Wall clock time and date at job start Tue Mar 31 2020 20:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86807 * 119.99882 * 2 1 4 4 H 1.48507 * 109.46783 * 274.98022 * 3 2 1 5 5 H 1.48500 * 109.47276 * 34.97754 * 3 2 1 6 6 H 1.48495 * 109.47000 * 154.98465 * 3 2 1 7 7 C 1.38812 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00072 * 186.23093 * 7 2 1 9 9 N 1.36937 * 119.99453 * 6.23712 * 7 2 1 10 10 C 1.50230 * 130.84168 * 352.00765 * 9 7 2 11 11 H 1.09000 * 115.86018 * 0.33621 * 10 9 7 12 12 C 1.55842 * 101.05177 * 233.94655 * 10 9 7 13 13 C 1.55880 * 103.52950 * 327.66362 * 12 10 9 14 14 C 1.50241 * 130.83367 * 171.97776 * 9 7 2 15 15 H 1.08998 * 115.86234 * 359.66729 * 14 9 7 16 16 C 1.55843 * 101.05146 * 233.98585 * 14 9 7 17 17 H 1.09005 * 110.62078 * 85.55705 * 16 14 9 18 18 N 1.46499 * 110.62976 * 208.57385 * 16 14 9 19 19 C 1.34777 * 120.00084 * 274.46952 * 18 16 14 20 20 O 1.21569 * 119.99829 * 359.97438 * 19 18 16 21 21 C 1.47723 * 120.00041 * 179.97438 * 19 18 16 22 22 C 1.39662 * 120.11196 * 359.72210 * 21 19 18 23 23 C 1.37835 * 119.90217 * 179.74240 * 22 21 19 24 24 C 1.38639 * 120.13272 * 0.51047 * 23 22 21 25 25 F 1.35105 * 119.88533 * 179.74284 * 24 23 22 26 26 C 1.38734 * 120.22976 * 359.77031 * 24 23 22 27 27 Cl 1.73602 * 119.95289 * 179.97438 * 26 24 23 28 28 C 1.37965 * 120.09640 * 359.97404 * 26 24 23 29 29 C 1.54850 * 103.44787 * 327.06712 * 16 14 9 30 30 H 0.97002 * 120.00034 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.63028 * 85.54843 * 12 10 9 32 32 H 1.09003 * 110.62960 * 208.41130 * 12 10 9 33 33 H 1.08995 * 110.09895 * 241.13602 * 13 12 10 34 34 H 1.09002 * 111.60055 * 117.80615 * 13 12 10 35 35 H 0.97000 * 119.99992 * 94.47132 * 18 16 14 36 36 H 1.07996 * 120.05012 * 359.97438 * 22 21 19 37 37 H 1.08001 * 119.93610 * 180.26186 * 23 22 21 38 38 H 1.07997 * 120.07225 * 180.02562 * 28 26 24 39 39 H 1.09000 * 110.62723 * 241.50888 * 29 16 14 40 40 H 1.08996 * 110.62589 * 118.48476 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3923 2.1072 -1.3949 5 1 1.5041 2.6201 0.8026 6 1 3.5963 1.4121 0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0855 -1.2048 0.1021 9 7 1.3316 -2.3845 -0.1278 10 6 -0.1420 -2.6770 -0.1241 11 1 -0.7976 -1.8144 -0.0051 12 6 -0.2282 -3.7633 0.9899 13 6 1.1311 -4.5169 0.8704 14 6 1.8316 -3.7887 -0.3162 15 1 2.9142 -3.9053 -0.3662 16 6 1.0494 -4.2153 -1.5948 17 1 1.5814 -3.9012 -2.4929 18 7 0.8272 -5.6633 -1.6049 19 6 1.7746 -6.4871 -2.0952 20 8 2.8133 -6.0285 -2.5295 21 6 1.5508 -7.9472 -2.1049 22 6 0.3608 -8.4770 -1.6012 23 6 0.1542 -9.8397 -1.6172 24 6 1.1296 -10.6856 -2.1224 25 9 0.9240 -12.0209 -2.1309 26 6 2.3162 -10.1657 -2.6188 27 17 3.5329 -11.2315 -3.2491 28 6 2.5307 -8.8028 -2.6122 29 6 -0.2949 -3.4580 -1.4641 30 1 -0.4850 0.8401 -0.0004 31 1 -0.3136 -3.2997 1.9727 32 1 -1.0685 -4.4335 0.8086 33 1 0.9580 -5.5656 0.6290 34 1 1.7229 -4.4240 1.7811 35 1 -0.0017 -6.0292 -1.2588 36 1 -0.3981 -7.8197 -1.2032 37 1 -0.7676 -10.2497 -1.2317 38 1 3.4544 -8.3985 -2.9991 39 1 -1.1270 -4.1598 -1.4067 40 1 -0.4297 -2.7683 -2.2973 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095944436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:27 Heat of formation + Delta-G solvation = -25.354973 kcal Electronic energy + Delta-G solvation = -26639.529890 eV Core-core repulsion = 22588.362307 eV Total energy + Delta-G solvation = -4051.167584 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.13203 -41.69863 -40.45596 -39.09403 -37.62373 -35.57283 -34.27346 -32.17575 -32.03828 -30.93560 -30.58653 -29.06686 -26.24127 -24.96274 -24.20665 -22.86322 -22.02201 -21.20459 -20.21995 -19.42822 -18.84170 -18.47341 -17.77316 -16.95091 -16.90552 -16.69396 -16.52018 -16.31926 -15.89656 -15.38365 -15.21655 -15.01118 -14.58654 -14.15973 -14.09649 -13.97260 -13.87305 -13.42964 -13.21110 -12.89979 -12.79999 -12.60742 -12.58344 -12.55539 -12.32920 -12.12367 -11.98743 -11.88858 -11.56385 -11.23259 -11.03848 -10.96633 -10.75130 -10.22004 -10.08530 -9.83049 -8.83016 -7.80977 -5.18377 -0.56895 -0.09986 0.83337 1.46124 1.48047 1.55657 1.59334 2.06983 2.50154 2.53304 2.85671 3.32985 3.46144 3.50477 3.62928 3.86654 3.93307 3.96354 4.12063 4.18023 4.33118 4.43792 4.50854 4.64056 4.66990 4.69482 4.74173 4.82741 4.88504 4.99997 5.01667 5.09823 5.18845 5.22540 5.35252 5.45296 5.49228 5.57000 5.76850 5.91154 6.29500 6.56508 7.06527 7.22091 7.70009 8.56770 9.26558 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.026945 B = 0.002504 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.917392 B =11180.364519 C =11807.565506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.059 4.059 3 Si 0.970 3.030 4 H -0.291 1.291 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.226 4.226 8 H 0.068 0.932 9 N -0.619 5.619 10 C 0.137 3.863 11 H 0.118 0.882 12 C -0.126 4.126 13 C -0.116 4.116 14 C 0.117 3.883 15 H 0.062 0.938 16 C 0.148 3.852 17 H 0.054 0.946 18 N -0.687 5.687 19 C 0.555 3.445 20 O -0.579 6.579 21 C -0.136 4.136 22 C -0.036 4.036 23 C -0.131 4.131 24 C 0.126 3.874 25 F -0.126 7.126 26 C -0.093 4.093 27 Cl -0.050 7.050 28 C -0.035 4.035 29 C -0.124 4.124 30 H 0.249 0.751 31 H 0.034 0.966 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.416 0.584 36 H 0.180 0.820 37 H 0.189 0.811 38 H 0.143 0.857 39 H 0.103 0.897 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.903 -23.720 -2.737 24.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.252 4.252 3 Si 0.800 3.200 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.355 4.355 8 H 0.086 0.914 9 N -0.341 5.341 10 C 0.031 3.969 11 H 0.136 0.864 12 C -0.165 4.165 13 C -0.156 4.156 14 C 0.009 3.991 15 H 0.081 0.919 16 C 0.041 3.959 17 H 0.072 0.928 18 N -0.339 5.339 19 C 0.343 3.657 20 O -0.460 6.460 21 C -0.140 4.140 22 C -0.055 4.055 23 C -0.149 4.149 24 C 0.106 3.894 25 F -0.104 7.104 26 C -0.120 4.120 27 Cl -0.021 7.021 28 C -0.055 4.055 29 C -0.163 4.163 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.255 0.745 36 H 0.198 0.802 37 H 0.206 0.794 38 H 0.160 0.840 39 H 0.121 0.879 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.052 -23.200 -3.061 23.749 hybrid contribution 0.857 0.859 -0.103 1.218 sum -3.195 -22.341 -3.163 22.789 Atomic orbital electron populations 1.69679 1.05791 1.25097 1.58323 1.25389 0.96518 0.99995 1.03293 0.85173 0.77763 0.79977 0.77113 1.21812 1.21792 1.20146 1.19259 0.90981 0.83756 1.41500 0.91368 1.46732 1.03215 1.00898 1.83276 1.23671 0.85874 0.95439 0.91913 0.86434 1.23150 0.96812 0.97820 0.98691 1.22984 0.96517 0.98983 0.97070 1.23339 0.95763 0.85288 0.94727 0.91935 1.22106 0.97490 0.78549 0.97795 0.92813 1.45824 1.20231 1.06016 1.61861 1.18423 0.83306 0.86654 0.77287 1.90801 1.28308 1.78180 1.48724 1.19832 0.97010 0.91948 1.05164 1.21654 0.95139 0.95352 0.93316 1.21450 1.00101 0.92471 1.00876 1.17886 0.93730 0.78261 0.99550 1.91563 1.94889 1.30005 1.93978 1.20898 0.92328 0.92023 1.06778 1.98399 1.53944 1.64423 1.85345 1.20997 0.99646 0.89842 0.94966 1.23113 0.95185 0.98512 0.99517 0.94093 0.94734 0.88718 0.89278 0.93933 0.74468 0.80240 0.79359 0.83966 0.87905 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.51 10.52 21.65 0.23 -53.28 16 2 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 3 Si 0.97 45.74 29.56 68.60 2.03 47.76 16 4 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.23 -12.63 10.57 84.03 0.89 -11.74 16 8 H 0.07 3.81 7.84 -2.91 -0.02 3.79 16 9 N -0.62 -30.47 2.98 -615.26 -1.83 -32.30 16 10 C 0.14 5.79 4.71 46.23 0.22 6.00 16 11 H 0.12 5.91 5.57 -2.39 -0.01 5.90 16 12 C -0.13 -4.17 6.46 32.57 0.21 -3.96 16 13 C -0.12 -3.75 6.42 32.57 0.21 -3.54 16 14 C 0.12 4.69 5.29 46.23 0.24 4.94 16 15 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 16 C 0.15 5.04 3.07 46.61 0.14 5.18 16 17 H 0.05 2.20 7.72 -2.38 -0.02 2.18 16 18 N -0.69 -16.19 3.61 -437.89 -1.58 -17.77 16 19 C 0.56 14.74 7.76 86.75 0.67 15.42 16 20 O -0.58 -21.31 16.08 -3.93 -0.06 -21.38 16 21 C -0.14 -2.57 5.87 -20.09 -0.12 -2.69 16 22 C -0.04 -0.38 9.54 22.52 0.21 -0.16 16 23 C -0.13 -1.21 10.01 22.27 0.22 -0.99 16 24 C 0.13 1.90 7.28 22.48 0.16 2.06 16 25 F -0.13 -2.06 16.83 44.97 0.76 -1.30 16 26 C -0.09 -1.70 6.32 22.32 0.14 -1.56 16 27 Cl -0.05 -0.95 28.60 -2.72 -0.08 -1.03 16 28 C -0.03 -0.71 9.37 22.54 0.21 -0.50 16 29 C -0.12 -4.17 6.20 32.21 0.20 -3.97 16 30 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 2.24 7.82 -2.39 -0.02 2.22 16 33 H 0.09 2.15 6.56 -2.39 -0.02 2.13 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.42 6.11 6.09 -92.71 -0.56 5.54 16 36 H 0.18 0.60 6.40 -2.91 -0.02 0.59 16 37 H 0.19 0.46 8.06 -2.91 -0.02 0.43 16 38 H 0.14 3.28 7.65 -2.91 -0.02 3.25 16 39 H 0.10 2.44 7.34 -2.39 -0.02 2.42 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -70.83 345.79 4.09 -66.75 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.54 Total: 10.86 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 4.09 Total: 1.69 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -3.18 Total: -103.35 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.06 Total: -21.38 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.76 Total: -1.30 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.03 kcal Total: -70.83 4.09 -66.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095944436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.394 kcal (2) G-P(sol) polarization free energy of solvation -70.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds