Wall clock time and date at job start Tue Mar 31 2020 20:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99651 * 2 1 4 4 H 1.48499 * 109.47084 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47174 * 299.99727 * 3 2 1 6 6 H 1.48493 * 109.47247 * 59.99945 * 3 2 1 7 7 C 1.38817 * 120.00541 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00117 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99297 * 0.02562 * 7 2 1 10 10 C 1.50240 * 130.84673 * 0.02562 * 9 7 2 11 11 H 1.08997 * 115.85365 * 0.34530 * 10 9 7 12 12 C 1.55838 * 101.05207 * 234.66828 * 10 9 7 13 13 C 1.55868 * 102.97610 * 326.18281 * 12 10 9 14 14 C 1.50246 * 130.83155 * 180.02562 * 9 7 2 15 15 H 1.08998 * 115.86020 * 0.37151 * 14 9 7 16 16 C 1.55850 * 101.04778 * 234.69352 * 14 9 7 17 17 H 1.08997 * 110.62258 * 85.55472 * 16 14 9 18 18 N 1.46499 * 110.62699 * 208.57330 * 16 14 9 19 19 C 1.34778 * 119.99921 * 274.01984 * 18 16 14 20 20 O 1.21580 * 119.99961 * 359.97438 * 19 18 16 21 21 C 1.47647 * 119.99843 * 180.02562 * 19 18 16 22 22 C 1.39694 * 120.12889 * 359.71452 * 21 19 18 23 23 C 1.37780 * 119.89159 * 179.78744 * 22 21 19 24 24 C 1.38719 * 120.15446 * 0.49804 * 23 22 21 25 25 F 1.35098 * 119.86767 * 179.76068 * 24 23 22 26 26 C 1.38567 * 120.26161 * 359.73657 * 24 23 22 27 27 C 1.38028 * 120.10727 * 0.02562 * 26 24 23 28 28 Cl 1.73593 * 120.07962 * 179.97438 * 27 26 24 29 29 C 1.55840 * 101.04759 * 126.01493 * 10 9 7 30 30 H 0.97005 * 120.00668 * 359.97438 * 1 2 3 31 31 H 1.08998 * 110.62880 * 85.55391 * 12 10 9 32 32 H 1.08999 * 110.62692 * 208.56984 * 12 10 9 33 33 H 1.08994 * 111.10374 * 242.11586 * 13 12 10 34 34 H 1.08995 * 110.07231 * 119.15123 * 13 12 10 35 35 H 0.96993 * 120.00088 * 94.01797 * 18 16 14 36 36 H 1.07998 * 120.05765 * 0.02562 * 22 21 19 37 37 H 1.07998 * 119.92881 * 180.23262 * 23 22 21 38 38 H 1.07996 * 119.94451 * 180.02562 * 26 24 23 39 39 H 1.09003 * 110.62178 * 151.43168 * 29 10 9 40 40 H 1.08998 * 110.63008 * 274.44846 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7100 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1499 -2.6707 -0.0005 11 1 -0.8013 -1.7968 -0.0073 12 6 -0.2779 -3.5950 1.2476 13 6 1.0661 -4.3844 1.2377 14 6 1.8189 -3.8071 0.0016 15 1 2.9014 -3.9342 0.0088 16 6 1.0829 -4.3801 -1.2470 17 1 1.6523 -4.1785 -2.1543 18 7 0.8472 -5.8177 -1.0926 19 6 1.8014 -6.6994 -1.4513 20 8 2.8576 -6.3016 -1.9035 21 6 1.5636 -8.1483 -1.2963 22 6 0.3530 -8.6081 -0.7725 23 6 0.1346 -9.9614 -0.6340 24 6 1.1178 -10.8673 -1.0037 25 9 0.8994 -12.1929 -0.8609 26 6 2.3230 -10.4181 -1.5194 27 6 2.5514 -9.0650 -1.6674 28 17 4.0617 -8.5030 -2.3129 29 6 -0.2731 -3.6107 -1.2373 30 1 -0.4851 0.8400 0.0004 31 1 -0.3881 -3.0017 2.1553 32 1 -1.1165 -4.2818 1.1325 33 1 0.8923 -5.4536 1.1167 34 1 1.6231 -4.1861 2.1534 35 1 0.0045 -6.1350 -0.7323 36 1 -0.4121 -7.9041 -0.4802 37 1 -0.8026 -10.3176 -0.2327 38 1 3.0848 -11.1280 -1.8060 39 1 -1.1121 -4.2959 -1.1167 40 1 -0.3798 -3.0288 -2.1528 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096475378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:33 Heat of formation + Delta-G solvation = 0.018338 kcal Electronic energy + Delta-G solvation = -26895.891176 eV Core-core repulsion = 22845.823861 eV Total energy + Delta-G solvation = -4050.067314 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.41425 -40.45418 -39.20554 -37.82123 -36.57834 -34.06802 -32.43054 -31.47146 -31.04276 -29.22188 -28.99184 -27.52867 -24.52190 -23.84573 -23.36704 -21.50838 -20.78187 -19.53947 -18.81159 -18.33387 -17.69768 -17.08096 -16.71592 -16.12595 -15.56435 -15.32181 -15.10116 -14.83373 -14.63132 -14.27707 -13.95455 -13.89437 -13.82689 -13.13224 -13.09542 -12.33823 -12.25906 -11.83154 -11.75361 -11.60243 -11.53795 -11.20904 -11.06821 -10.93432 -10.90973 -10.85946 -10.23161 -10.07055 -9.82568 -9.52656 -9.46856 -9.43022 -9.25566 -9.11544 -8.95975 -8.52808 -6.92849 -5.74174 -3.11954 0.24629 0.59858 1.84856 2.56647 3.24920 3.38988 3.45196 3.47072 3.47170 3.71292 4.16514 4.40969 4.42687 4.54175 4.71931 4.97090 5.17473 5.28033 5.37555 5.41151 5.49524 5.59022 5.63041 5.77907 5.83568 5.90436 6.04203 6.08819 6.17258 6.26731 6.30416 6.50776 6.56457 6.62698 6.77884 6.93747 6.97148 7.24230 7.51342 7.67651 7.78792 8.15077 8.38764 9.09253 9.71851 10.51687 11.35461 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.002904 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.652339 B = 9637.900117 C =10493.399323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.916 3.084 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.208 4.208 8 H 0.080 0.920 9 N -0.590 5.590 10 C 0.152 3.848 11 H 0.154 0.846 12 C -0.136 4.136 13 C -0.130 4.130 14 C 0.128 3.872 15 H 0.085 0.915 16 C 0.130 3.870 17 H 0.086 0.914 18 N -0.705 5.705 19 C 0.546 3.454 20 O -0.513 6.513 21 C -0.132 4.132 22 C -0.047 4.047 23 C -0.157 4.157 24 C 0.132 3.868 25 F -0.130 7.130 26 C -0.159 4.159 27 C 0.038 3.962 28 Cl -0.014 7.014 29 C -0.139 4.139 30 H 0.253 0.747 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.392 0.608 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.055 0.945 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.268 -21.556 -1.498 21.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.336 4.336 8 H 0.098 0.902 9 N -0.311 5.311 10 C 0.046 3.954 11 H 0.171 0.829 12 C -0.175 4.175 13 C -0.170 4.170 14 C 0.019 3.981 15 H 0.103 0.897 16 C 0.024 3.976 17 H 0.105 0.895 18 N -0.357 5.357 19 C 0.331 3.669 20 O -0.390 6.390 21 C -0.136 4.136 22 C -0.066 4.066 23 C -0.176 4.176 24 C 0.112 3.888 25 F -0.108 7.108 26 C -0.178 4.178 27 C 0.010 3.990 28 Cl 0.016 6.984 29 C -0.179 4.179 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.228 0.772 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.073 0.927 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.317 -20.865 -1.888 20.992 hybrid contribution 0.094 0.262 0.215 0.352 sum -1.222 -20.603 -1.673 20.707 Atomic orbital electron populations 1.69436 1.04987 1.24864 1.57919 1.24690 0.95647 0.97498 1.02926 0.85963 0.78714 0.83450 0.77190 1.20531 1.21782 1.21831 1.19115 0.90418 0.81837 1.42274 0.90242 1.46497 1.01558 0.98833 1.84170 1.23750 0.87777 0.95309 0.88587 0.82918 1.23203 0.94989 0.98011 1.01297 1.23070 0.97651 0.97354 0.98909 1.23187 0.96332 0.86114 0.92424 0.89681 1.22918 0.98148 0.76115 1.00412 0.89549 1.46184 1.17826 1.07418 1.64250 1.17915 0.84762 0.84885 0.79306 1.90888 1.24570 1.79585 1.43907 1.20067 0.94703 0.94719 1.04157 1.21191 0.95500 0.95259 0.94611 1.21172 1.00077 0.92781 1.03598 1.17670 0.94295 0.77835 0.99024 1.91546 1.94927 1.31121 1.93237 1.20973 0.97899 0.94843 1.04126 1.20736 0.89527 0.92096 0.96663 1.98450 1.27477 1.89243 1.83256 1.23471 0.93650 0.98432 1.02370 0.93625 0.92454 0.93799 0.93129 0.93092 0.77222 0.83567 0.83443 0.83135 0.92697 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.81 10.46 55.49 0.58 -25.22 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.21 -5.68 10.59 -15.06 -0.16 -5.84 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.59 -14.38 2.97 -145.83 -0.43 -14.81 16 10 C 0.15 3.31 4.67 -62.81 -0.29 3.02 16 11 H 0.15 3.83 5.52 -51.93 -0.29 3.54 16 12 C -0.14 -2.51 6.53 -23.68 -0.15 -2.66 16 13 C -0.13 -2.32 6.36 -23.69 -0.15 -2.47 16 14 C 0.13 2.62 5.29 -62.80 -0.33 2.29 16 15 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 16 C 0.13 2.31 3.17 -64.86 -0.21 2.11 16 17 H 0.09 1.74 7.70 -51.93 -0.40 1.34 16 18 N -0.71 -9.75 3.61 -51.85 -0.19 -9.93 16 19 C 0.55 8.02 7.76 -12.42 -0.10 7.92 16 20 O -0.51 -9.35 13.69 5.30 0.07 -9.27 16 21 C -0.13 -1.53 5.88 -104.94 -0.62 -2.15 16 22 C -0.05 -0.39 9.53 -39.21 -0.37 -0.76 16 23 C -0.16 -1.16 10.01 -39.57 -0.40 -1.56 16 24 C 0.13 1.13 7.31 -39.28 -0.29 0.84 16 25 F -0.13 -1.14 17.26 2.25 0.04 -1.10 16 26 C -0.16 -1.46 9.79 -39.54 -0.39 -1.85 16 27 C 0.04 0.44 6.35 -39.08 -0.25 0.19 16 28 Cl -0.01 -0.18 26.02 -51.86 -1.35 -1.53 16 29 C -0.14 -2.51 6.22 -23.66 -0.15 -2.66 16 30 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.04 0.67 7.85 -51.93 -0.41 0.26 16 33 H 0.05 0.76 6.55 -51.93 -0.34 0.42 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.39 4.24 6.05 -40.82 -0.25 3.99 16 36 H 0.15 0.87 6.40 -52.49 -0.34 0.53 16 37 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.05 0.81 7.38 -51.93 -0.38 0.42 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -30.38 342.14 -9.57 -39.95 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -4.48 Total: 3.93 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -3.94 Total: -4.01 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.04 Total: -49.97 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.07 Total: -9.27 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.35 Total: -1.53 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.38 -9.57 -39.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096475378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.972 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds