Wall clock time and date at job start Tue Mar 31 2020 20:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27760 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.27769 * 3 2 1 6 6 H 1.48492 * 109.47124 * 120.27784 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.50232 * 130.84076 * 359.66493 * 9 7 2 11 11 H 1.09001 * 115.86174 * 359.68279 * 10 9 7 12 12 C 1.55386 * 101.26584 * 234.03686 * 10 9 7 13 13 C 1.54849 * 103.48427 * 327.25535 * 12 10 9 14 14 C 1.50240 * 130.83316 * 179.97438 * 9 7 2 15 15 H 1.08997 * 115.86051 * 0.32967 * 14 9 7 16 16 C 1.55845 * 101.05133 * 233.93106 * 14 9 7 17 17 H 1.09000 * 110.62830 * 208.57510 * 16 14 9 18 18 N 1.46500 * 110.62147 * 85.55484 * 16 14 9 19 19 C 1.34778 * 119.99994 * 154.99665 * 18 16 14 20 20 O 1.21578 * 119.99946 * 0.02562 * 19 18 16 21 21 C 1.47631 * 120.00266 * 179.97438 * 19 18 16 22 22 C 1.39701 * 120.15276 * 0.02562 * 21 19 18 23 23 C 1.37790 * 119.89116 * 180.02562 * 22 21 19 24 24 C 1.38610 * 120.20756 * 359.97438 * 23 22 21 25 25 Cl 1.73600 * 119.84562 * 180.02562 * 24 23 22 26 26 C 1.38359 * 120.30901 * 0.02948 * 24 23 22 27 27 C 1.38254 * 120.10413 * 359.67351 * 26 24 23 28 28 F 1.35103 * 120.10227 * 180.30209 * 27 26 24 29 29 C 1.55485 * 103.32951 * 326.98315 * 16 14 9 30 30 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 31 31 H 1.08998 * 110.71948 * 208.69588 * 12 10 9 32 32 H 1.09005 * 110.49328 * 85.69675 * 12 10 9 33 33 H 1.09004 * 110.62288 * 241.37847 * 13 12 10 34 34 H 1.08995 * 110.76929 * 118.42686 * 13 12 10 35 35 H 0.96997 * 120.00632 * 335.00419 * 18 16 14 36 36 H 1.08002 * 120.05164 * 0.02718 * 22 21 19 37 37 H 1.08004 * 119.89440 * 179.97438 * 23 22 21 38 38 H 1.08004 * 119.94455 * 179.97438 * 26 24 23 39 39 H 1.08999 * 110.60571 * 241.58416 * 29 16 14 40 40 H 1.08989 * 110.75615 * 118.47901 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0989 1.6993 -1.2159 5 1 1.2853 2.7465 0.0068 6 1 3.1090 1.6934 1.2090 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 -0.1500 -2.6705 0.0064 11 1 -0.8013 -1.7966 0.0226 12 6 -0.2685 -3.6132 1.2359 13 6 1.0726 -4.3874 1.2278 14 6 1.8186 -3.8072 -0.0119 15 1 2.9011 -3.9344 -0.0117 16 6 1.0603 -4.3817 -1.2463 17 1 0.8869 -5.4512 -1.1269 18 7 1.8035 -4.1124 -2.4797 19 6 1.6339 -4.9061 -3.5557 20 8 0.8636 -5.8453 -3.5029 21 6 2.3824 -4.6345 -4.7988 22 6 3.2679 -3.5559 -4.8633 23 6 3.9635 -3.3070 -6.0264 24 6 3.7876 -4.1237 -7.1325 25 17 4.6692 -3.8019 -8.5929 26 6 2.9128 -5.1942 -7.0780 27 6 2.2129 -5.4593 -5.9155 28 9 1.3632 -6.5083 -5.8604 29 6 -0.2862 -3.6042 -1.2336 30 1 -0.4850 0.8400 0.0040 31 1 -1.1080 -4.2981 1.1173 32 1 -0.3713 -3.0331 2.1531 33 1 0.8980 -5.4564 1.1052 34 1 1.6361 -4.1939 2.1405 35 1 2.4179 -3.3630 -2.5220 36 1 3.4071 -2.9182 -4.0028 37 1 4.6478 -2.4729 -6.0764 38 1 2.7800 -5.8265 -7.9434 39 1 -1.1240 -4.2901 -1.1078 40 1 -0.4022 -3.0176 -2.1448 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097476688.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:15 Heat of formation + Delta-G solvation = -13.974247 kcal Electronic energy + Delta-G solvation = -26990.624322 eV Core-core repulsion = 22939.950244 eV Total energy + Delta-G solvation = -4050.674078 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -49.00525 -40.19579 -39.18507 -38.09773 -36.76191 -33.96821 -32.62695 -31.49841 -30.85265 -29.17507 -28.81561 -27.72750 -24.46132 -24.07638 -23.12790 -21.51711 -20.12128 -19.86936 -18.86393 -18.17948 -17.29668 -17.05934 -16.82372 -15.89104 -15.64585 -15.56576 -14.92956 -14.80608 -14.40910 -14.13131 -13.91419 -13.65046 -13.51345 -13.46225 -12.95031 -12.61658 -12.09771 -11.92518 -11.84899 -11.63225 -11.40360 -11.28122 -11.16861 -10.99707 -10.93838 -10.56877 -10.39898 -10.17211 -9.97828 -9.83762 -9.39439 -9.31864 -9.22165 -9.04603 -9.01427 -8.51967 -7.00982 -5.79941 -3.19639 0.30027 0.76103 1.60150 2.65670 3.31460 3.34626 3.36680 3.38716 3.53697 3.92186 4.28230 4.35215 4.55982 4.66937 4.79878 5.05832 5.11678 5.29721 5.45158 5.58989 5.61247 5.64771 5.71713 5.74965 5.83472 6.00314 6.06487 6.10454 6.25296 6.30205 6.38162 6.45395 6.55896 6.69334 6.78955 6.90914 7.04085 7.28211 7.40723 7.73828 7.84493 8.11853 8.44926 9.01254 9.64743 10.45842 11.28779 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.011845 B = 0.003570 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.345271 B = 7841.261977 C = 9692.382053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.591 5.591 10 C 0.153 3.847 11 H 0.153 0.847 12 C -0.139 4.139 13 C -0.128 4.128 14 C 0.125 3.875 15 H 0.088 0.912 16 C 0.128 3.872 17 H 0.083 0.917 18 N -0.695 5.695 19 C 0.550 3.450 20 O -0.534 6.534 21 C -0.161 4.161 22 C -0.042 4.042 23 C -0.128 4.128 24 C 0.011 3.989 25 Cl -0.055 7.055 26 C -0.161 4.161 27 C 0.171 3.829 28 F -0.108 7.108 29 C -0.142 4.142 30 H 0.255 0.745 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.402 0.598 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.055 0.945 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.225 -8.053 -11.340 15.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.312 5.312 10 C 0.047 3.953 11 H 0.170 0.830 12 C -0.179 4.179 13 C -0.168 4.168 14 C 0.016 3.984 15 H 0.106 0.894 16 C 0.022 3.978 17 H 0.101 0.899 18 N -0.345 5.345 19 C 0.336 3.664 20 O -0.412 6.412 21 C -0.165 4.165 22 C -0.061 4.061 23 C -0.147 4.147 24 C -0.016 4.016 25 Cl -0.025 7.025 26 C -0.181 4.181 27 C 0.150 3.850 28 F -0.085 7.085 29 C -0.182 4.182 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.238 0.762 36 H 0.169 0.831 37 H 0.165 0.835 38 H 0.169 0.831 39 H 0.073 0.927 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.729 -8.373 -11.393 15.658 hybrid contribution 0.713 1.052 -0.181 1.283 sum 7.442 -7.321 -11.574 15.587 Atomic orbital electron populations 1.69451 1.05020 1.25174 1.56898 1.24702 0.95576 0.97478 1.02651 0.86156 0.78390 0.83099 0.77807 1.21274 1.21594 1.21275 1.18949 0.90157 0.81902 1.43601 0.90437 1.46542 1.01639 0.98556 1.84444 1.23659 0.87379 0.95380 0.88891 0.82997 1.23002 0.95302 0.98292 1.01289 1.22895 0.97717 0.97692 0.98496 1.23181 0.96050 0.86996 0.92178 0.89354 1.22810 0.92949 0.98818 0.83187 0.89933 1.45907 1.45108 1.31080 1.12409 1.17876 0.82346 0.83110 0.83060 1.90815 1.37090 1.30017 1.83281 1.20379 1.02251 0.98573 0.95299 1.21325 0.92110 0.94472 0.98205 1.21077 1.01731 1.00500 0.91373 1.20804 0.95589 0.96252 0.88944 1.98398 1.74204 1.94936 1.35002 1.20931 0.98913 0.99742 0.98474 1.17426 0.89487 0.85286 0.92829 1.91626 1.67063 1.53304 1.96551 1.23553 0.94793 0.98333 1.01562 0.93431 0.93228 0.92624 0.92963 0.92406 0.76193 0.83129 0.83474 0.83097 0.92677 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.96 10.47 55.49 0.58 -24.38 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 20.63 29.55 -169.99 -5.02 15.61 16 4 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.22 -5.45 10.59 -15.06 -0.16 -5.61 16 8 H 0.08 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.59 -13.39 2.99 -146.08 -0.44 -13.83 16 10 C 0.15 3.38 4.69 -63.07 -0.30 3.09 16 11 H 0.15 3.87 5.52 -51.93 -0.29 3.58 16 12 C -0.14 -2.68 6.42 -24.49 -0.16 -2.84 16 13 C -0.13 -2.25 6.44 -24.21 -0.16 -2.41 16 14 C 0.12 2.32 5.06 -62.77 -0.32 2.00 16 15 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 16 C 0.13 2.33 2.82 -65.09 -0.18 2.14 16 17 H 0.08 1.51 7.23 -51.93 -0.38 1.14 16 18 N -0.70 -11.54 5.04 -52.07 -0.26 -11.80 16 19 C 0.55 9.33 7.77 -12.43 -0.10 9.23 16 20 O -0.53 -10.78 14.99 5.30 0.08 -10.70 16 21 C -0.16 -2.22 5.88 -104.91 -0.62 -2.83 16 22 C -0.04 -0.46 9.54 -39.20 -0.37 -0.84 16 23 C -0.13 -1.21 9.81 -39.61 -0.39 -1.60 16 24 C 0.01 0.11 6.32 -39.40 -0.25 -0.14 16 25 Cl -0.05 -0.47 28.95 -51.86 -1.50 -1.97 16 26 C -0.16 -1.68 9.79 -39.53 -0.39 -2.07 16 27 C 0.17 2.27 7.28 -38.97 -0.28 1.99 16 28 F -0.11 -1.66 15.55 2.25 0.04 -1.62 16 29 C -0.14 -2.83 6.25 -23.91 -0.15 -2.98 16 30 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.05 0.86 7.80 -51.93 -0.41 0.45 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.81 7.82 -51.93 -0.41 0.41 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.40 6.21 6.69 -40.82 -0.27 5.94 16 36 H 0.15 1.49 6.40 -52.49 -0.34 1.15 16 37 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 39 H 0.05 1.03 7.80 -51.93 -0.41 0.63 16 40 H 0.06 1.30 8.00 -51.94 -0.42 0.89 16 LS Contribution 346.95 15.07 5.23 5.23 Total: -1.00 -29.11 346.95 -9.77 -38.88 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.56 Total: 7.75 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -3.91 Total: -3.17 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.12 Total: -50.00 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.11 -9.77 -38.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097476688.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.905 kcal (2) G-P(sol) polarization free energy of solvation -29.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds