Wall clock time and date at job start Tue Mar 31 2020 20:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99651 * 2 1 4 4 H 1.48499 * 109.47084 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47174 * 299.99727 * 3 2 1 6 6 H 1.48493 * 109.47247 * 59.99945 * 3 2 1 7 7 C 1.38817 * 120.00541 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00117 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99297 * 0.02562 * 7 2 1 10 10 C 1.50240 * 130.84673 * 0.02562 * 9 7 2 11 11 H 1.08997 * 115.85365 * 0.34530 * 10 9 7 12 12 C 1.55838 * 101.05207 * 234.66828 * 10 9 7 13 13 C 1.55868 * 102.97610 * 326.18281 * 12 10 9 14 14 C 1.50246 * 130.83155 * 180.02562 * 9 7 2 15 15 H 1.08998 * 115.86020 * 0.37151 * 14 9 7 16 16 C 1.55850 * 101.04778 * 234.69352 * 14 9 7 17 17 H 1.08997 * 110.62258 * 85.55472 * 16 14 9 18 18 N 1.46499 * 110.62699 * 208.57330 * 16 14 9 19 19 C 1.34778 * 119.99921 * 274.01984 * 18 16 14 20 20 O 1.21580 * 119.99961 * 359.97438 * 19 18 16 21 21 C 1.47647 * 119.99843 * 180.02562 * 19 18 16 22 22 C 1.39694 * 120.12889 * 359.71452 * 21 19 18 23 23 C 1.37780 * 119.89159 * 179.78744 * 22 21 19 24 24 C 1.38719 * 120.15446 * 0.49804 * 23 22 21 25 25 F 1.35098 * 119.86767 * 179.76068 * 24 23 22 26 26 C 1.38567 * 120.26161 * 359.73657 * 24 23 22 27 27 C 1.38028 * 120.10727 * 0.02562 * 26 24 23 28 28 Cl 1.73593 * 120.07962 * 179.97438 * 27 26 24 29 29 C 1.55840 * 101.04759 * 126.01493 * 10 9 7 30 30 H 0.97005 * 120.00668 * 359.97438 * 1 2 3 31 31 H 1.08998 * 110.62880 * 85.55391 * 12 10 9 32 32 H 1.08999 * 110.62692 * 208.56984 * 12 10 9 33 33 H 1.08994 * 111.10374 * 242.11586 * 13 12 10 34 34 H 1.08995 * 110.07231 * 119.15123 * 13 12 10 35 35 H 0.96993 * 120.00088 * 94.01797 * 18 16 14 36 36 H 1.07998 * 120.05765 * 0.02562 * 22 21 19 37 37 H 1.07998 * 119.92881 * 180.23262 * 23 22 21 38 38 H 1.07996 * 119.94451 * 180.02562 * 26 24 23 39 39 H 1.09003 * 110.62178 * 151.43168 * 29 10 9 40 40 H 1.08998 * 110.63008 * 274.44846 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7100 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1499 -2.6707 -0.0005 11 1 -0.8013 -1.7968 -0.0073 12 6 -0.2779 -3.5950 1.2476 13 6 1.0661 -4.3844 1.2377 14 6 1.8189 -3.8071 0.0016 15 1 2.9014 -3.9342 0.0088 16 6 1.0829 -4.3801 -1.2470 17 1 1.6523 -4.1785 -2.1543 18 7 0.8472 -5.8177 -1.0926 19 6 1.8014 -6.6994 -1.4513 20 8 2.8576 -6.3016 -1.9035 21 6 1.5636 -8.1483 -1.2963 22 6 0.3530 -8.6081 -0.7725 23 6 0.1346 -9.9614 -0.6340 24 6 1.1178 -10.8673 -1.0037 25 9 0.8994 -12.1929 -0.8609 26 6 2.3230 -10.4181 -1.5194 27 6 2.5514 -9.0650 -1.6674 28 17 4.0617 -8.5030 -2.3129 29 6 -0.2731 -3.6107 -1.2373 30 1 -0.4851 0.8400 0.0004 31 1 -0.3881 -3.0017 2.1553 32 1 -1.1165 -4.2818 1.1325 33 1 0.8923 -5.4536 1.1167 34 1 1.6231 -4.1861 2.1534 35 1 0.0045 -6.1350 -0.7323 36 1 -0.4121 -7.9041 -0.4802 37 1 -0.8026 -10.3176 -0.2327 38 1 3.0848 -11.1280 -1.8060 39 1 -1.1121 -4.2959 -1.1167 40 1 -0.3798 -3.0288 -2.1528 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096475378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:32 Heat of formation + Delta-G solvation = -16.810164 kcal Electronic energy + Delta-G solvation = -26896.620914 eV Core-core repulsion = 22845.823861 eV Total energy + Delta-G solvation = -4050.797053 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.08086 -41.62240 -40.41324 -38.95949 -37.45253 -35.49009 -34.24738 -32.29652 -31.84311 -30.94848 -30.52819 -29.04822 -26.20737 -24.89663 -24.13748 -22.85799 -22.00973 -21.18111 -20.19063 -19.37411 -18.83779 -18.44412 -17.69178 -16.89762 -16.80825 -16.65728 -16.40751 -16.07671 -15.88614 -15.56163 -15.39222 -14.79932 -14.59524 -14.19602 -14.09633 -13.88686 -13.76745 -13.44162 -13.16806 -12.87089 -12.78968 -12.60458 -12.46028 -12.40409 -12.31991 -12.16696 -11.97158 -11.86413 -11.47814 -11.14418 -11.03030 -10.79042 -10.59722 -10.17876 -10.04066 -9.77512 -8.83239 -7.78638 -5.17236 -0.53108 -0.06514 1.01849 1.46093 1.46974 1.56315 1.69696 2.10805 2.50568 2.54890 3.03720 3.34941 3.48362 3.53220 3.66990 3.84461 3.95867 4.00909 4.13624 4.19364 4.26225 4.40362 4.50177 4.64391 4.65435 4.74740 4.78217 4.84284 4.92884 4.96508 5.01771 5.09467 5.18452 5.24830 5.35708 5.49639 5.53576 5.57892 5.78270 5.91235 6.30495 6.62038 7.07649 7.29443 7.70802 8.56688 9.28064 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.002904 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.652339 B = 9637.900117 C =10493.399323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.062 4.062 3 Si 0.972 3.028 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.222 4.222 8 H 0.068 0.932 9 N -0.620 5.620 10 C 0.136 3.864 11 H 0.119 0.881 12 C -0.124 4.124 13 C -0.115 4.115 14 C 0.118 3.882 15 H 0.061 0.939 16 C 0.150 3.850 17 H 0.056 0.944 18 N -0.691 5.691 19 C 0.546 3.454 20 O -0.556 6.556 21 C -0.150 4.150 22 C -0.033 4.033 23 C -0.142 4.142 24 C 0.134 3.866 25 F -0.129 7.129 26 C -0.159 4.159 27 C 0.022 3.978 28 Cl -0.042 7.042 29 C -0.123 4.123 30 H 0.249 0.751 31 H 0.035 0.965 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.038 0.962 35 H 0.413 0.587 36 H 0.179 0.821 37 H 0.183 0.817 38 H 0.162 0.838 39 H 0.102 0.898 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.514 -24.437 -0.693 24.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.255 4.255 3 Si 0.802 3.198 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.086 0.914 9 N -0.342 5.342 10 C 0.030 3.970 11 H 0.137 0.863 12 C -0.163 4.163 13 C -0.155 4.155 14 C 0.010 3.990 15 H 0.080 0.920 16 C 0.043 3.957 17 H 0.074 0.926 18 N -0.344 5.344 19 C 0.333 3.667 20 O -0.435 6.435 21 C -0.154 4.154 22 C -0.052 4.052 23 C -0.160 4.160 24 C 0.114 3.886 25 F -0.108 7.108 26 C -0.178 4.178 27 C -0.006 4.006 28 Cl -0.013 7.013 29 C -0.163 4.163 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.057 0.943 35 H 0.252 0.748 36 H 0.196 0.804 37 H 0.200 0.800 38 H 0.180 0.820 39 H 0.120 0.880 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.592 -23.810 -1.070 24.103 hybrid contribution 0.791 1.019 -0.035 1.290 sum -2.801 -22.791 -1.106 22.990 Atomic orbital electron populations 1.69660 1.05740 1.24918 1.58879 1.25354 0.96542 0.99982 1.03590 0.85087 0.77850 0.80110 0.76764 1.20089 1.21916 1.21821 1.19304 0.90395 0.83683 1.41749 0.91385 1.46759 1.03170 0.99431 1.84814 1.23692 0.85782 0.95658 0.91858 0.86342 1.23093 0.96881 0.97865 0.98441 1.22972 0.96564 0.99250 0.96686 1.23316 0.95747 0.84817 0.95107 0.92042 1.22296 0.97253 0.78464 0.97662 0.92621 1.45841 1.18759 1.05394 1.64402 1.18402 0.83948 0.86267 0.78073 1.90880 1.26414 1.80553 1.45631 1.19873 0.96506 0.92351 1.06659 1.21492 0.94427 0.96324 0.92936 1.21532 1.00756 0.91942 1.01800 1.17812 0.94238 0.78077 0.98452 1.91558 1.94856 1.31212 1.93134 1.21061 0.98795 0.94076 1.03903 1.20854 0.88769 0.93045 0.97903 1.98439 1.29371 1.89602 1.83851 1.23296 0.95137 0.98234 0.99620 0.94162 0.94641 0.89049 0.89226 0.94340 0.74779 0.80402 0.79973 0.82031 0.87961 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.15 10.46 21.65 0.23 -53.92 16 2 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 3 Si 0.97 46.23 29.55 68.60 2.03 48.25 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.22 -12.56 10.59 84.04 0.89 -11.67 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.62 -30.94 2.97 -615.27 -1.83 -32.77 16 10 C 0.14 5.85 4.67 46.22 0.22 6.07 16 11 H 0.12 6.04 5.52 -2.39 -0.01 6.03 16 12 C -0.12 -4.26 6.53 32.57 0.21 -4.05 16 13 C -0.12 -3.86 6.36 32.56 0.21 -3.65 16 14 C 0.12 4.84 5.29 46.22 0.24 5.08 16 15 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 16 C 0.15 5.23 3.17 46.98 0.15 5.38 16 17 H 0.06 2.31 7.70 -2.39 -0.02 2.29 16 18 N -0.69 -17.07 3.61 -436.21 -1.58 -18.65 16 19 C 0.55 15.15 7.76 86.73 0.67 15.82 16 20 O -0.56 -20.50 13.69 -3.97 -0.05 -20.55 16 21 C -0.15 -3.06 5.88 -20.07 -0.12 -3.18 16 22 C -0.03 -0.38 9.53 22.51 0.21 -0.17 16 23 C -0.14 -1.33 10.01 22.28 0.22 -1.11 16 24 C 0.13 1.79 7.31 22.46 0.16 1.95 16 25 F -0.13 -1.80 17.26 44.97 0.78 -1.03 16 26 C -0.16 -2.56 9.79 22.30 0.22 -2.34 16 27 C 0.02 0.48 6.35 22.59 0.14 0.63 16 28 Cl -0.04 -1.12 26.02 -2.72 -0.07 -1.19 16 29 C -0.12 -4.23 6.22 32.58 0.20 -4.03 16 30 H 0.25 13.89 8.31 -92.70 -0.77 13.12 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 2.29 7.85 -2.39 -0.02 2.27 16 33 H 0.09 2.28 6.55 -2.39 -0.02 2.26 16 34 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.41 6.68 6.05 -92.71 -0.56 6.12 16 36 H 0.18 0.87 6.40 -2.91 -0.02 0.85 16 37 H 0.18 0.53 8.06 -2.91 -0.02 0.50 16 38 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 39 H 0.10 2.51 7.38 -2.39 -0.02 2.49 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -71.39 342.14 4.15 -67.25 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.54 Total: 10.88 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 4.11 Total: 1.73 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -3.18 Total: -105.34 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.05 Total: -20.55 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.78 Total: -1.03 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.07 Total: -1.19 kcal Total: -71.39 4.15 -67.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096475378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.436 kcal (2) G-P(sol) polarization free energy of solvation -71.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds