Wall clock time and date at job start Tue Mar 31 2020 20:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99760 * 2 1 4 4 H 1.48493 * 109.46967 * 269.99631 * 3 2 1 5 5 H 1.48497 * 109.47044 * 30.00276 * 3 2 1 6 6 H 1.48508 * 109.46579 * 149.99982 * 3 2 1 7 7 C 1.38805 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00345 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99877 * 0.02562 * 7 2 1 10 10 C 1.50229 * 130.83735 * 359.66218 * 9 7 2 11 11 H 1.08998 * 115.85962 * 359.67771 * 10 9 7 12 12 C 1.56854 * 100.58633 * 234.63023 * 10 9 7 13 13 C 1.54858 * 103.35524 * 326.65610 * 12 10 9 14 14 C 1.50242 * 130.83701 * 179.97438 * 9 7 2 15 15 H 1.09003 * 115.86029 * 359.61364 * 14 9 7 16 16 C 1.55837 * 101.04854 * 233.93253 * 14 9 7 17 17 H 1.09000 * 110.62794 * 85.55674 * 16 14 9 18 18 N 1.46504 * 110.62408 * 208.57299 * 16 14 9 19 19 C 1.34778 * 120.00279 * 274.02727 * 18 16 14 20 20 O 1.21580 * 119.99754 * 0.02562 * 19 18 16 21 21 C 1.47691 * 120.00208 * 180.02562 * 19 18 16 22 22 C 1.39675 * 120.16028 * 359.72621 * 21 19 18 23 23 C 1.37849 * 119.90001 * 179.71683 * 22 21 19 24 24 C 1.38456 * 120.23183 * 0.55897 * 23 22 21 25 25 C 1.38297 * 120.32542 * 359.71771 * 24 23 22 26 26 Cl 1.73596 * 119.95202 * 179.97438 * 25 24 23 27 27 C 1.38440 * 120.09206 * 359.97438 * 25 24 23 28 28 F 1.35102 * 120.11438 * 179.97438 * 27 25 24 29 29 C 1.55475 * 103.33123 * 326.97576 * 16 14 9 30 30 H 0.97006 * 120.00033 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.43789 * 208.30867 * 12 10 9 32 32 H 1.08996 * 111.04377 * 85.29632 * 12 10 9 33 33 H 1.08999 * 110.63002 * 241.78564 * 13 12 10 34 34 H 1.08996 * 110.76143 * 118.83089 * 13 12 10 35 35 H 0.96991 * 119.99985 * 94.03102 * 18 16 14 36 36 H 1.07998 * 120.04756 * 0.02562 * 22 21 19 37 37 H 1.08001 * 119.88451 * 180.27078 * 23 22 21 38 38 H 1.07995 * 119.83487 * 179.73604 * 24 23 22 39 39 H 1.09001 * 110.61424 * 241.58597 * 29 16 14 40 40 H 1.09004 * 110.75532 * 118.48542 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1500 -2.6705 0.0043 11 1 -0.8013 -1.7966 0.0161 12 6 -0.2593 -3.6058 1.2588 13 6 1.0817 -4.3802 1.2455 14 6 1.8187 -3.8072 -0.0029 15 1 2.9013 -3.9343 -0.0096 16 6 1.0662 -4.3838 -1.2397 17 1 1.6234 -4.1851 -2.1552 18 7 0.8325 -5.8210 -1.0778 19 6 1.7819 -6.7038 -1.4463 20 8 2.8324 -6.3075 -1.9127 21 6 1.5461 -8.1527 -1.2835 22 6 0.3428 -8.6115 -0.7428 23 6 0.1260 -9.9652 -0.5987 24 6 1.1017 -10.8716 -0.9775 25 6 2.2989 -10.4276 -1.5086 26 17 3.5158 -11.5726 -1.9796 27 6 2.5283 -9.0713 -1.6651 28 9 3.6979 -8.6370 -2.1835 29 6 -0.2803 -3.6065 -1.2345 30 1 -0.4850 0.8401 0.0004 31 1 -1.0996 -4.2915 1.1502 32 1 -0.3569 -3.0227 2.1744 33 1 0.9065 -5.4498 1.1304 34 1 1.6517 -4.1813 2.1530 35 1 -0.0054 -6.1372 -0.7054 36 1 -0.4187 -7.9069 -0.4427 37 1 -0.8063 -10.3198 -0.1846 38 1 0.9268 -11.9306 -0.8578 39 1 -1.1188 -4.2921 -1.1114 40 1 -0.3922 -3.0215 -2.1474 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095958110.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:11 Heat of formation + Delta-G solvation = -5.616637 kcal Electronic energy + Delta-G solvation = -27003.012297 eV Core-core repulsion = 22952.700632 eV Total energy + Delta-G solvation = -4050.311665 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.07249 -40.38181 -39.23900 -38.05240 -36.84955 -34.10519 -32.46051 -31.56671 -30.84486 -29.31658 -29.01072 -27.55704 -24.74662 -23.97756 -23.06784 -21.50380 -20.83480 -19.57520 -18.82724 -18.28426 -17.41469 -17.06670 -16.73984 -16.06914 -15.82501 -15.31597 -15.04346 -14.98544 -14.78935 -14.14092 -13.88998 -13.77118 -13.56185 -13.29614 -12.72094 -12.37648 -12.32364 -12.03548 -11.89180 -11.78910 -11.53580 -11.42432 -11.07095 -10.95117 -10.91504 -10.84950 -10.23266 -10.10820 -9.92558 -9.78230 -9.46737 -9.43801 -9.28109 -9.11722 -8.95826 -8.57806 -6.93799 -5.74652 -3.12505 0.25880 0.55340 1.57710 2.57363 3.17938 3.39322 3.41481 3.44884 3.46325 3.69423 4.26244 4.30471 4.44293 4.51091 4.67951 4.99666 5.16249 5.35640 5.36833 5.40873 5.50760 5.56204 5.71794 5.75775 5.81628 5.92504 6.02918 6.06184 6.15174 6.24713 6.28355 6.49337 6.54667 6.60028 6.77429 6.91958 6.95582 7.21821 7.50415 7.63135 7.77318 8.14309 8.32938 9.08846 9.71316 10.50964 11.35022 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.025846 B = 0.002704 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.098850 B =10353.028808 C =11029.072013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.210 4.210 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.153 3.847 11 H 0.155 0.845 12 C -0.137 4.137 13 C -0.130 4.130 14 C 0.128 3.872 15 H 0.085 0.915 16 C 0.128 3.872 17 H 0.085 0.915 18 N -0.702 5.702 19 C 0.550 3.450 20 O -0.521 6.521 21 C -0.154 4.154 22 C -0.055 4.055 23 C -0.126 4.126 24 C -0.062 4.062 25 C -0.088 4.088 26 Cl -0.045 7.045 27 C 0.168 3.832 28 F -0.100 7.100 29 C -0.138 4.138 30 H 0.254 0.746 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.394 0.606 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.054 0.946 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.003 -23.130 -0.606 23.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.748 3.252 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.338 4.338 8 H 0.097 0.903 9 N -0.310 5.310 10 C 0.047 3.953 11 H 0.172 0.828 12 C -0.176 4.176 13 C -0.170 4.170 14 C 0.019 3.981 15 H 0.103 0.897 16 C 0.022 3.978 17 H 0.103 0.897 18 N -0.353 5.353 19 C 0.335 3.665 20 O -0.398 6.398 21 C -0.158 4.158 22 C -0.073 4.073 23 C -0.144 4.144 24 C -0.081 4.081 25 C -0.116 4.116 26 Cl -0.016 7.016 27 C 0.146 3.854 28 F -0.078 7.078 29 C -0.178 4.178 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.229 0.771 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.073 0.927 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.038 -22.518 -1.009 22.745 hybrid contribution 0.396 0.466 0.085 0.618 sum -2.641 -22.052 -0.923 22.229 Atomic orbital electron populations 1.69426 1.04993 1.25002 1.57824 1.24690 0.95657 0.97513 1.02856 0.86024 0.78523 0.83098 0.77590 1.21625 1.21681 1.20740 1.19075 0.90413 0.81834 1.42441 0.90283 1.46493 1.01614 0.98799 1.84113 1.23961 0.87745 0.95195 0.88435 0.82804 1.23220 0.94935 0.98200 1.01294 1.22902 0.97719 0.97414 0.98949 1.23198 0.96345 0.86150 0.92397 0.89667 1.22833 0.98333 0.76082 1.00507 0.89661 1.46118 1.18389 1.07386 1.63448 1.17838 0.84650 0.84705 0.79275 1.90869 1.25199 1.79683 1.44011 1.20234 0.95442 0.94384 1.05771 1.21396 0.95027 0.96528 0.94398 1.21131 0.99885 0.92298 1.01110 1.21159 0.90434 1.01412 0.95099 1.20944 0.94160 0.88896 1.07555 1.98400 1.54093 1.58543 1.90612 1.17406 0.82829 0.89865 0.95294 1.91652 1.43497 1.89916 1.82730 1.23359 0.93657 0.98340 1.02420 0.93554 0.93788 0.92561 0.93278 0.92963 0.77069 0.83858 0.83624 0.83556 0.92712 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.86 10.46 55.49 0.58 -25.28 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.92 21.95 29.55 -169.99 -5.02 16.92 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.21 -5.75 10.59 -15.06 -0.16 -5.91 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.59 -14.49 2.97 -145.22 -0.43 -14.92 16 10 C 0.15 3.34 4.72 -62.26 -0.29 3.05 16 11 H 0.16 3.86 5.52 -51.93 -0.29 3.57 16 12 C -0.14 -2.54 6.50 -23.67 -0.15 -2.69 16 13 C -0.13 -2.34 6.34 -24.21 -0.15 -2.50 16 14 C 0.13 2.66 5.30 -62.78 -0.33 2.33 16 15 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 16 C 0.13 2.33 3.10 -65.10 -0.20 2.13 16 17 H 0.09 1.76 7.71 -51.93 -0.40 1.36 16 18 N -0.70 -10.01 3.62 -52.06 -0.19 -10.20 16 19 C 0.55 8.59 7.77 -12.40 -0.10 8.50 16 20 O -0.52 -10.45 15.07 5.30 0.08 -10.37 16 21 C -0.15 -1.87 5.88 -104.92 -0.62 -2.48 16 22 C -0.05 -0.44 9.54 -39.19 -0.37 -0.81 16 23 C -0.13 -0.76 10.03 -39.64 -0.40 -1.16 16 24 C -0.06 -0.43 9.82 -39.48 -0.39 -0.82 16 25 C -0.09 -0.88 6.32 -39.49 -0.25 -1.13 16 26 Cl -0.05 -0.44 28.61 -51.86 -1.48 -1.93 16 27 C 0.17 2.15 7.26 -38.93 -0.28 1.87 16 28 F -0.10 -1.58 15.12 2.25 0.03 -1.54 16 29 C -0.14 -2.51 6.25 -23.92 -0.15 -2.66 16 30 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.04 0.67 7.88 -51.93 -0.41 0.26 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.74 6.56 -51.93 -0.34 0.40 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.39 4.30 6.09 -40.82 -0.25 4.05 16 36 H 0.14 0.81 6.40 -52.49 -0.34 0.47 16 37 H 0.15 0.42 8.06 -52.49 -0.42 0.00 16 38 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.05 0.81 7.41 -51.93 -0.38 0.42 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 344.02 15.07 5.18 5.18 Total: -1.00 -31.84 344.02 -9.68 -41.52 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -4.49 Total: 3.31 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -3.94 Total: -2.69 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.04 Total: -50.40 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.03 Total: -1.54 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.48 Total: -1.93 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.84 -9.68 -41.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095958110.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.902 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds