12 10 35 35 H 0.97008 * 120.00304 * 94.64575 * 18 16 14 36 36 H 1.08006 * 120.06817 * 359.97438 * 22 21 19 37 37 H 1.07999 * 119.83599 * 179.69471 * 25 23 22 38 38 H 1.08001 * 119.93205 * 180.02562 * 26 25 23 39 39 H 1.08994 * 110.63105 * 118.49146 * 29 16 14 40 40 H 1.09007 * 110.62979 * 241.51324 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 1.4000 5 1 1.4476 2.6527 -0.7002 6 1 3.5478 1.4402 -0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.5240 -2.1066 -0.3338 9 7 3.3117 -1.2411 0.4248 10 6 4.1525 -0.2029 1.1122 11 1 3.6589 0.7460 1.3217 12 6 5.3857 -0.1398 0.1613 13 6 5.5130 -1.5849 -0.3623 14 6 4.3403 -2.3329 0.3404 15 1 4.0120 -3.2599 -0.1297 16 6 4.7724 -2.4522 1.8329 17 1 4.1023 -3.1199 2.3746 18 7 6.1569 -2.9205 1.9335 19 6 6.4255 -4.2409 1.9056 20 8 5.5187 -5.0435 1.7975 21 6 7.8213 -4.7130 2.0064 22 6 8.8660 -3.7938 2.1249 23 6 10.1671 -4.2417 2.2249 24 17 11.4659 -3.1003 2.3800 25 6 10.4408 -5.5998 2.1955 26 6 9.4136 -6.5160 2.0728 27 6 8.1037 -6.0820 1.9778 28 9 7.1000 -6.9784 1.8583 29 6 4.6434 -1.0028 2.3621 30 1 -0.4849 -0.8367 -0.0742 31 1 5.2004 0.5496 -0.6624 32 1 6.2802 0.1524 0.7114 33 1 6.4715 -2.0155 -0.0726 34 1 5.3909 -1.6106 -1.4452 35 1 6.8805 -2.2802 2.0201 36 1 8.6555 -2.7346 2.1426 37 1 11.4618 -5.9439 2.2693 38 1 9.6341 -7.5730 2.0510 39 1 3.9093 -0.9514 3.1662 40 1 5.6104 -0.6295 2.6993 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095718024.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:35 Heat of formation + Delta-G solvation = -22.075196 kcal Electronic energy + Delta-G solvation = -27146.332353 eV Core-core repulsion = 23095.306991 eV Total energy + Delta-G solvation = -4051.025362 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.03731 -41.85275 -40.57652 -39.34677 -37.41161 -35.73251 -34.59106 -32.77902 -31.37833 -31.36767 -30.81302 -29.68261 -25.96457 -25.10224 -23.91957 -22.95703 -22.16006 -21.71721 -20.42469 -19.67567 -19.12657 -18.35722 -17.83037 -17.68841 -16.99539 -16.86996 -16.52390 -16.38181 -15.71838 -15.63031 -15.27678 -15.20513 -14.85656 -14.53351 -14.28962 -13.97884 -13.67028 -13.54673 -13.47364 -13.15262 -12.99024 -12.72030 -12.61890 -12.48876 -12.30683 -12.06771 -11.91873 -11.55198 -11.47393 -11.17626 -11.09789 -11.05181 -10.74363 -10.44838 -10.11423 -9.72270 -9.24216 -8.63021 -5.41739 -0.54919 -0.14488 0.99422 1.36692 1.55183 1.60290 1.72447 1.93275 2.43200 2.55983 2.99236 3.01201 3.20068 3.38960 3.50798 3.71793 3.83153 3.89085 3.93010 3.98823 4.21504 4.25993 4.31473 4.41650 4.49657 4.56236 4.61779 4.68801 4.74688 4.86562 4.87686 4.94263 4.97690 5.05528 5.15717 5.31551 5.32723 5.45161 5.53277 5.55779 6.02445 6.42602 6.75332 7.11126 7.37906 8.22592 8.87358 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.003219 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.714147 B = 8695.544406 C = 9840.802817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.086 4.086 3 Si 1.105 2.895 4 H -0.269 1.269 5 H -0.315 1.315 6 H -0.239 1.239 7 C -0.298 4.298 8 H 0.030 0.970 9 N -0.632 5.632 10 C 0.102 3.898 11 H 0.088 0.912 12 C -0.129 4.129 13 C -0.118 4.118 14 C 0.119 3.881 15 H 0.056 0.944 16 C 0.146 3.854 17 H 0.054 0.946 18 N -0.687 5.687 19 C 0.551 3.449 20 O -0.573 6.573 21 C -0.172 4.172 22 C -0.042 4.042 23 C -0.057 4.057 24 Cl -0.045 7.045 25 C -0.041 4.041 26 C -0.140 4.140 27 C 0.134 3.866 28 F -0.135 7.135 29 C -0.121 4.121 30 H 0.243 0.757 31 H 0.058 0.942 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.417 0.583 36 H 0.169 0.831 37 H 0.182 0.818 38 H 0.177 0.823 39 H 0.063 0.937 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.454 -6.326 7.360 33.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.278 4.278 3 Si 0.932 3.068 4 H -0.196 1.196 5 H -0.244 1.244 6 H -0.163 1.163 7 C -0.426 4.426 8 H 0.048 0.952 9 N -0.357 5.357 10 C -0.003 4.003 11 H 0.105 0.895 12 C -0.167 4.167 13 C -0.158 4.158 14 C 0.011 3.989 15 H 0.074 0.926 16 C 0.039 3.961 17 H 0.072 0.928 18 N -0.340 5.340 19 C 0.339 3.661 20 O -0.453 6.453 21 C -0.176 4.176 22 C -0.061 4.061 23 C -0.084 4.084 24 Cl -0.015 7.015 25 C -0.060 4.060 26 C -0.159 4.159 27 C 0.113 3.887 28 F -0.113 7.113 29 C -0.160 4.160 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.131 0.869 33 H 0.111 0.889 34 H 0.064 0.936 35 H 0.256 0.744 36 H 0.186 0.814 37 H 0.199 0.801 38 H 0.195 0.805 39 H 0.082 0.918 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 31.504 -5.199 7.286 32.751 hybrid contribution -1.274 -2.109 -0.432 2.501 sum 30.231 -7.308 6.854 31.848 Atomic orbital electron populations 1.71041 1.07124 1.28644 1.54276 1.27277 0.96296 1.04732 0.99492 0.83421 0.74934 0.71047 0.77441 1.19621 1.24413 1.16350 1.19875 0.86842 0.94629 1.41285 0.95188 1.46885 1.07904 1.13141 1.67734 1.23654 0.91043 0.92668 0.92967 0.89460 1.23057 0.98072 0.96358 0.99253 1.22733 0.97992 0.95954 0.99085 1.23287 0.89255 0.91294 0.95027 0.92588 1.22058 0.81611 0.95726 0.96658 0.92767 1.45766 1.08989 1.06290 1.72961 1.18391 0.88340 0.82947 0.76407 1.90861 1.48230 1.55427 1.50825 1.19861 0.93356 0.93183 1.11204 1.21247 0.89439 1.00710 0.94676 1.20894 0.89394 0.91775 1.06314 1.98418 1.47438 1.59562 1.96124 1.21493 1.01528 0.89698 0.93268 1.21401 0.88509 1.03346 1.02646 1.18283 0.86145 0.85587 0.98646 1.91573 1.60537 1.66765 1.92423 1.23173 1.02961 0.92614 0.97275 0.94826 0.92341 0.86914 0.88874 0.93601 0.74359 0.81382 0.80072 0.80539 0.91827 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.23 13.70 21.65 0.30 -63.94 16 2 C -0.09 -5.25 5.50 84.86 0.47 -4.78 16 3 Si 1.11 52.19 25.01 68.60 1.72 53.91 16 4 H -0.27 -11.45 6.60 99.48 0.66 -10.79 16 5 H -0.31 -15.49 7.11 99.48 0.71 -14.79 16 6 H -0.24 -9.75 4.94 99.48 0.49 -9.26 16 7 C -0.30 -17.97 10.81 84.03 0.91 -17.06 16 8 H 0.03 2.03 8.06 -2.91 -0.02 2.00 16 9 N -0.63 -30.61 2.83 -614.41 -1.74 -32.35 16 10 C 0.10 3.77 3.61 46.39 0.17 3.94 16 11 H 0.09 3.44 3.44 -2.39 -0.01 3.43 16 12 C -0.13 -3.71 6.20 31.99 0.20 -3.51 16 13 C -0.12 -3.66 6.30 31.99 0.20 -3.46 16 14 C 0.12 4.84 5.34 46.23 0.25 5.08 16 15 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 16 C 0.15 4.90 3.06 46.60 0.14 5.05 16 17 H 0.05 2.22 7.72 -2.38 -0.02 2.20 16 18 N -0.69 -16.54 3.59 -437.93 -1.57 -18.11 16 19 C 0.55 15.86 7.76 86.74 0.67 16.53 16 20 O -0.57 -22.96 15.08 -3.95 -0.06 -23.02 16 21 C -0.17 -3.55 5.88 -20.06 -0.12 -3.66 16 22 C -0.04 -0.53 9.31 22.55 0.21 -0.32 16 23 C -0.06 -0.58 6.31 22.28 0.14 -0.43 16 24 Cl -0.04 -0.40 28.95 -2.72 -0.08 -0.48 16 25 C -0.04 -0.32 9.82 22.34 0.22 -0.10 16 26 C -0.14 -1.62 10.01 22.28 0.22 -1.40 16 27 C 0.13 2.80 7.28 22.67 0.17 2.97 16 28 F -0.13 -3.87 15.55 44.97 0.70 -3.17 16 29 C -0.12 -3.57 6.23 32.37 0.20 -3.37 16 30 H 0.24 16.43 8.73 -92.71 -0.81 15.62 16 31 H 0.06 1.83 6.51 -2.39 -0.02 1.82 16 32 H 0.11 2.05 7.83 -2.39 -0.02 2.03 16 33 H 0.09 2.16 6.50 -2.39 -0.02 2.14 16 34 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.42 6.18 6.07 -92.70 -0.56 5.61 16 36 H 0.17 1.25 6.41 -2.91 -0.02 1.23 16 37 H 0.18 0.24 8.06 -2.91 -0.02 0.22 16 38 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.12 2.22 7.36 -2.38 -0.02 2.21 16 Total: -1.00 -84.32 335.93 3.55 -80.77 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.24 Total: 10.91 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 4.05 Total: -4.52 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -3.01 Total: -114.40 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.06 Total: -23.02 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.70 Total: -3.17 kcal Atomic # 14 Polarization: 52.19 SS G_CDS: 1.72 Total: 53.91 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.48 kcal Total: -84.32 3.55 -80.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095718024.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.697 kcal (2) G-P(sol) polarization free energy of solvation -84.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds