Wall clock time and date at job start Tue Mar 31 2020 20:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86807 * 119.99882 * 2 1 4 4 H 1.48507 * 109.46783 * 274.98022 * 3 2 1 5 5 H 1.48500 * 109.47276 * 34.97754 * 3 2 1 6 6 H 1.48495 * 109.47000 * 154.98465 * 3 2 1 7 7 C 1.38812 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00072 * 186.23093 * 7 2 1 9 9 N 1.36937 * 119.99453 * 6.23712 * 7 2 1 10 10 C 1.50230 * 130.84168 * 352.00765 * 9 7 2 11 11 H 1.09000 * 115.86018 * 0.33621 * 10 9 7 12 12 C 1.55842 * 101.05177 * 233.94655 * 10 9 7 13 13 C 1.55880 * 103.52950 * 327.66362 * 12 10 9 14 14 C 1.50241 * 130.83367 * 171.97776 * 9 7 2 15 15 H 1.08998 * 115.86234 * 359.66729 * 14 9 7 16 16 C 1.55843 * 101.05146 * 233.98585 * 14 9 7 17 17 H 1.09005 * 110.62078 * 85.55705 * 16 14 9 18 18 N 1.46499 * 110.62976 * 208.57385 * 16 14 9 19 19 C 1.34777 * 120.00084 * 274.46952 * 18 16 14 20 20 O 1.21569 * 119.99829 * 359.97438 * 19 18 16 21 21 C 1.47723 * 120.00041 * 179.97438 * 19 18 16 22 22 C 1.39662 * 120.11196 * 359.72210 * 21 19 18 23 23 C 1.37835 * 119.90217 * 179.74240 * 22 21 19 24 24 C 1.38639 * 120.13272 * 0.51047 * 23 22 21 25 25 F 1.35105 * 119.88533 * 179.74284 * 24 23 22 26 26 C 1.38734 * 120.22976 * 359.77031 * 24 23 22 27 27 Cl 1.73602 * 119.95289 * 179.97438 * 26 24 23 28 28 C 1.37965 * 120.09640 * 359.97404 * 26 24 23 29 29 C 1.54850 * 103.44787 * 327.06712 * 16 14 9 30 30 H 0.97002 * 120.00034 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.63028 * 85.54843 * 12 10 9 32 32 H 1.09003 * 110.62960 * 208.41130 * 12 10 9 33 33 H 1.08995 * 110.09895 * 241.13602 * 13 12 10 34 34 H 1.09002 * 111.60055 * 117.80615 * 13 12 10 35 35 H 0.97000 * 119.99992 * 94.47132 * 18 16 14 36 36 H 1.07996 * 120.05012 * 359.97438 * 22 21 19 37 37 H 1.08001 * 119.93610 * 180.26186 * 23 22 21 38 38 H 1.07997 * 120.07225 * 180.02562 * 28 26 24 39 39 H 1.09000 * 110.62723 * 241.50888 * 29 16 14 40 40 H 1.08996 * 110.62589 * 118.48476 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3923 2.1072 -1.3949 5 1 1.5041 2.6201 0.8026 6 1 3.5963 1.4121 0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0855 -1.2048 0.1021 9 7 1.3316 -2.3845 -0.1278 10 6 -0.1420 -2.6770 -0.1241 11 1 -0.7976 -1.8144 -0.0051 12 6 -0.2282 -3.7633 0.9899 13 6 1.1311 -4.5169 0.8704 14 6 1.8316 -3.7887 -0.3162 15 1 2.9142 -3.9053 -0.3662 16 6 1.0494 -4.2153 -1.5948 17 1 1.5814 -3.9012 -2.4929 18 7 0.8272 -5.6633 -1.6049 19 6 1.7746 -6.4871 -2.0952 20 8 2.8133 -6.0285 -2.5295 21 6 1.5508 -7.9472 -2.1049 22 6 0.3608 -8.4770 -1.6012 23 6 0.1542 -9.8397 -1.6172 24 6 1.1296 -10.6856 -2.1224 25 9 0.9240 -12.0209 -2.1309 26 6 2.3162 -10.1657 -2.6188 27 17 3.5329 -11.2315 -3.2491 28 6 2.5307 -8.8028 -2.6122 29 6 -0.2949 -3.4580 -1.4641 30 1 -0.4850 0.8401 -0.0004 31 1 -0.3136 -3.2997 1.9727 32 1 -1.0685 -4.4335 0.8086 33 1 0.9580 -5.5656 0.6290 34 1 1.7229 -4.4240 1.7811 35 1 -0.0017 -6.0292 -1.2588 36 1 -0.3981 -7.8197 -1.2032 37 1 -0.7676 -10.2497 -1.2317 38 1 3.4544 -8.3985 -2.9991 39 1 -1.1270 -4.1598 -1.4067 40 1 -0.4297 -2.7683 -2.2973 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095944436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:28 Heat of formation + Delta-G solvation = -8.815080 kcal Electronic energy + Delta-G solvation = -26638.812667 eV Core-core repulsion = 22588.362307 eV Total energy + Delta-G solvation = -4050.450360 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.42092 -40.53387 -39.27659 -37.97731 -36.86669 -34.16925 -32.45273 -31.46934 -31.12446 -29.26112 -29.06497 -27.57945 -24.60636 -23.82285 -23.50064 -21.52648 -20.80938 -19.59003 -18.87690 -18.36823 -17.71972 -17.12464 -16.79557 -16.21937 -15.69379 -15.50177 -15.13920 -14.85649 -14.40210 -14.27050 -14.07431 -13.90457 -13.83222 -13.25779 -13.22181 -12.38204 -12.34646 -11.91501 -11.87298 -11.77857 -11.55069 -11.38165 -11.11277 -10.97491 -10.94029 -10.85666 -10.28502 -10.12333 -9.99765 -9.85655 -9.51218 -9.43014 -9.37355 -9.17641 -8.91891 -8.60439 -6.94976 -5.78643 -3.15477 0.19430 0.57768 1.56498 2.47671 3.19758 3.37995 3.43264 3.43915 3.44946 3.55054 4.12197 4.38896 4.47780 4.50656 4.65062 5.03371 5.14342 5.27223 5.33378 5.42630 5.46902 5.56446 5.70433 5.74904 5.78175 5.88272 6.01317 6.04507 6.10952 6.22334 6.26026 6.46620 6.53250 6.58303 6.74866 6.88616 6.93120 7.19898 7.50186 7.61197 7.74706 8.11490 8.29356 9.05870 9.68727 10.49364 11.31704 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.026945 B = 0.002504 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.917392 B =11180.364519 C =11807.565506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.212 4.212 8 H 0.079 0.921 9 N -0.589 5.589 10 C 0.154 3.846 11 H 0.153 0.847 12 C -0.138 4.138 13 C -0.130 4.130 14 C 0.128 3.872 15 H 0.085 0.915 16 C 0.128 3.872 17 H 0.085 0.915 18 N -0.703 5.703 19 C 0.553 3.447 20 O -0.531 6.531 21 C -0.124 4.124 22 C -0.054 4.054 23 C -0.147 4.147 24 C 0.128 3.872 25 F -0.123 7.123 26 C -0.083 4.083 27 Cl -0.044 7.044 28 C -0.026 4.026 29 C -0.139 4.139 30 H 0.254 0.746 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.394 0.606 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.158 0.842 39 H 0.054 0.946 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.640 -21.076 -3.358 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.340 4.340 8 H 0.097 0.903 9 N -0.310 5.310 10 C 0.047 3.953 11 H 0.170 0.830 12 C -0.178 4.178 13 C -0.170 4.170 14 C 0.019 3.981 15 H 0.104 0.896 16 C 0.022 3.978 17 H 0.103 0.897 18 N -0.353 5.353 19 C 0.338 3.662 20 O -0.409 6.409 21 C -0.127 4.127 22 C -0.073 4.073 23 C -0.166 4.166 24 C 0.108 3.892 25 F -0.102 7.102 26 C -0.110 4.110 27 Cl -0.015 7.015 28 C -0.045 4.045 29 C -0.179 4.179 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.230 0.770 36 H 0.163 0.837 37 H 0.170 0.830 38 H 0.175 0.825 39 H 0.073 0.927 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.760 -20.494 -3.692 20.898 hybrid contribution 0.120 0.136 0.110 0.212 sum -1.640 -20.358 -3.582 20.735 Atomic orbital electron populations 1.69462 1.05057 1.25094 1.57268 1.24738 0.95638 0.97534 1.02573 0.86044 0.78666 0.83237 0.77533 1.21604 1.21770 1.20644 1.19060 0.90993 0.81907 1.42065 0.90289 1.46472 1.01584 1.00339 1.82565 1.23729 0.87904 0.94977 0.88661 0.82972 1.23249 0.94957 0.98332 1.01245 1.23078 0.97515 0.97317 0.99070 1.23200 0.96308 0.86489 0.92105 0.89644 1.22718 0.98392 0.76090 1.00577 0.89665 1.46181 1.19317 1.08057 1.61792 1.17955 0.84277 0.85272 0.78672 1.90811 1.26220 1.77053 1.46786 1.20141 0.95279 0.94463 1.02864 1.21338 0.96175 0.94616 0.95188 1.21077 0.99677 0.93169 1.02660 1.17636 0.93696 0.78097 0.99811 1.91562 1.94933 1.29677 1.94004 1.20878 0.91763 0.92400 1.06005 1.98403 1.53504 1.64419 1.85181 1.21107 0.99778 0.89327 0.94314 1.23287 0.93684 0.98447 1.02487 0.93520 0.92733 0.93548 0.93265 0.92809 0.77041 0.83725 0.83022 0.82460 0.92738 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.49 10.52 55.49 0.58 -24.91 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 21.65 29.56 -169.99 -5.02 16.62 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.21 -5.73 10.57 -15.06 -0.16 -5.89 16 8 H 0.08 2.10 7.84 -52.48 -0.41 1.69 16 9 N -0.59 -14.18 2.98 -145.82 -0.43 -14.62 16 10 C 0.15 3.30 4.71 -62.81 -0.30 3.00 16 11 H 0.15 3.77 5.57 -51.93 -0.29 3.48 16 12 C -0.14 -2.49 6.46 -23.68 -0.15 -2.64 16 13 C -0.13 -2.26 6.42 -23.67 -0.15 -2.42 16 14 C 0.13 2.57 5.29 -62.80 -0.33 2.24 16 15 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 16 C 0.13 2.24 3.07 -65.44 -0.20 2.04 16 17 H 0.09 1.70 7.72 -51.93 -0.40 1.30 16 18 N -0.70 -9.41 3.61 -52.37 -0.19 -9.60 16 19 C 0.55 7.82 7.76 -12.38 -0.10 7.72 16 20 O -0.53 -9.63 16.08 5.31 0.09 -9.55 16 21 C -0.12 -1.34 5.87 -104.97 -0.62 -1.95 16 22 C -0.05 -0.43 9.54 -39.20 -0.37 -0.80 16 23 C -0.15 -1.07 10.01 -39.58 -0.40 -1.47 16 24 C 0.13 1.17 7.28 -39.25 -0.29 0.89 16 25 F -0.12 -1.19 16.83 2.25 0.04 -1.15 16 26 C -0.08 -0.83 6.32 -39.50 -0.25 -1.08 16 27 Cl -0.04 -0.43 28.60 -51.86 -1.48 -1.92 16 28 C -0.03 -0.28 9.37 -39.16 -0.37 -0.64 16 29 C -0.14 -2.48 6.20 -24.23 -0.15 -2.63 16 30 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.69 7.82 -51.93 -0.41 0.28 16 33 H 0.05 0.71 6.56 -51.93 -0.34 0.37 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.39 4.05 6.09 -40.82 -0.25 3.80 16 36 H 0.15 0.79 6.40 -52.49 -0.34 0.45 16 37 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.16 1.75 7.65 -52.49 -0.40 1.34 16 39 H 0.05 0.78 7.34 -51.93 -0.38 0.40 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 345.79 15.07 5.21 5.21 Total: -1.00 -30.04 345.79 -9.60 -39.64 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -4.46 Total: 4.24 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -3.92 Total: -3.97 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.04 Total: -49.12 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.48 Total: -1.92 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.04 -9.60 -39.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095944436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.823 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds