Wall clock time and date at job start Tue Mar 31 2020 20:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99760 * 2 1 4 4 H 1.48493 * 109.46967 * 269.99631 * 3 2 1 5 5 H 1.48497 * 109.47044 * 30.00276 * 3 2 1 6 6 H 1.48508 * 109.46579 * 149.99982 * 3 2 1 7 7 C 1.38805 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00345 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99877 * 0.02562 * 7 2 1 10 10 C 1.50229 * 130.83735 * 359.66218 * 9 7 2 11 11 H 1.08998 * 115.85962 * 359.67771 * 10 9 7 12 12 C 1.56854 * 100.58633 * 234.63023 * 10 9 7 13 13 C 1.54858 * 103.35524 * 326.65610 * 12 10 9 14 14 C 1.50242 * 130.83701 * 179.97438 * 9 7 2 15 15 H 1.09003 * 115.86029 * 359.61364 * 14 9 7 16 16 C 1.55837 * 101.04854 * 233.93253 * 14 9 7 17 17 H 1.09000 * 110.62794 * 85.55674 * 16 14 9 18 18 N 1.46504 * 110.62408 * 208.57299 * 16 14 9 19 19 C 1.34778 * 120.00279 * 274.02727 * 18 16 14 20 20 O 1.21580 * 119.99754 * 0.02562 * 19 18 16 21 21 C 1.47691 * 120.00208 * 180.02562 * 19 18 16 22 22 C 1.39675 * 120.16028 * 359.72621 * 21 19 18 23 23 C 1.37849 * 119.90001 * 179.71683 * 22 21 19 24 24 C 1.38456 * 120.23183 * 0.55897 * 23 22 21 25 25 C 1.38297 * 120.32542 * 359.71771 * 24 23 22 26 26 Cl 1.73596 * 119.95202 * 179.97438 * 25 24 23 27 27 C 1.38440 * 120.09206 * 359.97438 * 25 24 23 28 28 F 1.35102 * 120.11438 * 179.97438 * 27 25 24 29 29 C 1.55475 * 103.33123 * 326.97576 * 16 14 9 30 30 H 0.97006 * 120.00033 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.43789 * 208.30867 * 12 10 9 32 32 H 1.08996 * 111.04377 * 85.29632 * 12 10 9 33 33 H 1.08999 * 110.63002 * 241.78564 * 13 12 10 34 34 H 1.08996 * 110.76143 * 118.83089 * 13 12 10 35 35 H 0.96991 * 119.99985 * 94.03102 * 18 16 14 36 36 H 1.07998 * 120.04756 * 0.02562 * 22 21 19 37 37 H 1.08001 * 119.88451 * 180.27078 * 23 22 21 38 38 H 1.07995 * 119.83487 * 179.73604 * 24 23 22 39 39 H 1.09001 * 110.61424 * 241.58597 * 29 16 14 40 40 H 1.09004 * 110.75532 * 118.48542 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1500 -2.6705 0.0043 11 1 -0.8013 -1.7966 0.0161 12 6 -0.2593 -3.6058 1.2588 13 6 1.0817 -4.3802 1.2455 14 6 1.8187 -3.8072 -0.0029 15 1 2.9013 -3.9343 -0.0096 16 6 1.0662 -4.3838 -1.2397 17 1 1.6234 -4.1851 -2.1552 18 7 0.8325 -5.8210 -1.0778 19 6 1.7819 -6.7038 -1.4463 20 8 2.8324 -6.3075 -1.9127 21 6 1.5461 -8.1527 -1.2835 22 6 0.3428 -8.6115 -0.7428 23 6 0.1260 -9.9652 -0.5987 24 6 1.1017 -10.8716 -0.9775 25 6 2.2989 -10.4276 -1.5086 26 17 3.5158 -11.5726 -1.9796 27 6 2.5283 -9.0713 -1.6651 28 9 3.6979 -8.6370 -2.1835 29 6 -0.2803 -3.6065 -1.2345 30 1 -0.4850 0.8401 0.0004 31 1 -1.0996 -4.2915 1.1502 32 1 -0.3569 -3.0227 2.1744 33 1 0.9065 -5.4498 1.1304 34 1 1.6517 -4.1813 2.1530 35 1 -0.0054 -6.1372 -0.7054 36 1 -0.4187 -7.9069 -0.4427 37 1 -0.8063 -10.3198 -0.1846 38 1 0.9268 -11.9306 -0.8578 39 1 -1.1188 -4.2921 -1.1114 40 1 -0.3922 -3.0215 -2.1474 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095958110.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:10 Heat of formation + Delta-G solvation = -24.594761 kcal Electronic energy + Delta-G solvation = -27003.835250 eV Core-core repulsion = 22952.700632 eV Total energy + Delta-G solvation = -4051.134618 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.05742 -41.63486 -40.35494 -39.23250 -37.58620 -35.58297 -34.29507 -32.46528 -31.52501 -30.98797 -30.64178 -29.10644 -26.29759 -25.21043 -23.82897 -22.85216 -22.10874 -21.25389 -20.23445 -19.43989 -18.79850 -18.24402 -17.76148 -17.07568 -16.92989 -16.72654 -16.45644 -16.32450 -15.87867 -15.65615 -15.31698 -15.01679 -14.40516 -14.13378 -14.04931 -13.91449 -13.50539 -13.38081 -13.22048 -12.90368 -12.78948 -12.67986 -12.60923 -12.57583 -12.36378 -12.16529 -11.99604 -11.89913 -11.56181 -11.22154 -11.08925 -10.93484 -10.81485 -10.26496 -9.97425 -9.82678 -8.86312 -7.80542 -5.19434 -0.48198 -0.12959 0.86982 1.45403 1.46657 1.54603 1.68199 2.01528 2.48923 2.52035 2.93222 3.32397 3.39548 3.55584 3.72320 3.80474 3.92505 4.08240 4.11381 4.14238 4.33109 4.42081 4.47995 4.60185 4.70567 4.74806 4.78912 4.80808 4.97327 5.00991 5.06678 5.13378 5.15166 5.18934 5.32436 5.46448 5.52253 5.57120 5.73747 5.89088 6.28317 6.51294 7.05624 7.18447 7.68380 8.54248 9.26061 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.025846 B = 0.002704 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.098850 B =10353.028808 C =11029.072013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.060 4.060 3 Si 0.974 3.026 4 H -0.290 1.290 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.226 4.226 8 H 0.067 0.933 9 N -0.619 5.619 10 C 0.137 3.863 11 H 0.122 0.878 12 C -0.124 4.124 13 C -0.116 4.116 14 C 0.116 3.884 15 H 0.058 0.942 16 C 0.147 3.853 17 H 0.051 0.949 18 N -0.684 5.684 19 C 0.549 3.451 20 O -0.578 6.578 21 C -0.175 4.175 22 C -0.043 4.043 23 C -0.103 4.103 24 C -0.047 4.047 25 C -0.097 4.097 26 Cl -0.052 7.052 27 C 0.129 3.871 28 F -0.132 7.132 29 C -0.121 4.121 30 H 0.250 0.750 31 H 0.093 0.907 32 H 0.035 0.965 33 H 0.088 0.912 34 H 0.040 0.960 35 H 0.416 0.584 36 H 0.176 0.824 37 H 0.195 0.805 38 H 0.180 0.820 39 H 0.104 0.896 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.120 -26.448 0.648 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.253 4.253 3 Si 0.803 3.197 4 H -0.217 1.217 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.355 4.355 8 H 0.085 0.915 9 N -0.341 5.341 10 C 0.031 3.969 11 H 0.139 0.861 12 C -0.163 4.163 13 C -0.155 4.155 14 C 0.008 3.992 15 H 0.076 0.924 16 C 0.040 3.960 17 H 0.069 0.931 18 N -0.337 5.337 19 C 0.337 3.663 20 O -0.458 6.458 21 C -0.179 4.179 22 C -0.061 4.061 23 C -0.121 4.121 24 C -0.065 4.065 25 C -0.124 4.124 26 Cl -0.023 7.023 27 C 0.108 3.892 28 F -0.110 7.110 29 C -0.161 4.161 30 H 0.060 0.940 31 H 0.112 0.888 32 H 0.054 0.946 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.256 0.744 36 H 0.193 0.807 37 H 0.212 0.788 38 H 0.198 0.802 39 H 0.123 0.877 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.196 -25.896 0.264 26.628 hybrid contribution 1.350 1.366 -0.303 1.944 sum -4.846 -24.530 -0.039 25.004 Atomic orbital electron populations 1.69645 1.05713 1.25097 1.58634 1.25361 0.96580 0.99991 1.03382 0.85144 0.77545 0.79759 0.77270 1.21700 1.21497 1.20370 1.19267 0.90382 0.83718 1.42172 0.91527 1.46751 1.03278 0.99292 1.84812 1.23914 0.85649 0.95606 0.91699 0.86072 1.23107 0.96716 0.98026 0.98442 1.22805 0.96772 0.99364 0.96567 1.23321 0.95609 0.85068 0.95197 0.92381 1.22237 0.97653 0.78455 0.97678 0.93100 1.45752 1.19233 1.05336 1.63373 1.18430 0.83661 0.86419 0.77800 1.90846 1.27618 1.80922 1.46434 1.19996 0.97529 0.91589 1.08769 1.21802 0.93472 0.98355 0.92485 1.21690 1.00884 0.90915 0.98628 1.21689 0.88804 1.03508 0.92527 1.21134 0.95301 0.87678 1.08316 1.98396 1.54825 1.58300 1.90796 1.17881 0.82505 0.91477 0.97312 1.91564 1.45376 1.90439 1.83648 1.23187 0.94976 0.98155 0.99779 0.94044 0.88820 0.94561 0.89380 0.94158 0.74399 0.80698 0.78802 0.80232 0.87749 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.18 10.46 21.65 0.23 -53.95 16 2 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16 3 Si 0.97 46.47 29.55 68.60 2.03 48.49 16 4 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 7 C -0.23 -12.96 10.59 84.03 0.89 -12.07 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 9 N -0.62 -31.40 2.97 -613.35 -1.82 -33.22 16 10 C 0.14 5.94 4.72 46.58 0.22 6.16 16 11 H 0.12 6.18 5.52 -2.39 -0.01 6.16 16 12 C -0.12 -4.26 6.50 32.58 0.21 -4.05 16 13 C -0.12 -3.95 6.34 32.23 0.20 -3.74 16 14 C 0.12 4.92 5.30 46.24 0.24 5.16 16 15 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 16 C 0.15 5.33 3.10 46.82 0.15 5.47 16 17 H 0.05 2.21 7.71 -2.39 -0.02 2.19 16 18 N -0.68 -17.93 3.62 -436.89 -1.58 -19.51 16 19 C 0.55 16.87 7.77 86.74 0.67 17.54 16 20 O -0.58 -24.39 15.07 -3.97 -0.06 -24.45 16 21 C -0.17 -3.89 5.88 -20.06 -0.12 -4.01 16 22 C -0.04 -0.46 9.54 22.52 0.21 -0.24 16 23 C -0.10 -0.56 10.03 22.23 0.22 -0.34 16 24 C -0.05 -0.42 9.82 22.34 0.22 -0.20 16 25 C -0.10 -1.74 6.32 22.33 0.14 -1.60 16 26 Cl -0.05 -0.97 28.61 -2.72 -0.08 -1.05 16 27 C 0.13 3.27 7.26 22.69 0.16 3.44 16 28 F -0.13 -4.43 15.12 44.97 0.68 -3.75 16 29 C -0.12 -4.23 6.25 32.42 0.20 -4.03 16 30 H 0.25 13.97 8.31 -92.70 -0.77 13.20 16 31 H 0.09 2.31 7.88 -2.39 -0.02 2.29 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 2.29 6.56 -2.39 -0.02 2.28 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.42 6.94 6.09 -92.71 -0.56 6.38 16 36 H 0.18 0.70 6.40 -2.91 -0.02 0.68 16 37 H 0.19 -0.64 8.06 -2.91 -0.02 -0.66 16 38 H 0.18 0.44 8.06 -2.91 -0.02 0.42 16 39 H 0.10 2.57 7.41 -2.39 -0.02 2.55 16 40 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -78.41 344.02 4.03 -74.37 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 0.54 Total: 8.50 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 4.10 Total: 4.56 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -3.17 Total: -106.68 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.06 Total: -24.45 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.68 Total: -3.75 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.05 kcal Total: -78.41 4.03 -74.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095958110.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.779 kcal (2) G-P(sol) polarization free energy of solvation -78.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds