Wall clock time and date at job start Tue Mar 31 2020 20:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 120.00268 * 2 1 4 4 H 1.48500 * 109.46872 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47077 * 119.99955 * 3 2 1 6 6 H 1.48492 * 109.46826 * 240.00228 * 3 2 1 7 7 C 1.38813 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00058 * 154.47822 * 7 2 1 9 9 N 1.36932 * 120.00089 * 334.48885 * 7 2 1 10 10 C 1.50237 * 130.83817 * 341.73045 * 9 7 2 11 11 H 1.09000 * 115.86188 * 359.60826 * 10 9 7 12 12 C 1.55845 * 101.05283 * 233.93117 * 10 9 7 13 13 C 1.54850 * 103.44442 * 327.06399 * 12 10 9 14 14 C 1.50246 * 130.83859 * 161.39132 * 9 7 2 15 15 H 1.08996 * 115.85500 * 0.39604 * 14 9 7 16 16 C 1.55844 * 101.04985 * 234.00369 * 14 9 7 17 17 H 1.09002 * 110.62482 * 85.55468 * 16 14 9 18 18 N 1.46506 * 110.62395 * 208.57559 * 16 14 9 19 19 C 1.34781 * 119.99575 * 273.58327 * 18 16 14 20 20 O 1.21576 * 120.00027 * 0.02562 * 19 18 16 21 21 C 1.47616 * 119.99728 * 179.97438 * 19 18 16 22 22 C 1.39889 * 120.17500 * 89.72655 * 21 19 18 23 23 F 1.35102 * 120.10478 * 359.97438 * 22 21 19 24 24 C 1.38245 * 119.79278 * 179.71853 * 22 21 19 25 25 C 1.38282 * 120.15237 * 0.55947 * 24 22 21 26 26 C 1.38350 * 120.36425 * 359.71688 * 25 24 22 27 27 C 1.38075 * 120.20341 * 0.02562 * 26 25 24 28 28 Cl 1.73594 * 120.08109 * 180.02562 * 27 26 25 29 29 C 1.54228 * 103.56361 * 327.14860 * 16 14 9 30 30 H 0.96993 * 119.99964 * 181.06396 * 1 2 3 31 31 H 1.09000 * 110.62237 * 85.54756 * 12 10 9 32 32 H 1.08999 * 110.63123 * 208.41132 * 12 10 9 33 33 H 1.09000 * 110.62728 * 118.48779 * 13 12 10 34 34 H 1.09002 * 110.62674 * 241.50886 * 13 12 10 35 35 H 0.96996 * 120.00300 * 93.59055 * 18 16 14 36 36 H 1.07993 * 119.92299 * 180.29774 * 24 22 21 37 37 H 1.08007 * 119.82091 * 179.74219 * 25 24 22 38 38 H 1.07995 * 119.90138 * 180.02562 * 26 25 24 39 39 H 1.08998 * 110.63974 * 241.43191 * 29 16 14 40 40 H 1.09001 * 110.49157 * 118.49510 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0112 -1.2480 -0.4024 9 7 1.4257 -2.3300 0.5118 10 6 0.2501 -2.4962 1.4323 11 1 -0.2278 -1.5746 1.7643 12 6 0.8745 -3.3735 2.5589 13 6 1.9044 -4.2495 1.8041 14 6 1.7585 -3.7825 0.3195 15 1 2.6092 -3.9935 -0.3285 16 6 0.3826 -4.3447 -0.1490 17 1 0.2655 -4.2248 -1.2261 18 7 0.2430 -5.7521 0.2333 19 6 0.7216 -6.7201 -0.5732 20 8 1.2697 -6.4253 -1.6176 21 6 0.5815 -8.1381 -0.1878 22 6 -0.5525 -8.8621 -0.5709 23 9 -1.5245 -8.2657 -1.2953 24 6 -0.6729 -10.1914 -0.2106 25 6 0.3184 -10.8012 0.5361 26 6 1.4399 -10.0896 0.9234 27 6 1.5780 -8.7628 0.5672 28 17 2.9868 -7.8731 1.0544 29 6 -0.6407 -3.4721 0.6059 30 1 -0.4850 -0.8398 0.0156 31 1 1.3722 -2.7488 3.3006 32 1 0.1118 -3.9934 3.0302 33 1 2.9128 -4.0592 2.1715 34 1 1.6530 -5.3058 1.8990 35 1 -0.1940 -5.9872 1.0667 36 1 -1.5452 -10.7536 -0.5094 37 1 0.2169 -11.8388 0.8182 38 1 2.2098 -10.5734 1.5061 39 1 -1.2546 -4.0844 1.2665 40 1 -1.2643 -2.9203 -0.0975 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096407733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:40 Heat of formation + Delta-G solvation = -10.118121 kcal Electronic energy + Delta-G solvation = -27502.332550 eV Core-core repulsion = 23451.825686 eV Total energy + Delta-G solvation = -4050.506864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.30743 -40.42269 -39.40439 -38.09129 -36.78482 -34.09912 -32.57894 -31.67396 -30.93453 -29.37985 -29.03801 -27.61866 -24.61313 -23.75411 -23.22365 -21.60192 -20.87894 -19.69606 -18.82596 -18.36693 -17.71762 -17.32622 -17.11538 -16.24583 -15.75726 -15.46377 -15.13285 -15.04709 -14.55343 -14.09655 -13.98446 -13.67158 -13.62562 -13.53072 -12.92203 -12.62651 -12.38399 -12.05085 -11.91446 -11.74546 -11.71223 -11.38305 -11.23641 -11.05554 -10.74992 -10.56110 -10.26116 -10.09859 -9.99711 -9.83762 -9.57024 -9.41462 -9.38185 -9.18154 -8.71057 -8.44927 -6.96584 -6.17331 -3.13069 0.39914 0.53452 1.66064 2.55699 2.86105 3.20471 3.50451 3.53743 3.71466 3.73412 4.23834 4.44410 4.49959 4.57676 4.66354 4.91892 5.02119 5.29860 5.31172 5.38913 5.46062 5.51533 5.61281 5.67388 5.72904 5.78525 5.90112 5.96330 6.09276 6.14085 6.16542 6.35414 6.46251 6.52836 6.66750 6.72499 6.81602 7.02290 7.13260 7.58628 7.63734 8.27186 8.42184 8.94709 9.77820 10.46645 11.25087 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.021256 B = 0.003388 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.961898 B = 8261.991349 C = 8811.241944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.028 4.028 3 Si 1.074 2.926 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.323 4.323 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.143 3.857 11 H 0.106 0.894 12 C -0.133 4.133 13 C -0.127 4.127 14 C 0.131 3.869 15 H 0.088 0.912 16 C 0.128 3.872 17 H 0.086 0.914 18 N -0.697 5.697 19 C 0.559 3.441 20 O -0.517 6.517 21 C -0.150 4.150 22 C 0.144 3.856 23 F -0.122 7.122 24 C -0.152 4.152 25 C -0.066 4.066 26 C -0.123 4.123 27 C 0.017 3.983 28 Cl -0.033 7.033 29 C -0.136 4.136 30 H 0.270 0.730 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.396 0.604 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.060 0.940 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.580 -23.435 5.826 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.230 4.230 3 Si 0.903 3.097 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.450 4.450 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.035 3.965 11 H 0.124 0.876 12 C -0.172 4.172 13 C -0.167 4.167 14 C 0.023 3.977 15 H 0.106 0.894 16 C 0.022 3.978 17 H 0.104 0.896 18 N -0.347 5.347 19 C 0.342 3.658 20 O -0.392 6.392 21 C -0.155 4.155 22 C 0.123 3.877 23 F -0.100 7.100 24 C -0.171 4.171 25 C -0.084 4.084 26 C -0.142 4.142 27 C -0.010 4.010 28 Cl -0.003 7.003 29 C -0.176 4.176 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.230 0.770 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.078 0.922 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.149 -21.188 4.956 21.790 hybrid contribution -0.101 -1.768 0.231 1.786 sum -1.250 -22.955 5.187 23.567 Atomic orbital electron populations 1.70807 1.06389 1.30349 1.48761 1.25831 0.96620 1.01059 0.99444 0.83363 0.74600 0.75533 0.76159 1.21070 1.22134 1.22006 1.19729 0.98018 0.86481 1.40795 0.91573 1.46569 1.34657 0.99525 1.50614 1.22964 0.88897 0.95183 0.89407 0.87573 1.22951 0.97955 0.98182 0.98143 1.22975 0.98692 0.97640 0.97387 1.23310 0.94402 0.85898 0.94117 0.89423 1.22597 0.98486 0.76826 0.99855 0.89610 1.46227 1.58527 1.06774 1.23188 1.17746 0.79580 0.84034 0.84449 1.90847 1.42026 1.82678 1.23675 1.20011 0.95343 0.96737 1.03375 1.17499 0.85336 0.91224 0.93609 1.91589 1.60099 1.83801 1.74509 1.21220 1.01861 0.92777 1.01254 1.21100 0.91870 1.00377 0.95092 1.21113 0.99578 0.91835 1.01694 1.20761 0.89733 0.93021 0.97533 1.98451 1.37557 1.74776 1.89564 1.23118 0.97064 0.97957 0.99503 0.91883 0.92493 0.93136 0.92857 0.92601 0.76973 0.83464 0.83549 0.83596 0.92190 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.51 12.88 55.49 0.71 -26.79 16 2 C -0.03 -0.81 5.29 -17.43 -0.09 -0.90 16 3 Si 1.07 25.63 29.99 -169.99 -5.10 20.53 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.32 -9.17 10.39 -15.06 -0.16 -9.33 16 8 H 0.07 1.90 7.95 -52.49 -0.42 1.48 16 9 N -0.59 -14.86 2.82 -145.54 -0.41 -15.27 16 10 C 0.14 3.12 3.80 -62.80 -0.24 2.88 16 11 H 0.11 2.58 6.76 -51.93 -0.35 2.23 16 12 C -0.13 -2.42 6.44 -24.24 -0.16 -2.58 16 13 C -0.13 -2.31 6.35 -23.98 -0.15 -2.46 16 14 C 0.13 2.81 5.37 -62.54 -0.34 2.48 16 15 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 16 C 0.13 2.47 3.05 -65.77 -0.20 2.27 16 17 H 0.09 1.91 7.69 -51.93 -0.40 1.51 16 18 N -0.70 -10.95 3.65 -52.73 -0.19 -11.14 16 19 C 0.56 9.30 5.95 -12.43 -0.07 9.22 16 20 O -0.52 -10.78 16.83 5.30 0.09 -10.69 16 21 C -0.15 -1.95 5.64 -104.88 -0.59 -2.55 16 22 C 0.14 1.64 7.29 -38.96 -0.28 1.35 16 23 F -0.12 -1.60 16.83 2.25 0.04 -1.57 16 24 C -0.15 -1.16 10.01 -39.56 -0.40 -1.55 16 25 C -0.07 -0.39 10.03 -39.52 -0.40 -0.79 16 26 C -0.12 -0.93 9.81 -39.60 -0.39 -1.32 16 27 C 0.02 0.19 6.35 -39.07 -0.25 -0.06 16 28 Cl -0.03 -0.40 28.04 -51.86 -1.45 -1.86 16 29 C -0.14 -2.59 6.03 -24.57 -0.15 -2.74 16 30 H 0.27 7.88 5.58 -40.82 -0.23 7.65 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.77 7.82 -51.93 -0.41 0.36 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.87 6.49 -51.93 -0.34 0.54 16 35 H 0.40 5.18 7.99 -40.82 -0.33 4.86 16 36 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.15 0.37 8.06 -52.48 -0.42 -0.05 16 38 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.06 0.94 7.34 -51.93 -0.38 0.55 16 40 H 0.07 1.48 7.66 -51.93 -0.40 1.09 16 LS Contribution 348.04 15.07 5.24 5.24 Total: -1.00 -33.60 348.04 -9.50 -43.10 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.58 Total: 4.50 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -3.86 Total: -6.06 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.11 Total: -53.20 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.10 Total: 20.53 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.45 Total: -1.86 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.60 -9.50 -43.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096407733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.983 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds