Wall clock time and date at job start Tue Mar 31 2020 20:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 120.00268 * 2 1 4 4 H 1.48500 * 109.46872 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47077 * 119.99955 * 3 2 1 6 6 H 1.48492 * 109.46826 * 240.00228 * 3 2 1 7 7 C 1.38813 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00058 * 154.47822 * 7 2 1 9 9 N 1.36932 * 120.00089 * 334.48885 * 7 2 1 10 10 C 1.50237 * 130.83817 * 341.73045 * 9 7 2 11 11 H 1.09000 * 115.86188 * 359.60826 * 10 9 7 12 12 C 1.55845 * 101.05283 * 233.93117 * 10 9 7 13 13 C 1.54850 * 103.44442 * 327.06399 * 12 10 9 14 14 C 1.50246 * 130.83859 * 161.39132 * 9 7 2 15 15 H 1.08996 * 115.85500 * 0.39604 * 14 9 7 16 16 C 1.55844 * 101.04985 * 234.00369 * 14 9 7 17 17 H 1.09002 * 110.62482 * 85.55468 * 16 14 9 18 18 N 1.46506 * 110.62395 * 208.57559 * 16 14 9 19 19 C 1.34781 * 119.99575 * 273.58327 * 18 16 14 20 20 O 1.21576 * 120.00027 * 0.02562 * 19 18 16 21 21 C 1.47616 * 119.99728 * 179.97438 * 19 18 16 22 22 C 1.39889 * 120.17500 * 89.72655 * 21 19 18 23 23 F 1.35102 * 120.10478 * 359.97438 * 22 21 19 24 24 C 1.38245 * 119.79278 * 179.71853 * 22 21 19 25 25 C 1.38282 * 120.15237 * 0.55947 * 24 22 21 26 26 C 1.38350 * 120.36425 * 359.71688 * 25 24 22 27 27 C 1.38075 * 120.20341 * 0.02562 * 26 25 24 28 28 Cl 1.73594 * 120.08109 * 180.02562 * 27 26 25 29 29 C 1.54228 * 103.56361 * 327.14860 * 16 14 9 30 30 H 0.96993 * 119.99964 * 181.06396 * 1 2 3 31 31 H 1.09000 * 110.62237 * 85.54756 * 12 10 9 32 32 H 1.08999 * 110.63123 * 208.41132 * 12 10 9 33 33 H 1.09000 * 110.62728 * 118.48779 * 13 12 10 34 34 H 1.09002 * 110.62674 * 241.50886 * 13 12 10 35 35 H 0.96996 * 120.00300 * 93.59055 * 18 16 14 36 36 H 1.07993 * 119.92299 * 180.29774 * 24 22 21 37 37 H 1.08007 * 119.82091 * 179.74219 * 25 24 22 38 38 H 1.07995 * 119.90138 * 180.02562 * 26 25 24 39 39 H 1.08998 * 110.63974 * 241.43191 * 29 16 14 40 40 H 1.09001 * 110.49157 * 118.49510 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0112 -1.2480 -0.4024 9 7 1.4257 -2.3300 0.5118 10 6 0.2501 -2.4962 1.4323 11 1 -0.2278 -1.5746 1.7643 12 6 0.8745 -3.3735 2.5589 13 6 1.9044 -4.2495 1.8041 14 6 1.7585 -3.7825 0.3195 15 1 2.6092 -3.9935 -0.3285 16 6 0.3826 -4.3447 -0.1490 17 1 0.2655 -4.2248 -1.2261 18 7 0.2430 -5.7521 0.2333 19 6 0.7216 -6.7201 -0.5732 20 8 1.2697 -6.4253 -1.6176 21 6 0.5815 -8.1381 -0.1878 22 6 -0.5525 -8.8621 -0.5709 23 9 -1.5245 -8.2657 -1.2953 24 6 -0.6729 -10.1914 -0.2106 25 6 0.3184 -10.8012 0.5361 26 6 1.4399 -10.0896 0.9234 27 6 1.5780 -8.7628 0.5672 28 17 2.9868 -7.8731 1.0544 29 6 -0.6407 -3.4721 0.6059 30 1 -0.4850 -0.8398 0.0156 31 1 1.3722 -2.7488 3.3006 32 1 0.1118 -3.9934 3.0302 33 1 2.9128 -4.0592 2.1715 34 1 1.6530 -5.3058 1.8990 35 1 -0.1940 -5.9872 1.0667 36 1 -1.5452 -10.7536 -0.5094 37 1 0.2169 -11.8388 0.8182 38 1 2.2098 -10.5734 1.5061 39 1 -1.2546 -4.0844 1.2665 40 1 -1.2643 -2.9203 -0.0975 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096407733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:40 Heat of formation + Delta-G solvation = -30.823772 kcal Electronic energy + Delta-G solvation = -27503.230415 eV Core-core repulsion = 23451.825686 eV Total energy + Delta-G solvation = -4051.404729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.19144 -41.83156 -40.57609 -39.30962 -37.61553 -35.75014 -34.47578 -32.58547 -31.61445 -30.94259 -30.90635 -29.27162 -26.16316 -25.16036 -23.93915 -23.08387 -22.22070 -21.45836 -20.39490 -19.69740 -19.24432 -18.43612 -17.95784 -17.47701 -16.88223 -16.75802 -16.31027 -16.27279 -15.88845 -15.60707 -15.39806 -15.18379 -14.85183 -14.56431 -14.38232 -14.05277 -13.59422 -13.49022 -13.22169 -12.99348 -12.75469 -12.64129 -12.61452 -12.50787 -12.43677 -12.20648 -11.94870 -11.89492 -11.67755 -11.47719 -11.24042 -11.08480 -10.59537 -10.21468 -10.18013 -9.89007 -8.99555 -8.42340 -5.32414 -0.33513 -0.13953 0.85448 1.27242 1.54770 1.62942 1.81916 1.90527 2.26737 2.59836 2.97517 3.16352 3.26004 3.43436 3.69271 3.74168 3.77630 3.88661 3.93915 4.10049 4.19214 4.24422 4.28337 4.38946 4.50046 4.57447 4.62217 4.77614 4.84276 4.85353 4.93252 4.97561 5.00034 5.10807 5.15333 5.24853 5.39951 5.49448 5.56396 5.60065 6.26307 6.31561 6.79638 6.99467 7.63114 8.39701 9.02817 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.021256 B = 0.003388 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.961898 B = 8261.991349 C = 8811.241944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.077 4.077 3 Si 1.122 2.878 4 H -0.288 1.288 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.335 4.335 8 H 0.050 0.950 9 N -0.622 5.622 10 C 0.134 3.866 11 H 0.077 0.923 12 C -0.120 4.120 13 C -0.110 4.110 14 C 0.122 3.878 15 H 0.059 0.941 16 C 0.145 3.855 17 H 0.046 0.954 18 N -0.684 5.684 19 C 0.561 3.439 20 O -0.570 6.570 21 C -0.176 4.176 22 C 0.121 3.879 23 F -0.141 7.141 24 C -0.137 4.137 25 C -0.041 4.041 26 C -0.111 4.111 27 C 0.004 3.996 28 Cl -0.055 7.055 29 C -0.123 4.123 30 H 0.262 0.738 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.414 0.586 36 H 0.178 0.822 37 H 0.197 0.803 38 H 0.176 0.824 39 H 0.105 0.895 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.172 -27.329 8.185 28.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.273 4.273 3 Si 0.946 3.054 4 H -0.213 1.213 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.464 4.464 8 H 0.068 0.932 9 N -0.346 5.346 10 C 0.027 3.973 11 H 0.095 0.905 12 C -0.159 4.159 13 C -0.149 4.149 14 C 0.014 3.986 15 H 0.077 0.923 16 C 0.038 3.962 17 H 0.064 0.936 18 N -0.335 5.335 19 C 0.347 3.653 20 O -0.449 6.449 21 C -0.181 4.181 22 C 0.101 3.899 23 F -0.119 7.119 24 C -0.156 4.156 25 C -0.059 4.059 26 C -0.129 4.129 27 C -0.023 4.023 28 Cl -0.026 7.026 29 C -0.162 4.162 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.251 0.749 36 H 0.196 0.804 37 H 0.214 0.786 38 H 0.193 0.807 39 H 0.123 0.877 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.756 -25.146 7.359 26.259 hybrid contribution 0.077 -0.756 -0.539 0.932 sum -1.679 -25.902 6.820 26.837 Atomic orbital electron populations 1.70892 1.07137 1.29968 1.51087 1.27149 0.96775 1.04124 0.99228 0.82736 0.73713 0.71832 0.77085 1.21338 1.20566 1.20723 1.19905 0.97624 0.88285 1.40566 0.93199 1.46801 1.35816 1.00086 1.51867 1.23036 0.88336 0.95264 0.90621 0.90456 1.22889 0.98548 0.97796 0.96625 1.22838 0.98686 0.99149 0.94240 1.23366 0.94415 0.84651 0.96138 0.92284 1.22020 0.97407 0.79109 0.97626 0.93585 1.45960 1.58518 1.05078 1.23922 1.18360 0.77839 0.85762 0.83356 1.90813 1.44207 1.83942 1.25961 1.19726 0.97601 0.94378 1.06421 1.17864 0.84790 0.92714 0.94580 1.91540 1.60752 1.84422 1.75231 1.21647 1.03158 0.90869 0.99906 1.21700 0.89776 1.02088 0.92307 1.21552 1.00702 0.90064 1.00618 1.20930 0.88685 0.94280 0.98426 1.98442 1.38703 1.75635 1.89779 1.22984 0.96540 0.97489 0.99213 0.92767 0.93008 0.88660 0.93416 0.89678 0.74864 0.80439 0.78620 0.80675 0.87666 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.76 12.88 21.65 0.28 -58.48 16 2 C -0.08 -4.54 5.29 84.86 0.45 -4.09 16 3 Si 1.12 53.14 29.99 68.60 2.06 55.20 16 4 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.34 -19.99 10.39 84.03 0.87 -19.11 16 8 H 0.05 3.04 7.95 -2.91 -0.02 3.01 16 9 N -0.62 -32.64 2.82 -614.37 -1.73 -34.37 16 10 C 0.13 5.93 3.80 46.23 0.18 6.10 16 11 H 0.08 3.89 6.76 -2.39 -0.02 3.88 16 12 C -0.12 -4.16 6.44 32.21 0.21 -3.95 16 13 C -0.11 -3.90 6.35 32.38 0.21 -3.69 16 14 C 0.12 5.46 5.37 46.39 0.25 5.71 16 15 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 16 C 0.15 5.84 3.05 46.39 0.14 5.98 16 17 H 0.05 2.22 7.69 -2.39 -0.02 2.20 16 18 N -0.68 -21.37 3.65 -438.99 -1.60 -22.98 16 19 C 0.56 19.03 5.95 86.72 0.52 19.55 16 20 O -0.57 -25.19 16.83 -3.96 -0.07 -25.25 16 21 C -0.18 -4.41 5.64 -20.03 -0.11 -4.53 16 22 C 0.12 2.51 7.29 22.67 0.17 2.68 16 23 F -0.14 -3.64 16.83 44.97 0.76 -2.88 16 24 C -0.14 -1.46 10.01 22.28 0.22 -1.24 16 25 C -0.04 -0.24 10.03 22.31 0.22 -0.02 16 26 C -0.11 -1.15 9.81 22.26 0.22 -0.94 16 27 C 0.00 0.09 6.35 22.60 0.14 0.23 16 28 Cl -0.05 -1.28 28.04 -2.72 -0.08 -1.36 16 29 C -0.12 -4.69 6.03 31.99 0.19 -4.50 16 30 H 0.26 16.07 5.58 -92.71 -0.52 15.55 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.10 2.49 7.82 -2.39 -0.02 2.47 16 33 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 2.50 6.49 -2.39 -0.02 2.48 16 35 H 0.41 9.97 7.99 -92.71 -0.74 9.23 16 36 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 37 H 0.20 -0.64 8.06 -2.91 -0.02 -0.66 16 38 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 39 H 0.11 3.03 7.34 -2.39 -0.02 3.01 16 40 H 0.05 2.06 7.66 -2.39 -0.02 2.04 16 Total: -1.00 -81.30 348.04 4.10 -77.20 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.61 Total: 14.73 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 3.87 Total: -1.81 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -3.05 Total: -115.83 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.07 Total: -25.25 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.76 Total: -2.88 kcal Atomic # 14 Polarization: 53.14 SS G_CDS: 2.06 Total: 55.20 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -81.30 4.10 -77.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096407733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.381 kcal (2) G-P(sol) polarization free energy of solvation -81.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds