Wall clock time and date at job start Tue Mar 31 2020 20:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48502 * 109.47039 * 270.00011 * 3 2 1 5 5 H 1.48500 * 109.47199 * 30.00099 * 3 2 1 6 6 H 1.48500 * 109.47023 * 150.00040 * 3 2 1 7 7 C 1.38810 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99582 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.50241 * 130.84272 * 0.02562 * 9 7 2 11 11 H 1.08994 * 115.85396 * 0.34463 * 10 9 7 12 12 C 1.55842 * 101.05148 * 233.95347 * 10 9 7 13 13 C 1.55867 * 103.53327 * 327.66441 * 12 10 9 14 14 C 1.50241 * 130.83733 * 179.97438 * 9 7 2 15 15 H 1.08999 * 115.85702 * 359.66155 * 14 9 7 16 16 C 1.55848 * 101.05138 * 233.98249 * 14 9 7 17 17 H 1.09001 * 110.62398 * 85.55248 * 16 14 9 18 18 N 1.46499 * 110.62795 * 208.57219 * 16 14 9 19 19 C 1.34778 * 119.99921 * 274.02519 * 18 16 14 20 20 O 1.21556 * 119.99933 * 359.97438 * 19 18 16 21 21 C 1.47789 * 119.99935 * 180.02562 * 19 18 16 22 22 C 1.39623 * 120.11845 * 359.72282 * 21 19 18 23 23 C 1.37894 * 119.91561 * 179.76950 * 22 21 19 24 24 C 1.38489 * 120.15881 * 0.48398 * 23 22 21 25 25 Cl 1.73600 * 119.87869 * 179.76614 * 24 23 22 26 26 C 1.38698 * 120.23918 * 359.78907 * 24 23 22 27 27 F 1.35102 * 119.95554 * 179.97438 * 26 24 23 28 28 C 1.38128 * 120.08638 * 359.95350 * 26 24 23 29 29 C 1.54850 * 103.44495 * 327.06474 * 16 14 9 30 30 H 0.96996 * 119.99521 * 359.97438 * 1 2 3 31 31 H 1.09003 * 110.62706 * 85.55260 * 12 10 9 32 32 H 1.09004 * 110.62337 * 208.40872 * 12 10 9 33 33 H 1.09004 * 110.10177 * 241.14317 * 13 12 10 34 34 H 1.08992 * 111.60510 * 117.80573 * 13 12 10 35 35 H 0.96993 * 120.00088 * 94.02333 * 18 16 14 36 36 H 1.08006 * 120.04477 * 359.97438 * 22 21 19 37 37 H 1.07995 * 119.92710 * 180.23160 * 23 22 21 38 38 H 1.08001 * 120.08646 * 180.02562 * 28 26 24 39 39 H 1.09001 * 110.62667 * 241.51171 * 29 16 14 40 40 H 1.08996 * 110.63188 * 118.48536 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1500 -2.6706 -0.0005 11 1 -0.8013 -1.7966 -0.0073 12 6 -0.2751 -3.6102 1.2365 13 6 1.0805 -4.3794 1.2488 14 6 1.8187 -3.8072 0.0005 15 1 2.9012 -3.9343 -0.0053 16 6 1.0671 -4.3846 -1.2366 17 1 1.6252 -4.1864 -2.1518 18 7 0.8333 -5.8216 -1.0741 19 6 1.7830 -6.7047 -1.4413 20 8 2.8333 -6.3087 -1.9079 21 6 1.5469 -8.1544 -1.2778 22 6 0.3433 -8.6117 -0.7379 23 6 0.1255 -9.9655 -0.5916 24 6 1.1017 -10.8721 -0.9697 25 17 0.8223 -12.5745 -0.7768 26 6 2.3020 -10.4248 -1.5016 27 9 3.2506 -11.3142 -1.8681 28 6 2.5286 -9.0711 -1.6574 29 6 -0.2739 -3.6103 -1.2369 30 1 -0.4849 0.8400 0.0004 31 1 -0.3831 -3.0279 2.1516 32 1 -1.1158 -4.2935 1.1162 33 1 0.9053 -5.4491 1.1341 34 1 1.6483 -4.1774 2.1570 35 1 -0.0049 -6.1376 -0.7021 36 1 -0.4176 -7.9062 -0.4381 37 1 -0.8069 -10.3195 -0.1774 38 1 3.4631 -8.7228 -2.0720 39 1 -1.1129 -4.2955 -1.1161 40 1 -0.3810 -3.0281 -2.1521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096060104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:36 Heat of formation + Delta-G solvation = -8.322673 kcal Electronic energy + Delta-G solvation = -26631.134995 eV Core-core repulsion = 22580.705988 eV Total energy + Delta-G solvation = -4050.429008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.32368 -40.54476 -39.28543 -38.05732 -36.89043 -34.19009 -32.44851 -31.53229 -31.02233 -29.27857 -29.07326 -27.60585 -24.73814 -23.90413 -23.31047 -21.54310 -20.83940 -19.60586 -18.90184 -18.40189 -17.15690 -17.10485 -16.86237 -16.24437 -16.16092 -15.57113 -15.13802 -14.85175 -14.46714 -14.24710 -14.04954 -13.88525 -13.76393 -13.34881 -12.82410 -12.40335 -12.37182 -12.16669 -11.89407 -11.78433 -11.55411 -11.37785 -11.09555 -10.97444 -10.93703 -10.86366 -10.28934 -10.14236 -10.01414 -9.84438 -9.50614 -9.47011 -9.31351 -9.18802 -8.98026 -8.62484 -6.96412 -5.76968 -3.14904 0.14591 0.61339 1.50852 2.47073 3.09424 3.37646 3.41048 3.43261 3.44540 3.64964 4.15718 4.38314 4.46166 4.50445 4.66808 5.02319 5.14337 5.31272 5.33635 5.39171 5.47987 5.53753 5.69958 5.73471 5.78772 5.88376 6.00932 6.03819 6.13432 6.21382 6.25624 6.46479 6.52446 6.56636 6.73732 6.88386 6.92876 7.20056 7.47756 7.59116 7.74798 8.11848 8.26320 9.06446 9.69004 10.48401 11.32734 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.030178 B = 0.002423 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.612171 B =11552.973052 C =12067.726457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.210 4.210 8 H 0.080 0.920 9 N -0.589 5.589 10 C 0.154 3.846 11 H 0.156 0.844 12 C -0.137 4.137 13 C -0.130 4.130 14 C 0.128 3.872 15 H 0.085 0.915 16 C 0.127 3.873 17 H 0.085 0.915 18 N -0.701 5.701 19 C 0.550 3.450 20 O -0.530 6.530 21 C -0.091 4.091 22 C -0.086 4.086 23 C -0.088 4.088 24 C -0.058 4.058 25 Cl -0.046 7.046 26 C 0.104 3.896 27 F -0.123 7.123 28 C -0.086 4.086 29 C -0.141 4.141 30 H 0.254 0.746 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.395 0.605 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.159 0.841 39 H 0.055 0.945 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.613 -21.569 -0.799 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.748 3.252 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.338 4.338 8 H 0.097 0.903 9 N -0.309 5.309 10 C 0.047 3.953 11 H 0.172 0.828 12 C -0.176 4.176 13 C -0.170 4.170 14 C 0.019 3.981 15 H 0.104 0.896 16 C 0.022 3.978 17 H 0.104 0.896 18 N -0.352 5.352 19 C 0.336 3.664 20 O -0.407 6.407 21 C -0.095 4.095 22 C -0.105 4.105 23 C -0.106 4.106 24 C -0.086 4.086 25 Cl -0.017 7.017 26 C 0.084 3.916 27 F -0.102 7.102 28 C -0.106 4.106 29 C -0.181 4.181 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.231 0.769 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.177 0.823 39 H 0.073 0.927 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.811 -21.067 -1.127 21.283 hybrid contribution 0.204 0.179 0.159 0.315 sum -2.607 -20.888 -0.967 21.072 Atomic orbital electron populations 1.69427 1.04998 1.25038 1.57733 1.24700 0.95662 0.97538 1.02812 0.86021 0.78516 0.83080 0.77587 1.21621 1.21672 1.20742 1.19068 0.90406 0.81823 1.42547 0.90265 1.46484 1.01558 0.98790 1.84113 1.23770 0.87779 0.95196 0.88565 0.82773 1.23226 0.94894 0.98201 1.01299 1.23077 0.97532 0.97411 0.98944 1.23208 0.96333 0.86203 0.92392 0.89646 1.22737 0.98430 0.76118 1.00550 0.89644 1.46176 1.18417 1.07493 1.63102 1.17994 0.84462 0.85007 0.78951 1.90810 1.25525 1.79829 1.44540 1.20071 0.94565 0.94310 1.00509 1.21401 0.96567 0.95363 0.97211 1.20927 0.98690 0.91788 0.99217 1.21237 0.95449 0.87075 1.04845 1.98403 1.96087 1.11346 1.95886 1.17232 0.86192 0.87087 1.01110 1.91568 1.62364 1.67095 1.89128 1.21253 1.01152 0.89486 0.98713 1.23311 0.93739 0.98465 1.02601 0.93529 0.92673 0.93563 0.93299 0.92774 0.76940 0.83745 0.83202 0.82302 0.92677 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.58 10.47 55.49 0.58 -25.00 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.92 21.68 29.55 -169.99 -5.02 16.65 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.21 -5.67 10.59 -15.06 -0.16 -5.83 16 8 H 0.08 2.11 7.83 -52.48 -0.41 1.69 16 9 N -0.59 -14.17 2.98 -145.81 -0.43 -14.60 16 10 C 0.15 3.29 4.72 -62.83 -0.30 2.99 16 11 H 0.16 3.82 5.52 -51.93 -0.29 3.53 16 12 C -0.14 -2.48 6.46 -23.68 -0.15 -2.63 16 13 C -0.13 -2.27 6.42 -23.65 -0.15 -2.42 16 14 C 0.13 2.56 5.30 -62.76 -0.33 2.23 16 15 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 16 C 0.13 2.22 3.08 -65.44 -0.20 2.02 16 17 H 0.09 1.69 7.71 -51.93 -0.40 1.29 16 18 N -0.70 -9.35 3.61 -52.35 -0.19 -9.54 16 19 C 0.55 7.77 7.77 -12.35 -0.10 7.68 16 20 O -0.53 -9.59 16.08 5.32 0.09 -9.51 16 21 C -0.09 -0.99 5.87 -104.97 -0.62 -1.60 16 22 C -0.09 -0.68 9.54 -39.19 -0.37 -1.05 16 23 C -0.09 -0.63 9.81 -39.61 -0.39 -1.02 16 24 C -0.06 -0.52 6.33 -39.32 -0.25 -0.77 16 25 Cl -0.05 -0.39 28.60 -51.86 -1.48 -1.88 16 26 C 0.10 1.07 7.26 -39.45 -0.29 0.78 16 27 F -0.12 -1.35 16.83 2.25 0.04 -1.31 16 28 C -0.09 -0.94 9.57 -39.12 -0.37 -1.31 16 29 C -0.14 -2.50 6.20 -24.26 -0.15 -2.65 16 30 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.69 7.82 -51.93 -0.41 0.28 16 33 H 0.05 0.71 6.56 -51.93 -0.34 0.37 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.39 4.05 6.08 -40.82 -0.25 3.80 16 36 H 0.14 0.79 6.40 -52.48 -0.34 0.46 16 37 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.16 1.77 7.65 -52.49 -0.40 1.37 16 39 H 0.05 0.79 7.34 -51.93 -0.38 0.41 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 345.68 15.07 5.21 5.21 Total: -1.00 -30.04 345.68 -9.60 -39.64 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.46 Total: 4.34 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -3.93 Total: -4.01 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.04 Total: -49.14 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.48 Total: -1.88 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.04 -9.60 -39.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096060104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.317 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds