Wall clock time and date at job start Tue Mar 31 2020 20:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99915 * 2 1 4 4 H 1.48502 * 109.47317 * 85.01488 * 3 2 1 5 5 H 1.48506 * 109.46669 * 325.01567 * 3 2 1 6 6 H 1.48492 * 109.47134 * 205.01947 * 3 2 1 7 7 C 1.38808 * 120.00455 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00543 * 189.13208 * 7 2 1 9 9 N 1.36942 * 119.99790 * 9.13431 * 7 2 1 10 10 C 1.50239 * 130.83525 * 9.84407 * 9 7 2 11 11 H 1.09000 * 115.86428 * 0.38945 * 10 9 7 12 12 C 1.55847 * 101.04643 * 234.00031 * 10 9 7 13 13 C 1.54221 * 103.56568 * 327.14851 * 12 10 9 14 14 C 1.50231 * 130.84030 * 190.17643 * 9 7 2 15 15 H 1.09006 * 115.86142 * 359.61581 * 14 9 7 16 16 C 1.55841 * 101.05541 * 233.93201 * 14 9 7 17 17 H 1.09011 * 110.62414 * 85.55132 * 16 14 9 18 18 N 1.46500 * 110.62916 * 208.41169 * 16 14 9 19 19 C 1.34774 * 120.00026 * 274.14584 * 18 16 14 20 20 O 1.21562 * 120.00187 * 0.02562 * 19 18 16 21 21 C 1.47771 * 119.99618 * 179.97438 * 19 18 16 22 22 C 1.39608 * 120.14625 * 359.73510 * 21 19 18 23 23 C 1.38123 * 119.83762 * 179.72081 * 22 21 19 24 24 F 1.35102 * 119.93349 * 180.26884 * 23 22 21 25 25 C 1.38623 * 120.13069 * 0.56900 * 23 22 21 26 26 C 1.38238 * 120.29315 * 359.68163 * 25 23 22 27 27 C 1.38160 * 120.15642 * 0.04083 * 26 25 23 28 28 Cl 1.73598 * 120.06528 * 179.97438 * 27 26 25 29 29 C 1.54848 * 103.44492 * 327.06329 * 16 14 9 30 30 H 0.96994 * 120.00047 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.62811 * 85.55642 * 12 10 9 32 32 H 1.09006 * 110.62371 * 208.41102 * 12 10 9 33 33 H 1.09005 * 110.64439 * 241.43013 * 13 12 10 34 34 H 1.09003 * 110.49115 * 118.49581 * 13 12 10 35 35 H 0.97004 * 119.99841 * 94.15499 * 18 16 14 36 36 H 1.07996 * 120.08190 * 359.97438 * 22 21 19 37 37 H 1.08002 * 119.85780 * 179.69986 * 25 23 22 38 38 H 1.08004 * 119.92285 * 180.02562 * 26 25 23 39 39 H 1.09006 * 110.62866 * 118.48473 * 29 16 14 40 40 H 1.08996 * 110.63069 * 241.50325 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3924 2.1074 1.3948 5 1 1.5042 2.6200 -0.8028 6 1 3.5964 1.4122 -0.5921 7 6 2.0104 -1.2021 0.0005 8 1 3.0800 -1.2079 0.1490 9 7 1.3387 -2.3806 -0.1872 10 6 -0.0802 -2.6473 -0.6029 11 1 -0.6921 -1.7665 -0.7977 12 6 -0.5608 -3.5748 0.5535 13 6 0.7093 -4.3601 0.9391 14 6 1.7920 -3.8048 -0.0346 15 1 2.8290 -3.9435 0.2713 16 6 1.4188 -4.3884 -1.4306 17 1 2.2183 -4.2066 -2.1489 18 7 1.1326 -5.8217 -1.3311 19 6 2.1381 -6.7162 -1.4028 20 8 3.2826 -6.3337 -1.5496 21 6 1.8494 -8.1619 -1.3018 22 6 0.5368 -8.6042 -1.1266 23 6 0.2735 -9.9573 -1.0388 24 9 -0.9966 -10.3876 -0.8747 25 6 1.3105 -10.8742 -1.1125 26 6 2.6128 -10.4420 -1.2808 27 6 2.8892 -9.0917 -1.3757 28 17 4.5255 -8.5516 -1.5863 29 6 0.1447 -3.6000 -1.8215 30 1 -0.4850 0.8400 -0.0004 31 1 -0.9151 -2.9837 1.3980 32 1 -1.3421 -4.2502 0.2046 33 1 0.5630 -5.4288 0.7817 34 1 0.9836 -4.1575 1.9744 35 1 0.2193 -6.1269 -1.2137 36 1 -0.2711 -7.8903 -1.0640 37 1 1.1002 -11.9309 -1.0385 38 1 3.4161 -11.1617 -1.3379 39 1 0.3122 -3.0272 -2.7337 40 1 -0.7030 -4.2747 -1.9409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096059084.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:46 Heat of formation + Delta-G solvation = -16.617225 kcal Electronic energy + Delta-G solvation = -27022.712845 eV Core-core repulsion = 22971.924158 eV Total energy + Delta-G solvation = -4050.788687 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.98161 -41.69976 -40.47726 -39.01289 -37.36524 -35.53159 -34.29734 -32.65620 -31.29602 -31.05225 -30.65030 -29.14285 -26.29406 -25.24241 -23.84686 -22.80226 -22.06696 -21.27410 -20.22255 -19.48078 -18.73838 -17.96093 -17.64289 -17.10784 -16.78711 -16.76139 -16.60173 -16.38600 -15.93949 -15.52557 -15.41752 -14.80683 -14.53255 -14.20490 -14.03881 -13.84743 -13.56295 -13.44046 -13.22855 -12.84981 -12.80978 -12.64875 -12.61305 -12.36949 -12.28887 -12.19444 -11.98078 -11.91751 -11.61675 -11.28133 -10.89418 -10.80447 -10.59565 -10.38167 -9.99739 -9.67403 -8.83517 -7.84533 -5.19857 -0.50706 -0.11463 1.11852 1.45691 1.46472 1.55914 1.70000 2.04912 2.49459 2.51097 3.01189 3.31292 3.43604 3.51790 3.58149 3.90332 3.94659 4.04817 4.09660 4.14849 4.31620 4.42897 4.47080 4.55476 4.60047 4.70375 4.75672 4.78538 4.89161 4.96341 5.00498 5.06481 5.14031 5.19875 5.32941 5.46510 5.53742 5.56287 5.73928 5.87201 6.20952 6.54679 7.02576 7.22105 7.67350 8.55649 9.25884 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.003125 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.567453 B = 8959.063100 C =10071.316688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.059 4.059 3 Si 0.971 3.029 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.228 4.228 8 H 0.068 0.932 9 N -0.617 5.617 10 C 0.146 3.854 11 H 0.108 0.892 12 C -0.121 4.121 13 C -0.117 4.117 14 C 0.119 3.881 15 H 0.065 0.935 16 C 0.151 3.849 17 H 0.060 0.940 18 N -0.692 5.692 19 C 0.546 3.454 20 O -0.549 6.549 21 C -0.111 4.111 22 C -0.107 4.107 23 C 0.093 3.907 24 F -0.132 7.132 25 C -0.102 4.102 26 C -0.084 4.084 27 C -0.015 4.015 28 Cl -0.046 7.046 29 C -0.128 4.128 30 H 0.249 0.751 31 H 0.031 0.969 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.036 0.964 35 H 0.411 0.589 36 H 0.165 0.835 37 H 0.183 0.817 38 H 0.176 0.824 39 H 0.054 0.946 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.017 -25.855 -3.503 26.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.252 4.252 3 Si 0.800 3.200 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.357 4.357 8 H 0.086 0.914 9 N -0.339 5.339 10 C 0.040 3.960 11 H 0.125 0.875 12 C -0.160 4.160 13 C -0.156 4.156 14 C 0.011 3.989 15 H 0.084 0.916 16 C 0.044 3.956 17 H 0.078 0.922 18 N -0.346 5.346 19 C 0.333 3.667 20 O -0.427 6.427 21 C -0.115 4.115 22 C -0.126 4.126 23 C 0.074 3.926 24 F -0.111 7.111 25 C -0.121 4.121 26 C -0.102 4.102 27 C -0.044 4.044 28 Cl -0.016 7.016 29 C -0.168 4.168 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.055 0.945 35 H 0.249 0.751 36 H 0.182 0.818 37 H 0.200 0.800 38 H 0.193 0.807 39 H 0.073 0.927 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.078 -25.197 -3.603 25.476 hybrid contribution 0.179 1.391 0.285 1.431 sum -0.900 -23.806 -3.318 24.053 Atomic orbital electron populations 1.69849 1.05886 1.25260 1.57779 1.25421 0.96469 1.00186 1.03157 0.85169 0.77748 0.79861 0.77179 1.21647 1.21618 1.20189 1.19239 0.90998 0.83940 1.41525 0.91429 1.46723 1.09905 0.99479 1.77806 1.23464 0.86178 0.95072 0.91306 0.87480 1.22772 0.96696 0.97744 0.98784 1.22694 0.95952 0.99200 0.97803 1.23307 0.95988 0.84852 0.94730 0.91640 1.22086 0.97818 0.78411 0.97291 0.92164 1.45886 1.10290 1.05586 1.72789 1.18381 0.85197 0.86063 0.77086 1.90879 1.21530 1.80907 1.49384 1.19512 0.93364 0.92608 1.06064 1.21395 0.95970 0.95727 0.99528 1.17634 0.79844 0.92308 1.02813 1.91560 1.36478 1.90202 1.92855 1.21652 0.90356 1.02051 0.98031 1.21223 0.98211 0.92615 0.98166 1.21349 0.86619 0.94428 1.01961 1.98434 1.17734 1.90607 1.94856 1.23232 0.96288 0.98268 0.98971 0.94157 0.95037 0.89385 0.89648 0.94506 0.75065 0.81756 0.80000 0.80670 0.92690 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.61 10.75 21.65 0.23 -54.38 16 2 C -0.06 -3.32 5.47 84.86 0.46 -2.86 16 3 Si 0.97 46.29 29.56 68.60 2.03 48.32 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.23 -12.98 10.55 84.03 0.89 -12.10 16 8 H 0.07 3.84 7.84 -2.91 -0.02 3.82 16 9 N -0.62 -31.23 2.97 -614.40 -1.83 -33.06 16 10 C 0.15 6.42 4.65 46.39 0.22 6.64 16 11 H 0.11 5.53 5.90 -2.39 -0.01 5.51 16 12 C -0.12 -4.46 6.41 31.99 0.21 -4.25 16 13 C -0.12 -4.17 6.29 31.99 0.20 -3.97 16 14 C 0.12 4.99 5.35 46.23 0.25 5.24 16 15 H 0.07 2.97 8.14 -2.38 -0.02 2.95 16 16 C 0.15 5.31 3.07 46.60 0.14 5.45 16 17 H 0.06 2.45 7.70 -2.38 -0.02 2.43 16 18 N -0.69 -18.17 3.59 -437.84 -1.57 -19.74 16 19 C 0.55 15.60 7.76 86.76 0.67 16.27 16 20 O -0.55 -20.15 13.69 -3.91 -0.05 -20.20 16 21 C -0.11 -2.39 5.88 -20.08 -0.12 -2.50 16 22 C -0.11 -1.65 9.52 22.57 0.21 -1.43 16 23 C 0.09 1.24 7.29 22.33 0.16 1.40 16 24 F -0.13 -1.89 17.26 44.97 0.78 -1.11 16 25 C -0.10 -0.98 10.02 22.36 0.22 -0.76 16 26 C -0.08 -1.02 9.82 22.25 0.22 -0.80 16 27 C -0.02 -0.31 6.35 22.60 0.14 -0.17 16 28 Cl -0.05 -1.15 26.02 -2.72 -0.07 -1.22 16 29 C -0.13 -4.43 6.23 32.37 0.20 -4.22 16 30 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 2.45 7.83 -2.38 -0.02 2.43 16 33 H 0.09 2.40 6.49 -2.38 -0.02 2.38 16 34 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.41 7.82 6.06 -92.71 -0.56 7.26 16 36 H 0.17 1.86 6.40 -2.91 -0.02 1.84 16 37 H 0.18 0.55 8.06 -2.91 -0.02 0.52 16 38 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 40 H 0.10 2.55 7.36 -2.39 -0.02 2.53 16 Total: -1.00 -70.81 342.40 4.13 -66.67 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.54 Total: 12.78 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 4.08 Total: 1.94 kcal Atomic # 7 Polarization: -104.01 SS G_CDS: -3.17 Total: -107.18 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.05 Total: -20.20 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.78 Total: -1.11 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.07 Total: -1.22 kcal Total: -70.81 4.13 -66.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096059084.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.055 kcal (2) G-P(sol) polarization free energy of solvation -70.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds